mRNA_L-elsbetiae_contig6220.14814.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6220.14814.1
Unique NamemRNA_L-elsbetiae_contig6220.14814.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6220.14814.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 1.430e-24
Identity = 58/98 (59.18%), Postives = 70/98 (71.43%), Query Frame = 3 
Query:   42 DRILDGVDDMISCVLEFVEDTQFLFVAGLSTRWKGGWENQRRPKTTRAITEHTTPSQLACSFKCGLRRRAEVCEAVAALGRLDLLKCARENYCRWGRS 335
            D  LD   D++ C+ +FV D Q LF AG+ST W+  W   RRP +TRAITEH TPSQL  SF CGLR+RAEVCEA+A  G+L++LK ARE  C WGRS
Sbjct:   30 DNPLDANVDIVRCLADFVHDEQHLFFAGVSTLWREAWG--RRPTSTRAITEHVTPSQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRARELKCPWGRS 125
[Close]
BLAST of mRNA_L-elsbetiae_contig6220.14814.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.130e-18
Identity = 46/90 (51.11%), Postives = 61/90 (67.78%), Query Frame = 3 
Query:   66 DMISCVLEFVEDTQFLFVAGLSTRWKGGWENQRRPKTTRAITEHTTPSQLACSFKCGLRRRAEVCEAVAALGRLDLLKCARENYCRWGRS 335
            D++S V EFV+D Q+LF A +S  W+  W   +RP  T+A+T  T+  QL+ SF+CGLRR A VCE VA LGRLDLL+ AR   C+W  +
Sbjct:    8 DIVSTVAEFVDDNQYLFFASVSRGWRDVWG--KRPTVTKALTADTSVPQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCQWNEN 95
[Close]
BLAST of mRNA_L-elsbetiae_contig6220.14814.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI)

HSP 1 Score: 93.6 bits (231), Expect = 6.290e-17
Identity = 47/90 (52.22%), Postives = 61/90 (67.78%), Query Frame = 3 
Query:   66 DMISCVLEFVEDTQFLFVAGLSTRWKGGWENQRRPKTTRAITEHTTPSQLACSFKCGLRRRAEVCEAVAALGRLDLLKCARENYCRWGRS 335
            D++S V EFV+D Q+LF A +S  W+  W   +RP  T+A+T  T+ SQL+ SF+CGLRR A VCE VA LGRLDLL+ AR   C W  +
Sbjct:   10 DIVSTVGEFVDDNQYLFFASVSRGWRDVWG--KRPTVTKALTADTSVSQLSLSFECGLRRTAAVCETVAGLGRLDLLRRARAMGCPWNEN 97
[Close]
BLAST of mRNA_L-elsbetiae_contig6220.14814.1 vs. uniprot
Match: D7G8W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8W5_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 5.360e-16
Identity = 46/82 (56.10%), Postives = 56/82 (68.29%), Query Frame = 3 
Query:   84 LEFVEDTQFLFVAGLSTRWKGGWENQRRPKTTRAITEHTTPSQLACSFKCGLRRRAEVCEAVAALGRLDLLKCARENY-CRW 326
            +EFV   Q+LF AG+S  W+  WE   RP TTRA+T  T   QL+ SF+CGL RR+ VC+ +AALGRLDLL  ARE Y C W
Sbjct:    1 MEFVGGEQYLFFAGVSRTWRDAWEG--RPTTTRAVTADTGVPQLSQSFECGLARRSTVCQDIAALGRLDLLVSAREEYECPW 80
[Close]
BLAST of mRNA_L-elsbetiae_contig6220.14814.1 vs. uniprot
Match: A0A6H5JCI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI6_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.930e-5
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = -1 
Query: 1610 SRTEAIPKNATFVFVFPPIIGIFLVCPTGPHTPLRLARRPNRDHTGGSGWTPLLRCRPAITCLPTWQGQQ 1819
            S T A+     F F F       +VCP+GP+ PL  ARRPNRDH GG GWTP          LP+W G++
