mRNA_L-elsbetiae_contig6229.14822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6229.14822.1
Unique NamemRNA_L-elsbetiae_contig6229.14822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6229.14822.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 103 bits (257), Expect = 9.350e-23
Identity = 75/122 (61.48%), Postives = 80/122 (65.57%), Query Frame = 1 
Query:   70 AGGAASSGTADWVLMIQPSYLLTNALPCAMEVEVLQPPLAADGXXXXXXXXVRRERHRSWAGADSGATDPEETDGPGGSWRDAD-SNVSSD-DSDAVSVASSVTS-RQTQQXXXXXXXVATA 426
            A  A SSGTADWVLM+QPSYL+TNALPCAMEVEVLQPP A  G         R ER RSW G  S   D  E D  GG WRD   S+VSSD DSDA S+ASSVTS RQTQQ       VA+A
Sbjct: 3216 AAAATSSGTADWVLMVQPSYLVTNALPCAMEVEVLQPP-AVGGVGGVE----RSERSRSWGGFGSDLADHGEVD-LGGGWRDGGGSSVSSDEDSDAASLASSVTSSRQTQQSEGKATAVASA 3331
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BLAST of mRNA_L-elsbetiae_contig6229.14822.1 vs. uniprot
Match: A0A6H5KWU7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWU7_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.670e-21
Identity = 70/111 (63.06%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:   70 AGGAASSGTADWVLMIQPSYLLTNALPCAMEVEVLQPPLAADGXXXXXXXXVRRERHRSWAGADSGATDPEETDGPGGSWRDAD-SNVSSD-DSDAVSVASSVTS-RQTQQ 393
            A  A SSGTADWVLM+QPSYL+TNALPCAMEVEVLQPP A  G         R  R RSW G+ S      E D  GG WRD   S+VSSD DSDA S+ASSVTS RQTQQ
Sbjct:  958 AAAATSSGTADWVLMVQPSYLVTNALPCAMEVEVLQPP-AVGGVSGVE----RSVRSRSWGGSGSDLAGHGEVD-LGGGWRDGGGSSVSSDEDSDAASLASSVTSSRQTQQ 1062
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6229.14822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G2C6_ECTSI9.350e-2361.48C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5KWU7_9PHAE9.670e-2163.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6229contigL-elsbetiae_contig6229:1516..1974 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size460
Cds size459
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.1428936-CDS-L-elsbetiae_contig6229:1515..19741622816684.1428936-CDS-L-elsbetiae_contig6229:1515..1974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 1516..1974 -
1691683738.1499002-CDS-L-elsbetiae_contig6229:1515..19741691683738.1499002-CDS-L-elsbetiae_contig6229:1515..1974Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 1516..1974 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6229.14822.1prot_L-elsbetiae_contig6229.14822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6229 1516..1974 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6229.14822.1

>prot_L-elsbetiae_contig6229.14822.1 ID=prot_L-elsbetiae_contig6229.14822.1|Name=mRNA_L-elsbetiae_contig6229.14822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
LRPRASPSPPPSPSPLTLGGAAVAGGAASSGTADWVLMIQPSYLLTNALP
CAMEVEVLQPPLAADGGAAGGGGGVRRERHRSWAGADSGATDPEETDGPG
GSWRDADSNVSSDDSDAVSVASSVTSRQTQQSESKARAVATATDRAEAVR
VVK
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mRNA from alignment at L-elsbetiae_contig6229:1516..1974-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6229.14822.1 ID=mRNA_L-elsbetiae_contig6229.14822.1|Name=mRNA_L-elsbetiae_contig6229.14822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=459bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:1516..1974- (Laminarionema elsbetiae ELsaHSoW15)
TTGAGGCCAAGGGCATCCCCTTCCCCGCCGCCGTCGCCCTCGCCGCTGAC
TCTCGGGGGAGCGGCAGTAGCGGGCGGCGCGGCCTCCTCTGGAACCGCGG
ATTGGGTGCTGATGATCCAGCCCTCCTATCTCTTGACCAACGCGCTGCCT
TGCGCGATGGAGGTGGAGGTGCTGCAGCCGCCCCTGGCCGCCGATGGCGG
GGCCGCCGGTGGCGGGGGGGGCGTCCGCCGTGAACGCCACCGTTCGTGGG
CCGGTGCCGACTCGGGCGCCACCGATCCCGAAGAGACCGACGGCCCTGGA
GGGAGCTGGAGGGACGCCGACTCCAACGTCAGCAGCGACGACAGCGACGC
CGTGTCGGTGGCGTCCTCGGTCACCTCTCGCCAGACGCAGCAGAGCGAAA
GCAAGGCGAGAGCGGTAGCGACCGCGACGGATAGGGCGGAGGCTGTTCGA
GTTGTCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6229:1516..1974-

>mRNA_L-elsbetiae_contig6229.14822.1 ID=mRNA_L-elsbetiae_contig6229.14822.1|Name=mRNA_L-elsbetiae_contig6229.14822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:1516..1974- (Laminarionema elsbetiae ELsaHSoW15)
TTGAGGCCAAGGGCATCCCCTTCCCCGCCGCCGTCGCCCTCGCCGCTGAC
TCTCGGGGGAGCGGCAGTAGCGGGCGGCGCGGCCTCCTCTGGAACCGCGG
ATTGGGTGCTGATGATCCAGCCCTCCTATCTCTTGACCAACGCGCTGCCT
TGCGCGATGGAGGTGGAGGTGCTGCAGCCGCCCCTGGCCGCCGATGGCGG
GGCCGCCGGTGGCGGGGGGGGCGTCCGCCGTGAACGCCACCGTTCGTGGG
CCGGTGCCGACTCGGGCGCCACCGATCCCGAAGAGACCGACGGCCCTGGA
GGGAGCTGGAGGGACGCCGACTCCAACGTCAGCAGCGACGACAGCGACGC
CGTGTCGGTGGCGTCCTCGGTCACCTCTCGCCAGACGCAGCAGAGCGAAA
GCAAGGCGAGAGCGGTAGCGACCGCGACGGATAGGGCGGAGGCTGTTCGA
GTTGTCAAGTTGAGGCCAAGGGCATCCCCTTCCCCGCCGCCGTCGCCCTC
GCCGCTGACTCTCGGGGGAGCGGCAGTAGCGGGCGGCGCGGCCTCCTCTG
GAACCGCGGATTGGGTGCTGATGATCCAGCCCTCCTATCTCTTGACCAAC
GCGCTGCCTTGCGCGATGGAGGTGGAGGTGCTGCAGCCGCCCCTGGCCGC
CGATGGCGGGGCCGCCGGTGGCGGGGGGGGCGTCCGCCGTGAACGCCACC
GTTCGTGGGCCGGTGCCGACTCGGGCGCCACCGATCCCGAAGAGACCGAC
GGCCCTGGAGGGAGCTGGAGGGACGCCGACTCCAACGTCAGCAGCGACGA
CAGCGACGCCGTGTCGGTGGCGTCCTCGGTCACCTCTCGCCAGACGCAGC
AGAGCGAAAGCAAGGCGAGAGCGGTAGCGACCGCGACGGATAGGGCGGAG
GCTGTTCGAGTTGTCAAG
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