mRNA_L-elsbetiae_contig6213.14806.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6213.14806.1
Unique NamemRNA_L-elsbetiae_contig6213.14806.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6213.14806.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6213contigL-elsbetiae_contig6213:7469..7774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size306
Cds size306
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816682.7269762-CDS-L-elsbetiae_contig6213:7468..77741622816682.7269762-CDS-L-elsbetiae_contig6213:7468..7774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6213 7469..7774 +
1691683737.0681732-CDS-L-elsbetiae_contig6213:7468..77741691683737.0681732-CDS-L-elsbetiae_contig6213:7468..7774Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6213 7469..7774 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6213.14806.1prot_L-elsbetiae_contig6213.14806.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6213 7469..7774 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6213.14806.1

>prot_L-elsbetiae_contig6213.14806.1 ID=prot_L-elsbetiae_contig6213.14806.1|Name=mRNA_L-elsbetiae_contig6213.14806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
MPCPLRNTPSRVTAAPNTAFYVPRQQTRLPDREIRRRDLDGPRQCITTLR
YIYLRRHMHASTKNCVRTSTERKLYLPPAHYYPDPRLCTPRDPDLIDMHK
A*
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mRNA from alignment at L-elsbetiae_contig6213:7469..7774+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6213.14806.1 ID=mRNA_L-elsbetiae_contig6213.14806.1|Name=mRNA_L-elsbetiae_contig6213.14806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=306bp|location=Sequence derived from alignment at L-elsbetiae_contig6213:7469..7774+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTGCCCGCTTCGGAATACACCCTCACGCGTAACTGCAGCTCCAAA
TACGGCGTTCTACGTACCCCGACAGCAAACACGCCTCCCCGATCGGGAGA
TCCGTCGCAGGGACCTCGACGGACCACGACAATGTATCACGACGCTGCGC
TACATATACCTTCGACGCCACATGCATGCCTCAACCAAAAATTGCGTGCG
CACATCCACCGAACGCAAGCTATATCTACCGCCAGCCCACTACTACCCAG
ATCCGCGTCTTTGCACGCCTCGAGACCCTGACTTGATAGATATGCACAAG
GCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6213:7469..7774+

>mRNA_L-elsbetiae_contig6213.14806.1 ID=mRNA_L-elsbetiae_contig6213.14806.1|Name=mRNA_L-elsbetiae_contig6213.14806.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6213:7469..7774+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTTGCCCGCTTCGGAATACACCCTCACGCGTAACTGCAGCTCCAAA
TACGGCGTTCTACGTACCCCGACAGCAAACACGCCTCCCCGATCGGGAGA
TCCGTCGCAGGGACCTCGACGGACCACGACAATGTATCACGACGCTGCGC
TACATATACCTTCGACGCCACATGCATGCCTCAACCAAAAATTGCGTGCG
CACATCCACCGAACGCAAGCTATATCTACCGCCAGCCCACTACTACCCAG
ATCCGCGTCTTTGCACGCCTCGAGACCCTGACTTGATAGATATGCACAAG
GCCTAAATGCCTTGCCCGCTTCGGAATACACCCTCACGCGTAACTGCAGC
TCCAAATACGGCGTTCTACGTACCCCGACAGCAAACACGCCTCCCCGATC
GGGAGATCCGTCGCAGGGACCTCGACGGACCACGACAATGTATCACGACG
CTGCGCTACATATACCTTCGACGCCACATGCATGCCTCAACCAAAAATTG
CGTGCGCACATCCACCGAACGCAAGCTATATCTACCGCCAGCCCACTACT
ACCCAGATCCGCGTCTTTGCACGCCTCGAGACCCTGACTTGATAGATATG
CACAAGGCCTAA
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