mRNA_L-elsbetiae_contig6223.14817.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6223.14817.1
Unique NamemRNA_L-elsbetiae_contig6223.14817.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: D8LTQ8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTQ8_ECTSI)

HSP 1 Score: 214 bits (544), Expect = 2.850e-58
Identity = 161/410 (39.27%), Postives = 215/410 (52.44%), Query Frame = 1
Query:  343 VLGANLSLRVKTHFKIGWDICAALDLAAYYEWTDIMEVLIQHGSDVNARGWRNLTALGKAAEGNKVDAIDVLIEAGAVIHGPAGFDSVLHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATVCTPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAIGREHLEDA---LELVNCLLLAGADETAMNDEGKTPASN-IPLEPSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAFPEKAVRATGSRTTKLPRVAAVGGVAAATVGQDSIDGDDNFRGMVANLFSLREGKKELFRQII 1560
            V GA+ S R   +     D  AALD+A++Y    +ME L++HG+D + R WRNLTAL KAAEGN+ +AIDVLI+AGAVI GPAGFDS +                RHGAD +  +E   TPL RAV  R+L  V ALLAAG +PN SG ++T+L+AS+  ++ S  D  ++  LL  GA+VNA + D +T LHAAA+  +   V   V  GA V                                       XXXXXX  A+G E  ++    LEL+  L+ AGAD+ A N +  TP S  + L        DA  E++H+ L+R+        W RRG++  CHA  E+ V        K+ RV   G  AA           D+FRG+VANLFSLR G +E+FR I+
Sbjct:  255 VAGADTSCRAMAYLCEERDSFAALDIASFYGNVSMMETLLKHGADPSTRSWRNLTALHKAAEGNEAEAIDVLIKAGAVISGPAGFDSPVXXXXXXXXXXXXXXXXRHGADLDWHEEAGTTPLFRAVQWRYLEAVKALLAAGANPNISGNSETVLFASISSEI-SEIDWGVLLALLESGAKVNAANDDSDTPLHAAAKC-DPWAVHALVRLGAKVVPD--SNGRTPLHAACSFHNLETVAALLTHGPAINALDQXXXXXXXMAVGAEAGDNGGSKLELLEMLVAAGADQLAKNKDDDTPVSKALSLSRYDVENNDATFEQIHQYLVRS-------LWWRRGLLLACHARLEQEV-----GRNKVARVEEAGDAAA-----------DDFRGLVANLFSLRGGNEEIFRNIL 637          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: A0A6H5JN84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN84_9PHAE)

HSP 1 Score: 100 bits (249), Expect = 1.470e-18
Identity = 126/416 (30.29%), Postives = 174/416 (41.83%), Query Frame = 1
Query:  397 DICAALDLAAYYEWTD-IMEVLIQHGSDVNARGWRNLTALGKAAEGNKVDAIDVLIEAGAVIHGPAGFDSVLHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHG----ARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATVCTPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAIGREHLEDALE-----------LVNCLLLAGADETAMNDEGKTPASNIPLEPSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAFPEK----------------AVRA------TGSRTTKLPRVAAVGGVAAATVGQDSIDGDDNFRGMVANLFSLRE 1530
            D  AAL LA   E  D  M++LIQHG+DVNAR     TAL +AA  NKVD ID+LI AGA+I  P    S     + V   +A++   +                  + G++    +  LL  G  PN     +   ++ +   +   C   + + LLA G    A  N  +  G TALH AAE  N   ++  + AGA                                   XXXXXXXXXXXX A I   HL  A +            ++ LL  GADE A+N  G+TP +        HR   A R  V ++    P D+A   WRRRG + LC A P +                ++RA      +GS +T +P V   GGV   ++ ++ I G      +VA +  L E
Sbjct:  485 DGSAALSLATLSEHVDGTMKILIQHGADVNARNTNGFTALHRAAMYNKVDGIDLLISAGAIIEAPDNHKS---TPLAVTFREAVYRWKKE----------------HSCGLQDFAAMITLLKHGADPNIGNIQEGCPHSLLWYFVRCGCPISVFRELLAAGPNLDADTNVQTKRGKTALHMAAEDDNGVCIEALISAGAXX---------------------------------XXXXXXXXXXXXXATINPLHLAAARDQRDFGDSAVPTTIDLLLRWGADENAVNSAGRTPVTVWRRNGYVHRLPAASRTSVPKMFHWIPRDKA---WRRRGWLVLCRALPNRVRLKADDAGTCSGAGQSLRARRVGAGSGSCSTSVPPVGKAGGVPVGSLPREKIAG--GLSALVAKVVGLHE 843          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.130e-13
