mRNA_L-elsbetiae_contig6226.14819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6226.14819.1
Unique NamemRNA_L-elsbetiae_contig6226.14819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: D8LCR7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCR7_ECTSI)

HSP 1 Score: 362 bits (930), Expect = 1.770e-119
Identity = 187/234 (79.91%), Postives = 199/234 (85.04%), Query Frame = 1 
Query:   28 MKVLSTVGAMTACASCASAFVTPSSISRVITSSP-----LRMSDAAAAVVE---EAPPAPVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA 705
            MKV+STVGA  ACASCASAFV PSS SRVI+SSP     LRM++  AA  E   E  P P   AMS S+PFL QPKNLEGMV D+GFDPFGF+T FP KFMREAELKHGRVAMLAVVGWLVSE+VHVPGAAY S+NPVDAMAAVGPGPMLQIF FCGFLEWKFHNGKMTMDNMHEDG  PGDFGFDP+ L+ KPA VREKYQLQEIKNGRLAMSAIGGL+HQSLLL GGVPFHA
Sbjct:    1 MKVISTVGAGLACASCASAFVAPSSFSRVISSSPAASKALRMAEEVAAEPEAAVEPEPVPAGPAMSASIPFLEQPKNLEGMVGDIGFDPFGFATIFPVKFMREAELKHGRVAMLAVVGWLVSEVVHVPGAAYMSENPVDAMAAVGPGPMLQIFLFCGFLEWKFHNGKMTMDNMHEDGNEPGDFGFDPMMLAKKPADVREKYQLQEIKNGRLAMSAIGGLIHQSLLLGGGVPFHA 234
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A835Z4D2_9STRA (Chlorophyll a/b-binding protein domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4D2_9STRA)

HSP 1 Score: 230 bits (587), Expect = 3.520e-69
Identity = 111/169 (65.68%), Postives = 131/169 (77.51%), Query Frame = 1 
Query:  196 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFH 702
            MSKSLPFL +PK L+G V +  FDPF  S   P  F+RE+ELKHGR+AMLAVVG++VSEL+H+PG AYQ+ NPVDA+  VG  PMLQIF FCGFLE  FH GKMTM +MH DGQ PGDFGFDPL +S  PA + + YQL EIKNGRLAM AI GL+HQS++   GVPF+
Sbjct:    1 MSKSLPFLVKPKQLDGWVGNAEFDPFSLSELLPMAFVRESELKHGRIAMLAVVGFVVSELIHIPGEAYQASNPVDAVNMVGAQPMLQIFAFCGFLESVFHKGKMTMMDMHADGQTPGDFGFDPLNVSKDPAKLAQ-YQLSEIKNGRLAMMAISGLIHQSIITGHGVPFN 168
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A6V1U3D5_HETAK (Hypothetical protein n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1U3D5_HETAK)

HSP 1 Score: 203 bits (516), Expect = 8.640e-59
Identity = 102/162 (62.96%), Postives = 122/162 (75.31%), Query Frame = 1 
Query:  196 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQ-VPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLL 678
            MSKS+PFL  PKN  GM+ D GFDPFGFS  F  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AYQS NP+DA++ VGP P+ QIF FCGFLE+  + GKMTM +M ED +  PG  GFDP+ L        E+ QL+E++NGRLAM AIGGLVH  LL
Sbjct:    1 MSKSMPFLAAPKNTAGMIGDKGFDPFGFSDDFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIDALSMVGPQPLAQIFLFCGFLEFTMNKGKMTMLDMFEDKERKPGFLGFDPMNLGK--GGPSEEMQLKELENGRLAMCAIGGLVHHFLL 160
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: W7TJ16_9STRA (Light-harvesting protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ16_9STRA)