Sbjct:  159 SVTLALASGCFFFFFFCLSSLDSVVCPSGPYPPLLPARRPNRDHIGGGGWTPSCGSVCWRGNLPSWPGER 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6220.14814.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LFW3_ECTSI1.430e-2459.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L0J7_9PHAE5.130e-1851.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS7_ECTSI6.290e-1752.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8W5_ECTSI5.360e-1656.10Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCI6_9PHAE1.930e-544.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6220contigL-elsbetiae_contig6220:2627..4862 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog2880.D7FJY0
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
EggNOG OGs2AMK4@1,2RZCC@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Exons1
Model size2236
Cds size1200
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6220.14814.1prot_L-elsbetiae_contig6220.14814.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6220 2695..3894 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.499403-UTR-L-elsbetiae_contig6220:2626..26941622816683.499403-UTR-L-elsbetiae_contig6220:2626..2694Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6220 2627..2694 +
1691683737.6993902-UTR-L-elsbetiae_contig6220:2626..26941691683737.6993902-UTR-L-elsbetiae_contig6220:2626..2694Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6220 2627..2694 +
1622816683.526084-UTR-L-elsbetiae_contig6220:3894..48621622816683.526084-UTR-L-elsbetiae_contig6220:3894..4862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6220 3895..4862 +
1691683737.7338119-UTR-L-elsbetiae_contig6220:3894..48621691683737.7338119-UTR-L-elsbetiae_contig6220:3894..4862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6220 3895..4862 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816683.5144362-CDS-L-elsbetiae_contig6220:2694..38941622816683.5144362-CDS-L-elsbetiae_contig6220:2694..3894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6220 2695..3894 +
1691683737.7162068-CDS-L-elsbetiae_contig6220:2694..38941691683737.7162068-CDS-L-elsbetiae_contig6220:2694..3894Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6220 2695..3894 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6220.14814.1

>prot_L-elsbetiae_contig6220.14814.1 ID=prot_L-elsbetiae_contig6220.14814.1|Name=mRNA_L-elsbetiae_contig6220.14814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=400bp
MISCVLEFVEDTQFLFVAGLSTRWKGGWENQRRPKTTRAITEHTTPSQLA
CSFKCGLRRRAEVCEAVAALGRLDLLKCARENYCRWGRSTCIAAADQGHL
GVLQYARRNGCAWGEMVCAAAAKRGFLHILQWARQNNCYWNGWTPQYAAE
EGHLDVLQWCAENKCMKGNHPCKAAAGAGRLEVLRWLRENGFPWDHMTMR
AAAEGGHSEVLYYCLENDAPWDASTCRAAARGGHLGVLRWLRSKGAPWDD
SVCRDAARWGHGDVLEWARANGCPWGEYTSREAARGGHLGLLRWCREAGL
PVGVRTSCAAAWGGHLEVLQWLREVGCPWDEMTCSCAAGGGHMDVLRWAR