Identity = 99/348 (28.45%), Postives = 141/348 (40.52%), Query Frame = 1
Query:  508 ALGKAAEGNKVDA-----IDVLIEAGAVIHGPAGFDSVLHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATV-------CTPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAIGREHLEDALELVNCLLLAGADETAMNDEGKTPASNIP--LEPSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAF--PEKAVRATGSRTTKL-PRVAAVG-GVAAATVGQDSIDGDDNFR 1497
            AL +A +   VD      I V+ +  +++         LHV         +  L+  GA     D    TPL  AV   HL TV ALLAA    +         Y+ +D       D  +++ +L HG  VN   +DG T+LH AA       +D+ VEAGA V       CTP +                                          A  +   +    +V+ LL  GADETA+N +G+T A  +   +E +         E+V +LL  APADRA   WRRRG++ LC AF    + +RA  S    + PR  +V  GV  +  G +  + DD  R
Sbjct:   53 ALKEAVDSGHVDESAVKPILVMAKVASLLSESVDSSDQLHVSASQGQEVRVATLLAEGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVHYRIWNRSYSVLDFAAQKG-DACVLRAILQHGVDVNR-RTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPL--------IIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDLERVRDLLENAPADRA---WRRRGLLVLCRAFWIKSRRLRAASSSARGIGPRAMSVSIGVRVSVAGGELREDDDKGR 387          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 4.520e-12
Identity = 110/404 (27.23%), Postives = 153/404 (37.87%), Query Frame = 1
Query:  265 ARTSRGVTPLMLATVENQAPAVEALCVLGANLSLRVKTHFKIGWDICAALDLAAYYEWT--DIMEVLIQHGSDVNARGWRNLTALGKAAEGNKVDAIDVLIEAGAVIHGPAGFDSVLHVGVEVKAIQ-------------AIHALVRHGADPE*SD-------------ELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTD---TLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATVCTPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAIGREHLEDAL--ELVNCLLLAGADETAMNDEGKTPASNIPLEPSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAFP 1377
            A T++G TPL L        A   L   GA++     +      D  AA  LA   ++    IM VLIQHG DVN +     +AL +AA  + +D IDVLI AGA+I       S+       +A+              A+ AL++HGA P   +             E  E P+           +  LLA G  PN     D   T L  S D         ++   LL HGA  N  +  G TALH AAE  N   ++    AG +                                               +A  R    D+     ++ LL  GADE A++  G TP +      S +    A ++ V ++  RAP D+    WR+RG + LC AFP
Sbjct:  404 ALTAKGRTPLGLTAEFGCEDATVVLLDAGADVKAPANSA-----DGSAAPSLATLNDFNADGIMNVLIQHGVDVNGKNNEEFSALHRAAYHDDIDCIDVLISAGAIIEATDNHKSMPLAVAFREAVDRGKGDNSGAGEFAAMIALLKHGAYPNIGNKGKGYSNYLLYYLERCECPIF---------VLRELLAVG--PNLDVRADDGYTPLTVSQDHP-------ELFTELLLHGADTNVQTKRGATALHKAAENNNGVCIEALTSAGTST------------------SIKDNDGRTPFQLATICHSRSVMRMLLRSAHDRCDSRDSAMATTIDLLLRWGADENAVDSLGNTPLTVWRENESTYTLSWANKQSVKKIFKRAPRDKR---WRQRGWLVLCRAFP 763          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: D7G6X8_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6X8_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 5.300e-12
Identity = 89/309 (28.80%), Postives = 126/309 (40.78%), Query Frame = 1