HSP 1 Score: 182 bits (462), Expect = 3.340e-49
Identity = 94/171 (54.97%), Postives = 119/171 (69.59%), Query Frame = 1 
Query:  169 APPAPVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQ-VPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLL 678
            A P PV    SKS+PFL +PKNL+GMV DVGFDP G +     +++REAELK+GRVAMLA +G++V E + +PG  Y   N V A   VGP P++QIF FCGFLE+  H GKMT  +M  DG+  PG+FGFDPL     P+  RE+  L E+KNGRLAM AIGGL+H +L+
Sbjct:  121 AKPQPV---FSKSVPFLLKPKNLDGMVGDVGFDPLGLAEYVDIRWLREAELKNGRVAMLAFLGFVVQEFIRLPGDLYSEPNGVKAFFQVGPQPLIQIFLFCGFLEFTLHKGKMTQMDMFADGKREPGNFGFDPLGFGKDPSK-RERLALAELKNGRLAMIAIGGLIHHALV 287
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A7S4DC05_HETAK (Hypothetical protein (Fragment) n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DC05_HETAK)

HSP 1 Score: 178 bits (451), Expect = 3.890e-49
Identity = 87/140 (62.14%), Postives = 106/140 (75.71%), Query Frame = 1 
Query:  157 VVEEAPPAPVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQ-VPGDFGFDPLRL 573
            + EE   AP  + MSKS+PFL  PKN  GM+ D GFDPFGFS TF  K+MREAELKHGRV+MLAVVG+LVS+ VH+PG AYQS NP++A++ VGP P+ QIF FCGFLE+  + GKMTM +M ED +  PG  GFDP+ L
Sbjct:   32 MAEEGAAAPAPMEMSKSMPFLAAPKNTAGMIGDKGFDPFGFSDTFDIKWMREAELKHGRVSMLAVVGFLVSQAVHLPGPAYQSTNPIEALSMVGPQPLAQIFLFCGFLEFTQNKGKMTMLDMFEDKERKPGFLGFDPMNL 171
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A1Z5JQG8_FISSO (Light-harvesting complex I chlorophyll a/b binding protein 4 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQG8_FISSO)

HSP 1 Score: 164 bits (415), Expect = 1.120e-43
Identity = 87/163 (53.37%), Postives = 115/163 (70.55%), Query Frame = 1 
Query:  196 MSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDG-QVPGDFGFDPLRLST-KPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLL 678
            MSKS+PFLT PKN  G V DVGFDP GFS  F  K++RE+E+KH R AMLA +G++V + V +PG      + + A AAVGP PMLQIFF  G LE+  +NGK+T++NM  D  +VPG+FGFDPL ++  K A      +L+EIKNGRLAM AIGG++  +++
Sbjct:   32 MSKSIPFLTAPKNTAGWVGDVGFDPLGFSDYFDMKWLRESEIKHSRAAMLASLGFMVQQFVTLPGMP-DVDDSMLAPAAVGPSPMLQIFFGLGVLEFWSNNGKVTIENMFSDSSRVPGNFGFDPLGMAKGKSAEAMADMELKEIKNGRLAMCAIGGMMAHNIV 193
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 165 bits (417), Expect = 1.340e-43
Identity = 83/167 (49.70%), Postives = 112/167 (67.07%), Query Frame = 1 
Query:  199 SKSLPFLTQPKNLEGMV-ADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMT-MDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 693
            S S+PFL +PKNL+G    DVGFDP   S     +++RE+E+KHGR+ MLA VG++V E VH+PG  + ++  +DA+  V  G + QIF F G LE+  + GKMT +D   +  + PGDFGFDPL L   P A R++Y++ EIKNGRLAM A+GG +H  LL H GV