ENGCPWDSRTIECAKKRKHPDIAKWAAELGCPSPPPTPAPTPAATPTPP*
back to top

mRNA from alignment at L-elsbetiae_contig6220:2627..4862+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6220.14814.1 ID=mRNA_L-elsbetiae_contig6220.14814.1|Name=mRNA_L-elsbetiae_contig6220.14814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2236bp|location=Sequence derived from alignment at L-elsbetiae_contig6220:2627..4862+ (Laminarionema elsbetiae ELsaHSoW15)
AGGATGCAAGCGACGCGTACGGCGGGAAGTCGTTCAAGTCGGACCGCATA
CTAGATGGCGTTGACGACATGATCTCATGCGTGCTGGAGTTCGTGGAGGA
CACGCAGTTTCTCTTCGTCGCGGGCTTGTCGACGCGCTGGAAAGGGGGCT
GGGAGAATCAGCGGCGGCCGAAGACCACCCGGGCGATCACGGAGCACACG
ACGCCGTCCCAGCTGGCGTGCAGCTTCAAGTGCGGCCTGCGCCGGCGCGC
CGAGGTCTGCGAGGCGGTGGCGGCCCTCGGGAGGCTGGACCTCCTCAAGT
GCGCCCGGGAGAACTACTGCCGGTGGGGGCGGAGCACGTGCATCGCCGCC
GCCGACCAGGGCCACCTGGGCGTCCTCCAGTACGCCCGGAGGAACGGCTG
CGCCTGGGGCGAGATGGTCTGCGCCGCCGCCGCCAAGCGCGGGTTCCTCC
ACATCCTCCAGTGGGCCCGCCAGAACAACTGCTACTGGAACGGCTGGACC
CCGCAGTACGCCGCCGAGGAGGGACACCTGGACGTGCTCCAGTGGTGCGC
CGAGAACAAGTGCATGAAGGGCAACCACCCCTGCAAGGCGGCCGCCGGGG
CCGGGCGTCTCGAGGTGCTCCGGTGGCTCCGCGAGAACGGGTTCCCCTGG
GACCACATGACGATGCGCGCGGCGGCGGAGGGCGGCCACTCAGAGGTCCT
GTATTACTGCCTTGAGAACGACGCCCCCTGGGACGCGTCCACGTGCCGAG
CCGCCGCCCGCGGCGGGCACCTCGGGGTGCTCCGGTGGCTGCGCTCGAAG
GGCGCGCCTTGGGACGACTCCGTGTGCCGCGACGCCGCCAGGTGGGGCCA
CGGGGACGTGCTGGAGTGGGCGAGGGCCAACGGCTGCCCCTGGGGCGAGT
ACACCAGCCGAGAGGCCGCCCGTGGGGGACACCTCGGGCTCCTCCGGTGG
TGCCGCGAGGCGGGGCTGCCGGTCGGCGTGCGCACCAGCTGCGCCGCCGC
CTGGGGGGGACACCTCGAGGTGCTGCAGTGGCTTCGAGAGGTCGGGTGCC
CGTGGGACGAGATGACCTGCAGCTGCGCCGCCGGCGGGGGCCACATGGAC
GTGCTGCGCTGGGCCCGCGAGAACGGCTGTCCCTGGGACTCGCGCACCAT
CGAATGCGCCAAAAAACGGAAGCACCCCGACATCGCGAAGTGGGCGGCAG
AACTCGGATGCCCATCCCCACCCCCAACCCCTGCCCCAACCCCAGCTGCA
ACCCCAACCCCACCCTGATGTCCTGTCCTTTCCTTGCGCTTGCTTCTCCC
AGCAAAGCAAAATAAGAAGGATGTGCGGCGTTACTAAAACAAGTCTTTGG
GGAAACCACCCAAGTAGCAAATCGCGCCGGGTTATTTGAGAAGATGGCTA
TATTCTTGAGTCGGTATCCGTATTTAAGAAAAAAAAAAAAAAGAGAGAAG
GAAGGTGATGGGGGTGCATGCATTTTTAGGACGGTTAGCACAAGTTTGAT
CTGTCATCTGCGCGTGCTTTTGTGTTTGCTGCTGCGTTTTTGGGTTTGGG
CCTTACTAGCAGAGATGAGAGGTTAGATATGTCGCGGGAAATTAATTTGA
CATGCTCGGCTGCTGTCCTTGCCAAGTTGGAAGACAAGTGATGGCAGGTC
GGCACCGCAGGAGTGGGGTCCACCCGCTCCCTCCTGTGTGATCCCGGTTG
GGTCGTCTAGCTAGTCGTAGTGGAGTATGGGGGCCAGTGGGGCAGACGAG
GAATATGCCAATGATTGGAGGGAAAACAAAAACAAAAGTCGCGTTTTTTG
GGATGGCCTCTGTCCTGCTCGCTTGAAGGGGCCAGATGGCCAGGGAGGAT
TTTGCCTAATCTCTTTTTTTATAGCGTGGTGTCCGGTGCTGTGTCGTTCG
GCCCGTACTTTAGACTTACAAAGCATGCGCATTGTTTGGTTGTGATTGTT
TTATACCATAGATATTTTTGCTTTTGGCATCAACCGCGCTAACCCGCCGT
TGATGTTTGCGGTAAGTTGCGTGCGCGTGCGTGTCTGCATATCTGCTTTC
GACCGCGATTTCCAGCTCAACAGAGAACCTGTCACACAGCCGCCGACCCC
GCAACACAGACGATCGGAATCCCCTCGAAAAGGTGGCGGGGGTCGCTGTG
GGTGCGAGTAGGGTTGTTTGGCTGCAAGTACGTGTGTGTGTGTGTGTGTA
GATTTCAGTGGCTGCGTTTCTTTTCTTTCGTGTGCA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6220:2627..4862+

