mRNA_L-elsbetiae_contig6229.14823.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6229.14823.1
Unique NamemRNA_L-elsbetiae_contig6229.14823.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6229.14823.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 3.080e-35
Identity = 80/136 (58.82%), Postives = 86/136 (63.24%), Query Frame = -2 
Query:    3 GGLVAELRTNVCIHNASASDVEVDMAETASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL-----AVVRLAAGARLALPLPVLSSWQLRVAGDATEAWSCPLRLSPALLDPAVPNALRLTSDMERNSL 395
            GGLVAELRTNVC+HN SASDVEVDM + ASA                                           VV LA G+RLALPLPVLSSWQLR+ GDAT+AWS PLRLSPALLDPAVPNALRLTSDMERNS+
Sbjct:  696 GGLVAELRTNVCVHNGSASDVEVDMVDIASAAAAVATTPGVKRPGQPAGEQDWGAAPAVAPRTGGRGXXXXXATVVHLAPGSRLALPLPVLSSWQLRIGGDATDAWSRPLRLSPALLDPAVPNALRLTSDMERNSV 831
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BLAST of mRNA_L-elsbetiae_contig6229.14823.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 138 bits (347), Expect = 7.850e-35
Identity = 83/135 (61.48%), Postives = 87/135 (64.44%), Query Frame = -2 
Query:    3 GGLVAELRTNVCIHNASASDVEVDMAETASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXL----AVVRLAAGARLALPLPVLSSWQLRVAGDATEAWSCPLRLSPALLDPAVPNALRLTSDMERNSL 395
            GGLVAELRTNVC+HN SASDVEVDM + ASA                                 XXX      VV LA GARLALPLPVLSSW LR+ GDAT AWS PLRLSPALLDPAVPNALRLTSDMERNS+
Sbjct: 2950 GGLVAELRTNVCVHNGSASDVEVDMVDIASAAAAVATTPGVKRPGQPAWEQDWGAAPAAAPRTGXXXXXXXATVVNLAPGARLALPLPVLSSWHLRIGGDATNAWSRPLRLSPALLDPAVPNALRLTSDMERNSV 3084
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BLAST of mRNA_L-elsbetiae_contig6229.14823.1 vs. uniprot
Match: A0A836C889_9STRA (C2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C889_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.070e-10
Identity = 39/63 (61.90%), Postives = 42/63 (66.67%), Query Frame = -2 
Query:    3 AVVRLAAGARLALPLPVLSSWQLRVAGDATEAWSCPLRLSPALLDPAVPNALRLTSDMERNSL 191
            A  +L  G    LPLPVL+   LRVAGDAT AW  P+ LSPALLDPA P ALR T  ME NSL
Sbjct: 2972 APYQLLPGEEAPLPLPVLARRALRVAGDATCAWREPIALSPALLDPATPAALRRTQAMEINSL 3034
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6229.14823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KWU7_9PHAE3.080e-3558.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G2C6_ECTSI7.850e-3561.48C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A836C889_9STRA3.070e-1061.90C2 domain-containing protein n=1 Tax=Tribonema min... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6229contigL-elsbetiae_contig6229:2279..2746 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size468
Cds size450
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.1783679-UTR-L-elsbetiae_contig6229:2278..22961622816684.1783679-UTR-L-elsbetiae_contig6229:2278..2296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6229 2279..2296 +