Sbjct:   49 SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQA-RKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGV 214
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 161 bits (408), Expect = 1.560e-42
Identity = 83/166 (50.00%), Postives = 108/166 (65.06%), Query Frame = 1 
Query:  199 SKSLPFLTQPKNL-EGMVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 693
            S S+PFL++P N+ E MV   GFDP G ST   A+F++E+E+KHGR+ MLAVVG+LV E+VH+PG  + ++   +A + V  G + QIF  CG  E+  H GKMT  ++  D   PG  GFDPL L   P   + K+QL EIKNGRLAM AIGG +HQ  L   GV
Sbjct:   34 SASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFK-KFQLNEIKNGRLAMIAIGGFIHQMWLTKQGV 198
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: Q9FDZ6_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 161 bits (407), Expect = 3.780e-42
Identity = 82/167 (49.10%), Postives = 109/167 (65.27%), Query Frame = 1 
Query:  199 SKSLPFLTQPKNLEGMV-ADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGFLEWKFHNGKMT-MDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGV 693
            S S+PFL +P+NL+G    DVGFDP   S     +++RE+E+KHGR+AMLA +G++V E VH+PG  + ++  VDA   V  G + QIF F G LE+  + GKMT +D   +  + PGDFGFDPL L   P   R +YQ+ EIKNGRLAM A+GG +H   L H GV
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQT-RRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGV 213
[Close]
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Match: L1IG53_GUITC (Light-harvesting Chl a protein 9 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG53_GUITC)

HSP 1 Score: 160 bits (404), Expect = 7.770e-42
Identity = 88/184 (47.83%), Postives = 120/184 (65.22%), Query Frame = 1 
Query:  196 MSKSLPFLTQPKNLEG-MVADVGFDPFGFSTTFPAKFMREAELKHGRVAMLAVVGWLVSELVHVPGAAYQSQNPV--DAMAAVGPGPMLQIFFFCGFLEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKNGRLAMSAIGGLVHQSLLLHGGVPFHA*NKQNTNKRYN 738
            MS+S+PFL +P  L+G MV DVGFDPFGFS+ +  K++RE+ELKHGRV MLA +G++V E VH+P  A  + NPV  +A   V  G + QIF F G +E   HN KM+   M  DG+ PG+FGFDPL     P A R +Y+L E+KNGRLAM    G++H S +   G P +A    + ++++N
Sbjct:   41 MSQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEA--TSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDGRTPGNFGFDPLGFGKNPQA-RARYELAELKNGRLAMLGFSGMIHGSFITGKG-PINALLTLDWHQKFN 220
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6226.14819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCR7_ECTSI1.770e-11979.91Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
A0A835Z4D2_9STRA3.520e-6965.68Chlorophyll a/b-binding protein domain-containing ... [more]
A0A6V1U3D5_HETAK8.640e-5962.96Hypothetical protein n=3 Tax=Heterosigma akashiwo ... [more]
W7TJ16_9STRA3.340e-4954.97Light-harvesting protein n=1 Tax=Nannochloropsis g... [more]