>mRNA_L-elsbetiae_contig6220.14814.1 ID=mRNA_L-elsbetiae_contig6220.14814.1|Name=mRNA_L-elsbetiae_contig6220.14814.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2400bp|location=Sequence derived from alignment at L-elsbetiae_contig6220:2627..4862+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCTCATGCGTGCTGGAGTTCGTGGAGGACACGCAGTTTCTCTTCGT
CGCGGGCTTGTCGACGCGCTGGAAAGGGGGCTGGGAGAATCAGCGGCGGC
CGAAGACCACCCGGGCGATCACGGAGCACACGACGCCGTCCCAGCTGGCG
TGCAGCTTCAAGTGCGGCCTGCGCCGGCGCGCCGAGGTCTGCGAGGCGGT
GGCGGCCCTCGGGAGGCTGGACCTCCTCAAGTGCGCCCGGGAGAACTACT
GCCGGTGGGGGCGGAGCACGTGCATCGCCGCCGCCGACCAGGGCCACCTG
GGCGTCCTCCAGTACGCCCGGAGGAACGGCTGCGCCTGGGGCGAGATGGT
CTGCGCCGCCGCCGCCAAGCGCGGGTTCCTCCACATCCTCCAGTGGGCCC
GCCAGAACAACTGCTACTGGAACGGCTGGACCCCGCAGTACGCCGCCGAG
GAGGGACACCTGGACGTGCTCCAGTGGTGCGCCGAGAACAAGTGCATGAA
GGGCAACCACCCCTGCAAGGCGGCCGCCGGGGCCGGGCGTCTCGAGGTGC
TCCGGTGGCTCCGCGAGAACGGGTTCCCCTGGGACCACATGACGATGCGC
GCGGCGGCGGAGGGCGGCCACTCAGAGGTCCTGTATTACTGCCTTGAGAA
CGACGCCCCCTGGGACGCGTCCACGTGCCGAGCCGCCGCCCGCGGCGGGC
ACCTCGGGGTGCTCCGGTGGCTGCGCTCGAAGGGCGCGCCTTGGGACGAC
TCCGTGTGCCGCGACGCCGCCAGGTGGGGCCACGGGGACGTGCTGGAGTG
GGCGAGGGCCAACGGCTGCCCCTGGGGCGAGTACACCAGCCGAGAGGCCG
CCCGTGGGGGACACCTCGGGCTCCTCCGGTGGTGCCGCGAGGCGGGGCTG
CCGGTCGGCGTGCGCACCAGCTGCGCCGCCGCCTGGGGGGGACACCTCGA
GGTGCTGCAGTGGCTTCGAGAGGTCGGGTGCCCGTGGGACGAGATGACCT
GCAGCTGCGCCGCCGGCGGGGGCCACATGGACGTGCTGCGCTGGGCCCGC
GAGAACGGCTGTCCCTGGGACTCGCGCACCATCGAATGCGCCAAAAAACG
GAAGCACCCCGACATCGCGAAGTGGGCGGCAGAACTCGGATGCCCATCCC
CACCCCCAACCCCTGCCCCAACCCCAGCTGCAACCCCAACCCCACCCTGA
ATGATCTCATGCGTGCTGGAGTTCGTGGAGGACACGCAGTTTCTCTTCGT
CGCGGGCTTGTCGACGCGCTGGAAAGGGGGCTGGGAGAATCAGCGGCGGC
CGAAGACCACCCGGGCGATCACGGAGCACACGACGCCGTCCCAGCTGGCG
TGCAGCTTCAAGTGCGGCCTGCGCCGGCGCGCCGAGGTCTGCGAGGCGGT
GGCGGCCCTCGGGAGGCTGGACCTCCTCAAGTGCGCCCGGGAGAACTACT
GCCGGTGGGGGCGGAGCACGTGCATCGCCGCCGCCGACCAGGGCCACCTG
GGCGTCCTCCAGTACGCCCGGAGGAACGGCTGCGCCTGGGGCGAGATGGT
CTGCGCCGCCGCCGCCAAGCGCGGGTTCCTCCACATCCTCCAGTGGGCCC
GCCAGAACAACTGCTACTGGAACGGCTGGACCCCGCAGTACGCCGCCGAG
GAGGGACACCTGGACGTGCTCCAGTGGTGCGCCGAGAACAAGTGCATGAA
GGGCAACCACCCCTGCAAGGCGGCCGCCGGGGCCGGGCGTCTCGAGGTGC
TCCGGTGGCTCCGCGAGAACGGGTTCCCCTGGGACCACATGACGATGCGC
GCGGCGGCGGAGGGCGGCCACTCAGAGGTCCTGTATTACTGCCTTGAGAA
CGACGCCCCCTGGGACGCGTCCACGTGCCGAGCCGCCGCCCGCGGCGGGC
ACCTCGGGGTGCTCCGGTGGCTGCGCTCGAAGGGCGCGCCTTGGGACGAC
TCCGTGTGCCGCGACGCCGCCAGGTGGGGCCACGGGGACGTGCTGGAGTG
GGCGAGGGCCAACGGCTGCCCCTGGGGCGAGTACACCAGCCGAGAGGCCG
CCCGTGGGGGACACCTCGGGCTCCTCCGGTGGTGCCGCGAGGCGGGGCTG
CCGGTCGGCGTGCGCACCAGCTGCGCCGCCGCCTGGGGGGGACACCTCGA
GGTGCTGCAGTGGCTTCGAGAGGTCGGGTGCCCGTGGGACGAGATGACCT
GCAGCTGCGCCGCCGGCGGGGGCCACATGGACGTGCTGCGCTGGGCCCGC
GAGAACGGCTGTCCCTGGGACTCGCGCACCATCGAATGCGCCAAAAAACG
GAAGCACCCCGACATCGCGAAGTGGGCGGCAGAACTCGGATGCCCATCCC
CACCCCCAACCCCTGCCCCAACCCCAGCTGCAACCCCAACCCCACCCTGA
back to top