mRNA_L-elsbetiae_contig6229.14821.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6229.14821.1
Unique NamemRNA_L-elsbetiae_contig6229.14821.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6229.14821.1 vs. uniprot
Match: D7G2C6_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2C6_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 1.870e-9
Identity = 30/40 (75.00%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:  178 EEYDPVRGLESVWKGLIGSGQETKVNGRVDNGRPFYVRVR 297
            EEYD + G  SVWKGL+GSGQE KV G VDN RPFYVRVR
Sbjct: 3438 EEYDTIHGFHSVWKGLVGSGQEAKV-GCVDNDRPFYVRVR 3476
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6229.14821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G2C6_ECTSI1.870e-975.00C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6229contigL-elsbetiae_contig6229:475..1284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816684.1020334-CDS-L-elsbetiae_contig6229:475..5231622816684.1020334-CDS-L-elsbetiae_contig6229:475..523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 476..523 -
1691683738.1286993-CDS-L-elsbetiae_contig6229:475..5231691683738.1286993-CDS-L-elsbetiae_contig6229:475..523Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 476..523 -
1622816684.1138852-CDS-L-elsbetiae_contig6229:1035..12841622816684.1138852-CDS-L-elsbetiae_contig6229:1035..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 1036..1284 -
1691683738.1401098-CDS-L-elsbetiae_contig6229:1035..12841691683738.1401098-CDS-L-elsbetiae_contig6229:1035..1284Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6229 1036..1284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6229.14821.1prot_L-elsbetiae_contig6229.14821.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6229 476..1284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6229.14821.1

>prot_L-elsbetiae_contig6229.14821.1 ID=prot_L-elsbetiae_contig6229.14821.1|Name=mRNA_L-elsbetiae_contig6229.14821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp
GGGGGGGAGNRTRSWSGVDAGGGSEADGARGPLGSESAARRLRGGPSQGS
QLQEEEDESEEYDPVRGLESVWKGLIGSGQETKVNGRVDNGRPFYVRVR
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mRNA from alignment at L-elsbetiae_contig6229:475..1284-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6229.14821.1 ID=mRNA_L-elsbetiae_contig6229.14821.1|Name=mRNA_L-elsbetiae_contig6229.14821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:475..1284- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTGGCGGCGGCGGTGGTGCTGGTAACAGGACGAGAAGCTGGAGTGG
TGTTGACGCCGGCGGTGGAAGTGAGGCGGACGGTGCTAGAGGGCCCCTTG
GCTCGGAATCCGCTGCGAGGAGGCTGCGGGGCGGGCCTTCCCAGGGCTCG
CAGCTACAAGAGGAGGAAGACGAGAGCGAGGAGTACGACCCCGTCCGCGG
GTTGGAGAGCGTGTGGAAGGGCCTCATCGGGAGTGGACAAGAAACCAAGG
TATGAGACTCGGCCGCTCTTGGCGTACACCGCTGCCAGAGGGAACCAACC
CTTCGAAGAGAGATTCTTTCGACCTCTGTTTGTTTGCTCGAGACCGAGGA
GGACAGGCGTTGCTAGCTTTCAGCTTGTATGGAGGGCAGAGAGCACACGG
GCCTCCGGAAAAGTTATCTTCCGAGAGTCCAAGGCGCGCCTCCGGAACCC
TTGGCCAAACCCGCGCAAACCTCCAAAATGCATGATCTTGCGTGGATACC
ATTAGCACGATCTTGTTTCGCCGGCGCTCAGATACTTACCTACCTACAGC
AGTGCCGCCAAATCAACAACCCTCGTGTTTTGGTTCCGTCTTTTTCCAGC
TTCTTCTTCCTTCGTGATGTGTTGTGTGGCGCCGATCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCCGATGCCGCATGGGATGAATGCGGCCGCCGCCA
CCGCCTGACCGTCTCGTTTTGCTTTCTTCGTTCGCGTTTTTTTTTTTTTT
TTGCGGTGCAGGTCAACGGCCGCGTGGACAACGGCCGCCCCTTCTACGTG
CGCGTGCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6229:475..1284-

>mRNA_L-elsbetiae_contig6229.14821.1 ID=mRNA_L-elsbetiae_contig6229.14821.1|Name=mRNA_L-elsbetiae_contig6229.14821.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig6229:475..1284- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGTGGCGGCGGCGGTGGTGCTGGTAACAGGACGAGAAGCTGGAGTGG
TGTTGACGCCGGCGGTGGAAGTGAGGCGGACGGTGCTAGAGGGCCCCTTG
GCTCGGAATCCGCTGCGAGGAGGCTGCGGGGCGGGCCTTCCCAGGGCTCG
CAGCTACAAGAGGAGGAAGACGAGAGCGAGGAGTACGACCCCGTCCGCGG
GTTGGAGAGCGTGTGGAAGGGCCTCATCGGGAGTGGACAAGAAACCAAGG
GGGGTGGCGGCGGCGGTGGTGCTGGTAACAGGACGAGAAGCTGGAGTGGT
GTTGACGCCGGCGGTGGAAGTGAGGCGGACGGTGCTAGAGGGCCCCTTGG
CTCGGAATCCGCTGCGAGGAGGCTGCGGGGCGGGCCTTCCCAGGGCTCGC
AGCTACAAGAGGAGGAAGACGAGAGCGAGGAGTACGACCCCGTCCGCGGG
TTGGAGAGCGTGTGGAAGGGCCTCATCGGGAGTGGACAAGAAACCAAGGT
CAACGGCCGCGTGGACAACGGCCGCCCCTTCTACGTGCGCGTGCGGGTCA
ACGGCCGCGTGGACAACGGCCGCCCCTTCTACGTGCGCGTGCGG
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