A0A7S4DC05_HETAK3.890e-4962.14Hypothetical protein (Fragment) n=3 Tax=Heterosigm... [more]
A0A1Z5JQG8_FISSO1.120e-4353.37Light-harvesting complex I chlorophyll a/b binding... [more]
M2VTV2_GALSU1.340e-4349.70Light-harvesting complex protein n=1 Tax=Galdieria... [more]
A0A7S0T6N2_9RHOD1.560e-4250.00Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
Q9FDZ6_GALSU3.780e-4249.10Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
L1IG53_GUITC7.770e-4247.83Light-harvesting Chl a protein 9 n=2 Tax=Guillardi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6226contigL-elsbetiae_contig6226:599..6041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score363.2
Seed ortholog evalue8.7e-98
Seed eggNOG ortholog2880.D8LCR7
Preferred nameLhcr1
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2D9V2@1,2S5EH@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-03_001900.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons2
Model size1803
Cds size681
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6226.14819.1prot_L-elsbetiae_contig6226.14819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6226 626..4946 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.9298503-UTR-L-elsbetiae_contig6226:598..6251622816683.9298503-UTR-L-elsbetiae_contig6226:598..625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6226 599..625 +
1691683738.0077612-UTR-L-elsbetiae_contig6226:598..6251691683738.0077612-UTR-L-elsbetiae_contig6226:598..625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6226 599..625 +
1622816683.9622903-UTR-L-elsbetiae_contig6226:4946..60411622816683.9622903-UTR-L-elsbetiae_contig6226:4946..6041Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6226 4947..6041 +
1691683738.0474353-UTR-L-elsbetiae_contig6226:4946..60411691683738.0474353-UTR-L-elsbetiae_contig6226:4946..6041Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6226 4947..6041 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.9403093-CDS-L-elsbetiae_contig6226:625..10961622816683.9403093-CDS-L-elsbetiae_contig6226:625..1096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6226 626..1096 +
1691683738.021432-CDS-L-elsbetiae_contig6226:625..10961691683738.021432-CDS-L-elsbetiae_contig6226:625..1096Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6226 626..1096 +
1622816683.951501-CDS-L-elsbetiae_contig6226:4736..49461622816683.951501-CDS-L-elsbetiae_contig6226:4736..4946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6226 4737..4946 +
1691683738.0375636-CDS-L-elsbetiae_contig6226:4736..49461691683738.0375636-CDS-L-elsbetiae_contig6226:4736..4946Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6226 4737..4946 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6226.14819.1