Query:  538 VDAIDVLIEAGAVIHGPAGFDSVLHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATV-------CTPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAIGREHLEDALELVNCLLLAGADETAMNDEGKTPASNIP--LEPSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAFPEKAVR---ATGSRTTKLPRV 1428
            V+ I V+ +  ++ +        LHV         +  L+  GA     D    TPL  AV   HL TV ALLAA    +         Y+ +D       D  +++ +L HG  VN   +DG T+LH AA       +D+ VEAGA V       CTP +                                          A  +   +    +V+ LL  GADETA+N +G+T A  +   +E +         E+V +LL  AP DRA   WRRRG + LC AF  KA R   A+ + ++  PRV
Sbjct:   19 VEPILVVAKVASLQYASVDSSDQLHVAASQGQEGRVATLLAGGAKKNGLDAQGRTPLHLAVENGHLSTVKALLAADPDTSVRYRIWNRSYSVLDLAAQKG-DACVLRAILQHGVDVNR-RTDGYTSLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACINHCHEAALALYKHGSNIEARDIRGETPL--------IIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGHHIEYAACPLNKQDVERVRDLLENAPVDRA---WRRRGFLVLCRAFWIKARRLRAASSNASSNGPRV 314          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: D7G137_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G137_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 1.210e-8
Identity = 91/186 (48.92%), Postives = 116/186 (62.37%), Query Frame = 1
Query:  832 SNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATVCTPCMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFAAIGREHLEDALELVNCLLLAGADETAMNDEGKTPASNIPLE--PSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAFPEK 1383
            S+ D +I++ L+ HG  VN  ++ G TALH AA+   ++ +D+ V AGA +    M      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX           ++++V  LL  GADET +  +GKT A  I     PS     D   E+   LL RAPADRA   WRRRG++ LCHA+P++
Sbjct:  179 SSQDVEILRMLIDHGMEVNLAAAFG-TALHWAAKANRANAIDVLVGAGADIQARNMSGSRPLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKVGQRRGSVQVVGLLLRWGADETIVCKQGKTAADRIGTRRFPSTEPGDD---ERARSLLTRAPADRA---WRRRGLLVLCHAYPDR 357          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: A0A6H5JT48_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT48_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 1.300e-7
Identity = 64/198 (32.32%), Postives = 91/198 (45.96%), Query Frame = 1
Query:  397 DICAALDLAAYYE-WTDIMEVLIQHGSDVNARGWRNLTALGKAAEGNKVDAIDVLIEAGAVIHGPAG-FDSVLHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATV 984
            +  +AL LAA    + ++M+ LI+HG DVNA      TAL  AA G+KV AID LIEAGA I+   G +D       + ++   +H     G +         + L  A    H+ TV +LLAAG + +        L  S  +        D+        A+V+A  S G TAL   +      V+D  V AGA+V
Sbjct:  141 EALSALGLAASSGGYVEVMQALIRHGVDVNAHDSNGCTALHSAAMGDKVGAIDTLIEAGANINVQRGKYD-------DARSTPPLHMASEKGYE-------RYSALRLATCSGHIATVKSLLAAGANVDLRPAA---LCKSAFDSACLGGHADVXXXXXXXXAKVDATDSCGRTALFDVSRENTVTVIDKVVAAGASV 321          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: D7G1U1_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1U1_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 5.040e-7