1691683738.1611755-UTR-L-elsbetiae_contig6229:2278..22961691683738.1611755-UTR-L-elsbetiae_contig6229:2278..2296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6229 2279..2296 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.1902113-CDS-L-elsbetiae_contig6229:2296..27461622816684.1902113-CDS-L-elsbetiae_contig6229:2296..2746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 2297..2746 +
1691683738.1777716-CDS-L-elsbetiae_contig6229:2296..27461691683738.1777716-CDS-L-elsbetiae_contig6229:2296..2746Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 2297..2746 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6229.14823.1prot_L-elsbetiae_contig6229.14823.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6229 2297..2746 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6229.14823.1

>prot_L-elsbetiae_contig6229.14823.1 ID=prot_L-elsbetiae_contig6229.14823.1|Name=mRNA_L-elsbetiae_contig6229.14823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
MSLVRRSALGTAGSRRAGESRRGQDHASVASPATRSCQEDSTGSGSARRA
PAASRTTAKPPPPSPAAAEGATAAAAAPTEAAGLLAPGVVAIAAAADAVS
AMSTSTSDADALWMQTLVRSSATSPPRDDDDDDDDEAIDNRSSAPPACWA
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mRNA from alignment at L-elsbetiae_contig6229:2279..2746+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6229.14823.1 ID=mRNA_L-elsbetiae_contig6229.14823.1|Name=mRNA_L-elsbetiae_contig6229.14823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:2279..2746+ (Laminarionema elsbetiae ELsaHSoW15)
CAGAGGGAGTTGCGTTCCATGTCGCTCGTGAGGCGGAGCGCGTTAGGCAC
GGCCGGGTCGAGGAGGGCGGGGGAGAGCCGGAGGGGGCAGGACCACGCCT
CAGTCGCGTCCCCGGCGACCCGCAGCTGCCAGGAAGACAGCACGGGGAGC
GGGAGCGCCAGGCGAGCCCCCGCGGCGAGCCGGACGACCGCTAAGCCGCC
GCCGCCATCGCCCGCCGCCGCCGAGGGAGCTACTGCTGCCGCTGCTGCTC
CGACGGAGGCCGCGGGTCTCCTCGCGCCGGGGGTTGTCGCAATTGCCGCC
GCCGCGGACGCCGTCTCCGCCATGTCGACCTCCACGTCTGACGCGGACGC
GTTGTGGATGCAGACGTTGGTCCGCAGCTCCGCCACCAGCCCCCCGCGAG
ACGACGACGACGACGACGACGACGAGGCCATCGACAACCGGTCGTCGGCG
CCACCGGCCTGCTGGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6229:2279..2746+

>mRNA_L-elsbetiae_contig6229.14823.1 ID=mRNA_L-elsbetiae_contig6229.14823.1|Name=mRNA_L-elsbetiae_contig6229.14823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:2279..2746+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGCTCGTGAGGCGGAGCGCGTTAGGCACGGCCGGGTCGAGGAGGGC
GGGGGAGAGCCGGAGGGGGCAGGACCACGCCTCAGTCGCGTCCCCGGCGA
CCCGCAGCTGCCAGGAAGACAGCACGGGGAGCGGGAGCGCCAGGCGAGCC
CCCGCGGCGAGCCGGACGACCGCTAAGCCGCCGCCGCCATCGCCCGCCGC
CGCCGAGGGAGCTACTGCTGCCGCTGCTGCTCCGACGGAGGCCGCGGGTC
TCCTCGCGCCGGGGGTTGTCGCAATTGCCGCCGCCGCGGACGCCGTCTCC
GCCATGTCGACCTCCACGTCTGACGCGGACGCGTTGTGGATGCAGACGTT
GGTCCGCAGCTCCGCCACCAGCCCCCCGCGAGACGACGACGACGACGACG
ACGACGAGGCCATCGACAACCGGTCGTCGGCGCCACCGGCCTGCTGGGCA
ATGTCGCTCGTGAGGCGGAGCGCGTTAGGCACGGCCGGGTCGAGGAGGGC
GGGGGAGAGCCGGAGGGGGCAGGACCACGCCTCAGTCGCGTCCCCGGCGA
CCCGCAGCTGCCAGGAAGACAGCACGGGGAGCGGGAGCGCCAGGCGAGCC
CCCGCGGCGAGCCGGACGACCGCTAAGCCGCCGCCGCCATCGCCCGCCGC
CGCCGAGGGAGCTACTGCTGCCGCTGCTGCTCCGACGGAGGCCGCGGGTC
TCCTCGCGCCGGGGGTTGTCGCAATTGCCGCCGCCGCGGACGCCGTCTCC
GCCATGTCGACCTCCACGTCTGACGCGGACGCGTTGTGGATGCAGACGTT
GGTCCGCAGCTCCGCCACCAGCCCCCCGCGAGACGACGACGACGACGACG
ACGACGAGGCCATCGACAACCGGTCGTCGGCGCCACCGGCCTGCTGGGCA
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