>prot_L-elsbetiae_contig6226.14819.1 ID=prot_L-elsbetiae_contig6226.14819.1|Name=mRNA_L-elsbetiae_contig6226.14819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp
MKVLSTVGAMTACASCASAFVTPSSISRVITSSPLRMSDAAAAVVEEAPP
APVKVAMSKSLPFLTQPKNLEGMVADVGFDPFGFSTTFPAKFMREAELKH
GRVAMLAVVGWLVSELVHVPGAAYQSQNPVDAMAAVGPGPMLQIFFFCGF
LEWKFHNGKMTMDNMHEDGQVPGDFGFDPLRLSTKPAAVREKYQLQEIKN
GRLAMSAIGGLVHQSLLLHGGVPFHA*
back to top

mRNA from alignment at L-elsbetiae_contig6226:599..6041+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6226.14819.1 ID=mRNA_L-elsbetiae_contig6226.14819.1|Name=mRNA_L-elsbetiae_contig6226.14819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5443bp|location=Sequence derived from alignment at L-elsbetiae_contig6226:599..6041+ (Laminarionema elsbetiae ELsaHSoW15)
CCTACACCTCCCCACTCCGAAGCAACAATGAAGGTCCTTTCCACTGTAGG
CGCGATGACCGCGTGCGCTTCGTGCGCGAGCGCGTTCGTAACCCCTTCCT
CTATTTCGCGAGTGATCACAAGCTCCCCCCTACGCATGTCGGACGCCGCA
GCTGCCGTCGTCGAGGAGGCACCGCCGGCGCCCGTGAAGGTCGCTATGTC
CAAGTCCCTCCCTTTCTTGACGCAGCCCAAGAACCTCGAGGGTATGGTGG
CCGACGTCGGCTTCGACCCCTTCGGGTTCTCGACGACCTTCCCCGCGAAG
TTCATGAGGGAGGCAGAGCTCAAGCACGGGCGAGTCGCAATGCTTGCGGT
GGTGGGATGGCTCGTTTCGGAGTTGGTGCACGTCCCGGGCGCGGCGTACC
AGTCGCAAAACCCCGTGGACGCGATGGCGGCGGTTGGACCGGGCCCGATG
CTGCAGATCTTCTTCTTCTGCGGGTTCCTGGAGTGGAAATTCCACAACGT
GAGTGCCTCTGCTCTGCTGTTGCGTGGTGACTTTTTTGACATGTATGTTT
TTTCAGTAAACTCTTCCTGCTTTCCCATGCCGGATGACGTAATATGTGTT
GAGCCACAGGGTGCGCGGAAGGTTGCAGATTTATTTACCGCTTTCCGGCC
CACCGCTTCGCCTCTTGTGCCTGTGATTGCTGCTTTGGACACAATGCATC
TCCGATACACCCCTGCAAGTATTTGGTAGACTACCATGTAGGTGCTGCTC
GATGGCGACACCTACGAATGCTGTCGAACTTCACCATATCGTGCGCGGGA
GAGGCGGAATCGTCCGAGAAGCTGCCAATAGATATATATACACTCTGTGC
TTGCCATCAAATGTTTCGTAACAGGTACTGAAAACCACATACATATATAG
AAGTTCATGTACCAGTAGGTCCACAAATACCCAGCAAAGCTCATCTCTCG
TTGGTACTTGCAGTAGTATACTGCTTACCGGAAGCCGGAAGACCTACCAA
CCGTACAACAGCAGTAGCAGCGGCGGCTGTATCTTGATATTCGAAGCGTC
GGGTTTTGTTGTCCGCAGCGACAGCGATGAGGTTGGTTGTGGTGTTCCGT
TCTGTACTGCTGTCGGCTCAAGCGCGTGGTATTCGCACCACCTTTATTTT
AGTCCCAAGACTATCGACGCACTTGGCCGATTTTGGTGCGTGTGCGTGCT
GCATTTGCAGGTGTACAGCAGCAGTATTCGGTGTTGCCTGCCAATCGGGT
CTTGTCGCAGAAGCAGCTGGTGCCGTTGGCCATGTTTTCAACAATTTTCC
TGCATGCGGCAGAAAATACATTGTTTTTTACTTCCATCATGATGAGGTTG
GGACGGCCGACGTCCACAAACCAAACATACACCGCGCCACCACCTCTCTG
AGGCAAACTGCAAACAGGGTCTGTCTCAGATTCAAGCACAGGCGGTCTAA
AAAAAAATGCCCGACGGAGAACACGAATGTTTGGTATTCATATTCATAGT
GTTCATCCCCACAGCTGTTTTGCCGCACTTTGCGCTCTGACGATGCCAAA
GCACGCTTCCCCCCCGTGTGTGTGGTGTATTTTATCCCATTTATTCGGGC
CCCTGCATGCGTTTTTTTGTGTGTACAACATGCACGCTGGTGTTGATCCT
TTGTACAGCATGACGTATCCGCCGGGGTCACACAGGAGGGGGTAGACACC
GGGGCCTTTTTCTTTTTTGCCCCATCTTCCTCCTGCGGCGCTTTCTTTGC
TTAAATATTTAGTTTTTTGTCGCGAAAAGGGTCCGGCTATTCCTTCCCTC
GTCGCGTGCTTACCGAAAAAGCATGGCCATGTGTGTATCAAAAACCAGAG