Identity = 37/87 (42.53%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 1123 AAIGREHLEDALELVNCLLLAGADETAMNDEGKTPASNIPLEPSGHRAGDAIREKVHELLLRAPADRADRSWRRRGMVFLCHAFPEK 1383
            AA+G+ H   + ++V+ LL  GADET ++ +G+T A +I      HR      E+   LL RAPADRA   WRRRG++ LC A P++
Sbjct:  281 AAVGQRH--GSAQVVDLLLRWGADETIVSKQGETAADSIGTRRC-HRTDPEDDERARSLLARAPADRA---WRRRGLLVLCRAHPDR 361          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: A0A5N4ABP5_PHOPY (Uncharacterized protein n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A5N4ABP5_PHOPY)

HSP 1 Score: 63.2 bits (152), Expect = 1.200e-6
Identity = 54/191 (28.27%), Postives = 87/191 (45.55%), Query Frame = 1
Query:  412 LDLAAYYEWTDIMEVLIQHGSDVNARGWRNLTALGKAAEGNKVDAIDVLIEAGAVIHGPA--GFDSVLHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLRAVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGA 978
            LDL  +   TD++++L+  G D+N R   +   +  A       A+D LI  GA +H  +    +S LH  V  +     + L+  G D    +   ETPL RA   +H G +  LL+ G S +      + ++ + +       D  IV  L+  G  +NA++ DG+T L  A    N   V + +E GA
Sbjct: 2688 LDLVVHLNDTDVLDMLLAKGMDINYRLSESEPLIIAALREKCRKAVDYLIAKGADLHVVSYETGNSCLHYAVSAEYEDVTNLLLDEGLDINRENNERETPLRRACIDKHAGMIKLLLSRGASLDEGNFRFSYMHYAAELG-----DDAIVTDLIQKGVDLNAINRDGDTPLFLAVLCKNVSTVKLLLEHGA 2873          
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Match: D7G744_ECTSI (Ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G744_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 2.530e-6
Identity = 69/209 (33.01%), Postives = 91/209 (43.54%), Query Frame = 1
Query:  406 AALDLAAYYEWTDIMEVLIQHGSDVNARGWRNLTAL----------GKAAEGNKVDAIDVLIEAGAVIHGPAG-FDSV----LHVGVEVKAIQAIHALVRHGADPE*SDELHETPLLR-AVGMRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAHGARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATV 984
            + L LAA     ++M+ LI+HG+DVNA      TAL            AA G+KV AID LIEAGA I+   G +D      LH+  +  + +A  +LV+H AD            LR A    H+  V  LLAAG + N        L  S  +   S              A V+A  S G TAL   +      V+D  V A A+V
Sbjct:  127 STLGLAARGGHVEVMQALIRHGADVNAPDSNGCTALHTXXXXXXXXXSAAIGDKVGAIDTLIEAGANINVQGGKYDDARSTPLHMASKKGSSEAALSLVKHRADVHRLKGYERYSALRLAACSGHIAIVKTLLAAGANVNLRPAA---LCESALDSARSXXXXXXXXXXXXXXAIVDATDSRGRTALFNVSRENTVAVIDKLVAAWASV 332          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6223.14817.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LTQ8_ECTSI2.850e-5839.27Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JN84_9PHAE1.470e-1830.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNU3_9PHAE6.130e-1328.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JN15_9PHAE4.520e-1227.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6X8_ECTSI5.300e-1228.80Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
D7G137_ECTSI1.210e-848.92Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A6H5JT48_9PHAE1.300e-732.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1U1_ECTSI5.040e-742.53Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]
A0A5N4ABP5_PHOPY1.200e-628.27Uncharacterized protein n=2 Tax=Photinus pyralis T... [more]