GGTGTGTACTACAATCGCCTGGGACGGTTGGTGCGCCCAAAAAAACAAAA
ACGAGCCGTCATCGACAATTCCACCGTTCCCCGGCTCAATTTTTTCTCCA
GTTTTCAGTTGAGAGAGCACGGCATGTGTCTCGTGTAGGTTGATGTGTGT
ACATCTATCTGTGGGGTGCTATTCTACAAAAGAGCGAACGGACCGGATCG
CCGCCGACGCATCGCACACCACACTCTTGCATCCAGCTTCCGTCTGTAGC
AACGGAACGGGACGGTTTTGTGGGCGTATTGGCAGCCGCTCCGCCGCGTA
AACATTGTTCTCCACCAATCGAGCACCCTCTGCACGCACGTGCGTGGCTC
CTTAGCCGGGTAGTAGAAATACAGCAGGCCTGCTGGCGTTCCACGTAGGA
ACAAAGAGTTCATTCCCTAAATCTACGGTGAACCGGCGAAAGGAAAAACC
AACACAAGTTAATCCGCACGTCTGTATGCATCGTGTCAGTCGGTCACCAG
TGGCACATGTACGTACTTTCACGCGGAACGGGCAGAATCTGACATCAAAC
CACGTCGATTTATCTCGACATTGCAGCCCGGACGGACTTGGTGAACCACG
ACTTTTTCATAGTTTGTTCTGCAAGAGTATCTCGACAGTAATATATTACT
CGTGCAGAACAGCCCATAAACGCATGGTCGTAGATATGTCTGCCACTCTG
TTTACCCGGTGCGGCCGGGAATACGCGCTTGTCTTGAGCAACGCGGAAGT
CGGCATTGCTCTTGTTTTCCCCACCATCTATTCTCTTGAATACGAAACAA
TTTCCGGGATGATTCAACGATGAGCCCGGAGCGATCGTTCACCACCACGG
TAAAAATCGACATGGAGTTTGTTCGCACGGCAACAAATCACGTTATGACG
GCGCCAAAGCCAACTCAAAGGGCTGCGACAAGGAGGCTTTTACTGCTGTA
GATTCCTGCTGTGCCCCCAACCTCGTGTTGTTGCTACAATAAATAGGTTG
GTTTTGTCGGACGATGCTCGTTTTTTTTTTTCAACGTTGCAGTTGCGGCA
GGCCATCTCTTTGCCCCTCTTTCCCCATAGCTTTTGTCGGAAATTACCCA
TGGGCCTGTGATGGCACTGGCCGCTGTGATGGTTTGATCACCCGCGCAAA
AAAACGATGCGTGTTGAGGTGGCGGCATCGGCTGAATATGGTCTGGGTTT
TTTTAACTTGGCGGTGAAAAAAAAACAGAAACCAGGAATGTGTCTCTCGA
ACATATCCTGAGGCTTTTGACGTGCGCCAAAAAAACTATTGATGGTGAAA
CTTCCCGACACAGAAATCCTCTCAGCCTACTATAGACATTCGGCACGGAG
TAGCAATTCATTTCGCGGAACAGAAAAGCAAGTGCTACAGCCCCGGTCAA
CCGACCTCCCTATTTAAGGCATGTTTTTCCCTGTTGGTTTGTGTTCTGTC
AATTCGTTTGTTACATGCTTTTGAACTGAGAACCCTTAATATTTCTGTGT
ACGCCTGAGTCCAAACAGGCTGTCGTGTTTGGTTAAAGTACGGCCATCCG
TCTTCATAGCTCGTCGACCTCGGGACAAATTCTGCCGTTCCCCCGTGTAC
ACGAATGCCCCCCCACTCCTCCCGGGCTTGTCGGGACGACAATCGCTTTC
AACGTCTGTTGTTTTGGGTGTGTATCCTCCAAACTAGCGACGGGTATATA
TGGCCGCTGCCGTAGTTGTTGGGTTTCTGCAGGCCTTTGTCCTTTGTCTG
TTCTCGCTGTGATGCACAAGCCTTGACAACGCTCCAGCTTGTTGCTGGCC
CGAACTTGCTGAGCGCTAGTAGAGCACACAGTGCGCGAGTCTAGTTGCTC
GTTTCTGATGTATGTATGCACCCCGAGTTGTTCGGCTGGTTGCCCCGGCC
ATTTGCCAAACGAAGACTCTGCGTGCTTCGCCCTCAACGCCTTGCATAAA
CTCACTCTCTCAAAACGCTACCGCTAGTACACGGCGGCATGAACCCCCCC
CCCCCCTCCCCTTTTCGACCACATGCAATATTCTCCCTACGCGTTACACC
CGCTCGGACATTCAGCACTCTAGAGGCACGCTTTCCCCTGAAACCACCGT
CCAACCCCACTTATCACTCCCCTAGCTCTTTTGTCCCCGTCATGGACCCA
CACAAATTATTTGCGGCGAAAGAGGTGACCATGCCACCCGGTGGGGTAAA
AATCCTCGAAATGGAATAAAAAAATACGCGACCCACTCAACAACTGAACA
ATGACCGCGACGAACGATCCGATCAAAAAACCGTGCAGGGCAAGATGACC
ATGGACAACATGCACGAGGACGGGCAGGTGCCCGGTGACTTCGGATTCGA
CCCGCTAAGGCTCAGCACCAAGCCCGCCGCCGTGCGCGAAAAGTACCAGT
TGCAGGAGATCAAGAACGGACGCCTGGCTATGTCGGCCATCGGCGGACTC
GTCCACCAGTCGCTTCTGCTCCACGGCGGCGTTCCTTTCCACGCGTAAAA
CAAACAAAACACAAACAAACGGTACAACACCGACTTTTTTTGTTGGGGTG
TTTTCTTTTATTTTTCTCTCGTTGTTGCCCCACCTGCCCCTCATTCCGCA
TTTTTGAAAAAAGTGCAACGGTTTGAACTAGATTGGGGTGTTGATTGAGC
CCAAACAAACCACCTGGCTTGATTCAGTTGATGATTCTCGAGTCCACCTC
GTTGTATTTCGGTGTGTGGCTTGTTAAGCCGGAGAAACTAGCCGCTCGCC
TGCAGGGCGGAGTACGACTGGCTTGGCTGTGTCGGAACCGTTTGTTCCTT
GGCTCCCGGTGTGAAGGGTTGCAGTTGAGATTGACCGTTTTCCGTGACTG
CTGTGATTGTGAGCAGAGATGGAAGGAGGCGTCTTGTGTTGCGGAGGCTA
GTTCAGCATATGTAGCGCCGGCTGCCGCTACCTTTACGAGCGGGGGTTAA
AATTGCGAGCATTGATTGTGTTTGTTTGTCGGGGTGCGAGATTTTGTACG
TGCTCTCTTTTTGTCCCGCTTTCGGTTGGTTGTTCGCCTTGTTGCTGTTT
CTTTGTTCGGAGGTACAGCAGCAGGAGAGTGAGAGGAGTGGGGCTGATTT
TGTTTTCAGTGGGATGGCGCACGCTGCGTCACCGTGCCCCCCCCCGATTG
GCTTGACTTGAGATGACCCACGCGTGTTCTCGGCCCTCTTTTTGTCCCTG
ATGTTAATTCTGGACGAATTTTAAGCAGTGAGGAGACTATTGCTTCGCCC
TCCTCATCTGCGCTTTAATGAAAACACGTTTCGATCACCTTGGTTGCTTT
TTTGTTGTTGCGGGGAAGTCTTGGTGGCAAGTGCAGTGACGTCTGCCTCT
CCTCTTGGGTTGGCCCGTTGCGATATCTTATCACGTCTTCTGCATCGCAT
GTGCCAATGGTTGTGCTCGCGGATAGGCACTGCTTTCGTACGCCGCACTG
CTGCACACTCAATTGAGCAGGCCCTTCCTCGCGATTATATTCGTTGGTCT
CTAAAAGACGATCCGAAAGAAACACTTGACACAGCGGAAGATGAGTTTTT
TTTCCGTTCTCGTGCGGTCTCCGGCAATATCGTCACACCCATT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6226:599..6041+

>mRNA_L-elsbetiae_contig6226.14819.1 ID=mRNA_L-elsbetiae_contig6226.14819.1|Name=mRNA_L-elsbetiae_contig6226.14819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig6226:599..6041+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTCCTTTCCACTGTAGGCGCGATGACCGCGTGCGCTTCGTGCGC
GAGCGCGTTCGTAACCCCTTCCTCTATTTCGCGAGTGATCACAAGCTCCC
CCCTACGCATGTCGGACGCCGCAGCTGCCGTCGTCGAGGAGGCACCGCCG
GCGCCCGTGAAGGTCGCTATGTCCAAGTCCCTCCCTTTCTTGACGCAGCC
CAAGAACCTCGAGGGTATGGTGGCCGACGTCGGCTTCGACCCCTTCGGGT
TCTCGACGACCTTCCCCGCGAAGTTCATGAGGGAGGCAGAGCTCAAGCAC
GGGCGAGTCGCAATGCTTGCGGTGGTGGGATGGCTCGTTTCGGAGTTGGT
GCACGTCCCGGGCGCGGCGTACCAGTCGCAAAACCCCGTGGACGCGATGG
CGGCGGTTGGACCGGGCCCGATGCTGCAGATCTTCTTCTTCTGCGGGTTC
CTGGAGTGGAAATTCCACAACATGAAGGTCCTTTCCACTGTAGGCGCGAT
GACCGCGTGCGCTTCGTGCGCGAGCGCGTTCGTAACCCCTTCCTCTATTT
CGCGAGTGATCACAAGCTCCCCCCTACGCATGTCGGACGCCGCAGCTGCC
GTCGTCGAGGAGGCACCGCCGGCGCCCGTGAAGGTCGCTATGTCCAAGTC
CCTCCCTTTCTTGACGCAGCCCAAGAACCTCGAGGGTATGGTGGCCGACG
TCGGCTTCGACCCCTTCGGGTTCTCGACGACCTTCCCCGCGAAGTTCATG
AGGGAGGCAGAGCTCAAGCACGGGCGAGTCGCAATGCTTGCGGTGGTGGG
ATGGCTCGTTTCGGAGTTGGTGCACGTCCCGGGCGCGGCGTACCAGTCGC
AAAACCCCGTGGACGCGATGGCGGCGGTTGGACCGGGCCCGATGCTGCAG
ATCTTCTTCTTCTGCGGGTTCCTGGAGTGGAAATTCCACAACGGCAAGAT
GACCATGGACAACATGCACGAGGACGGGCAGGTGCCCGGTGACTTCGGAT
TCGACCCGCTAAGGCTCAGCACCAAGCCCGCCGCCGTGCGCGAAAAGTAC
CAGTTGCAGGAGATCAAGAACGGACGCCTGGCTATGTCGGCCATCGGCGG
ACTCGTCCACCAGTCGCTTCTGCTCCACGGCGGCGTTCCTTTCCACGCGT
AAGGCAAGATGACCATGGACAACATGCACGAGGACGGGCAGGTGCCCGGT
GACTTCGGATTCGACCCGCTAAGGCTCAGCACCAAGCCCGCCGCCGTGCG
CGAAAAGTACCAGTTGCAGGAGATCAAGAACGGACGCCTGGCTATGTCGG
CCATCGGCGGACTCGTCCACCAGTCGCTTCTGCTCCACGGCGGCGTTCCT
TTCCACGCGTAA
back to top