D7G744_ECTSI2.530e-633.01Ankyrin repeat protein n=1 Tax=Ectocarpus siliculo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6223contigL-elsbetiae_contig6223:2532..4103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.2
Seed ortholog evalue1.6e-21
Seed eggNOG ortholog2880.D8LTQ8
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionAnkyrin repeat
Ec32 orthologEc-28_003170.1
Exons1
Model size1572
Cds size849
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.8043976-UTR-L-elsbetiae_contig6223:2531..32541622816683.8043976-UTR-L-elsbetiae_contig6223:2531..3254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6223 2532..3254 +
1691683737.9282491-UTR-L-elsbetiae_contig6223:2531..32541691683737.9282491-UTR-L-elsbetiae_contig6223:2531..3254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6223 2532..3254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.819359-CDS-L-elsbetiae_contig6223:3254..41031622816683.819359-CDS-L-elsbetiae_contig6223:3254..4103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6223 3255..4103 +
1691683737.9410768-CDS-L-elsbetiae_contig6223:3254..41031691683737.9410768-CDS-L-elsbetiae_contig6223:3254..4103Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6223 3255..4103 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6223.14817.1prot_L-elsbetiae_contig6223.14817.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6223 3255..4103 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6223.14817.1

>prot_L-elsbetiae_contig6223.14817.1 ID=prot_L-elsbetiae_contig6223.14817.1|Name=mRNA_L-elsbetiae_contig6223.14817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=283bp
MRHLGTVTALLAAGVSPNASGTTDTLLYASVDEDLYSNCDQDIVQTLLAH
GARVNALSSDGNTALHAAAEFANSHVVDIQVEAGATVCTPCMHGRTPLHQ
ASWCQKLDTVTALLRHGAPINAQDIDGNTALHFAAIGREHLEDALELVNC
LLLAGADETAMNDEGKTPASNIPLEPSGHRAGDAIREKVHELLLRAPADR
ADRSWRRRGMVFLCHAFPEKAVRATGSRTTKLPRVAAVGGVAAATVGQDS
IDGDDNFRGMVANLFSLREGKKELFRQIITLL*
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mRNA from alignment at L-elsbetiae_contig6223:2532..4103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6223.14817.1 ID=mRNA_L-elsbetiae_contig6223.14817.1|Name=mRNA_L-elsbetiae_contig6223.14817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1572bp|location=Sequence derived from alignment at L-elsbetiae_contig6223:2532..4103+ (Laminarionema elsbetiae ELsaHSoW15)
GCGATGCTCCTTCCGTCATGGCGCTATTGGCGGCTGGTGCCGACCTCGCC GTTCGATTCCCATTCAACAAGCACAGCAGTATCAGTATGTCGGCCCTCGA CGGTGCCGCCTATTTCGGCCATGTTCGCGTAATGCAACTCTTGATAGAGC GTGGGGCTTTGGAAACCGTCCAAGTAACGCAACACACCCCGCTGCACTTC GCTGCGCAGCAGAACCGAGTGGCTGCAATCCAACTGCTTGTTGGCGAGGG CGCCAGCGTTAGCGGCAAGGACGTCGAGGGGGGTCACCCCGCTTATGCTT GCAACAGTTGAAAATCAGGCACCCGCCGTTGAAGCTCTGTGCGTCTTGGG GGCCAACCTCAGCCTCCGTGTGAAGACACACTTCAAAATCGGGTGGGACA TTTGCGCCGCCCTAGACTTGGCCGCTTACTACGAATGGACGGATATCATG GAAGTGCTGATTCAACACGGGTCGGACGTGAACGCCAGGGGTTGGAGGAA TCTGACAGCTTTGGGCAAGGCTGCCGAGGGAAATAAGGTGGATGCCATCG ACGTCCTCATCGAGGCTGGGGCTGTGATTCATGGGCCGGCTGGTTTTGAT AGCGTTCTACACGTGGGCGTCGAAGTCAAGGCTATCCAGGCTATTCACGC ACTGGTGCGCCACGGGGCTGATCCTGAATGAAGCGACGAGCTCCATGAAA CTCCGCTGCTTCGTGCCGTCGGGATGAGGCACCTAGGCACTGTCACCGCG TTGCTAGCCGCTGGCGTAAGTCCAAATGCTTCGGGGACAACTGATACTTT GCTATACGCCTCGGTGGATGAGGACCTATATAGCAACTGCGATCAAGATA TCGTGCAGACGCTTCTCGCGCACGGCGCACGAGTGAACGCCTTGAGCTCA GACGGAAACACTGCTCTTCACGCGGCGGCTGAGTTCGCCAACAGCCATGT GGTGGATATACAAGTCGAGGCTGGGGCAACCGTATGCACCCCCTGCATGC ACGGGCGCACTCCTCTTCACCAAGCTTCCTGGTGCCAGAAACTGGACACC GTTACTGCATTGCTGAGGCATGGGGCGCCGATCAATGCGCAAGACATCGA CGGCAATACAGCCCTCCACTTCGCTGCGATAGGACGTGAACACCTTGAAG ATGCGCTAGAGCTGGTAAACTGTTTGCTGCTTGCGGGCGCCGACGAAACC GCCATGAATGATGAAGGCAAAACCCCAGCCTCGAACATACCGCTCGAACC TTCAGGTCACCGGGCCGGCGATGCAATTCGCGAGAAGGTTCATGAACTCC TGCTGCGAGCTCCGGCGGACCGAGCGGACAGATCCTGGCGTCGAAGAGGT ATGGTGTTCTTGTGCCATGCCTTCCCAGAAAAGGCGGTGCGAGCGACGGG AAGCCGCACTACTAAGCTGCCGAGGGTAGCAGCAGTGGGTGGTGTAGCTG CTGCCACCGTTGGACAGGATTCCATTGACGGCGATGACAACTTCAGGGGA ATGGTGGCGAACCTCTTCAGCTTGCGTGAGGGGAAGAAAGAGCTTTTCCG GCAGATCATTACCTTGCTGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6223:2532..4103+

>mRNA_L-elsbetiae_contig6223.14817.1 ID=mRNA_L-elsbetiae_contig6223.14817.1|Name=mRNA_L-elsbetiae_contig6223.14817.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1698bp|location=Sequence derived from alignment at L-elsbetiae_contig6223:2532..4103+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGCACCTAGGCACTGTCACCGCGTTGCTAGCCGCTGGCGTAAGTCC
AAATGCTTCGGGGACAACTGATACTTTGCTATACGCCTCGGTGGATGAGG
ACCTATATAGCAACTGCGATCAAGATATCGTGCAGACGCTTCTCGCGCAC
GGCGCACGAGTGAACGCCTTGAGCTCAGACGGAAACACTGCTCTTCACGC
GGCGGCTGAGTTCGCCAACAGCCATGTGGTGGATATACAAGTCGAGGCTG
GGGCAACCGTATGCACCCCCTGCATGCACGGGCGCACTCCTCTTCACCAA
GCTTCCTGGTGCCAGAAACTGGACACCGTTACTGCATTGCTGAGGCATGG
GGCGCCGATCAATGCGCAAGACATCGACGGCAATACAGCCCTCCACTTCG
CTGCGATAGGACGTGAACACCTTGAAGATGCGCTAGAGCTGGTAAACTGT
TTGCTGCTTGCGGGCGCCGACGAAACCGCCATGAATGATGAAGGCAAAAC
CCCAGCCTCGAACATACCGCTCGAACCTTCAGGTCACCGGGCCGGCGATG
CAATTCGCGAGAAGGTTCATGAACTCCTGCTGCGAGCTCCGGCGGACCGA
GCGGACAGATCCTGGCGTCGAAGAGGTATGGTGTTCTTGTGCCATGCCTT
CCCAGAAAAGGCGGTGCGAGCGACGGGAAGCCGCACTACTAAGCTGCCGA
GGGTAGCAGCAGTGGGTGGTGTAGCTGCTGCCACCGTTGGACAGGATTCC
ATTGACGGCGATGACAACTTCAGGGGAATGGTGGCGAACCTCTTCAGCTT
GCGTGAGGGGAAGAAAGAGCTTTTCCGGCAGATCATTACCTTGCTGTAAA
TGAGGCACCTAGGCACTGTCACCGCGTTGCTAGCCGCTGGCGTAAGTCCA
AATGCTTCGGGGACAACTGATACTTTGCTATACGCCTCGGTGGATGAGGA
CCTATATAGCAACTGCGATCAAGATATCGTGCAGACGCTTCTCGCGCACG
GCGCACGAGTGAACGCCTTGAGCTCAGACGGAAACACTGCTCTTCACGCG
GCGGCTGAGTTCGCCAACAGCCATGTGGTGGATATACAAGTCGAGGCTGG
GGCAACCGTATGCACCCCCTGCATGCACGGGCGCACTCCTCTTCACCAAG
CTTCCTGGTGCCAGAAACTGGACACCGTTACTGCATTGCTGAGGCATGGG
GCGCCGATCAATGCGCAAGACATCGACGGCAATACAGCCCTCCACTTCGC
TGCGATAGGACGTGAACACCTTGAAGATGCGCTAGAGCTGGTAAACTGTT
TGCTGCTTGCGGGCGCCGACGAAACCGCCATGAATGATGAAGGCAAAACC
CCAGCCTCGAACATACCGCTCGAACCTTCAGGTCACCGGGCCGGCGATGC
AATTCGCGAGAAGGTTCATGAACTCCTGCTGCGAGCTCCGGCGGACCGAG
CGGACAGATCCTGGCGTCGAAGAGGTATGGTGTTCTTGTGCCATGCCTTC
CCAGAAAAGGCGGTGCGAGCGACGGGAAGCCGCACTACTAAGCTGCCGAG
GGTAGCAGCAGTGGGTGGTGTAGCTGCTGCCACCGTTGGACAGGATTCCA
TTGACGGCGATGACAACTTCAGGGGAATGGTGGCGAACCTCTTCAGCTTG
CGTGAGGGGAAGAAAGAGCTTTTCCGGCAGATCATTACCTTGCTGTAA
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