mRNA_L-elsbetiae_contig621.14800.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig621.14800.1
Unique NamemRNA_L-elsbetiae_contig621.14800.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig621.14800.1 vs. uniprot
Match: A0A6H5JUI7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUI7_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.160e-52
Identity = 95/115 (82.61%), Postives = 102/115 (88.70%), Query Frame = 1 
Query:    1 MKTAFAVLALVAGASAFNVAVPAGRVSAARSSSTAVSAGGYVPDGLTAKQWEDMKKKKEVAAAKXXXEVAGKKFEDIDTFMKGMEAGKRGHTFAKVDESLEKLMPAGARGVKQDK 345
            MKTAFAV+AL AGASAFNVAVPA RV++ R+SSTAVSAG YVPDGLTA+QWEDMKK+K   AA    EVA KKFEDIDTFMKGMEAGKRGHTFAKVDESLEKL PAGARGVKQ+K
Sbjct:    1 MKTAFAVVALFAGASAFNVAVPASRVTSTRASSTAVSAG-YVPDGLTAQQWEDMKKEKAAKAAARKKEVASKKFEDIDTFMKGMEAGKRGHTFAKVDESLEKLPPAGARGVKQNK 114
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig621.14800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUI7_9PHAE1.160e-5282.61Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig621contigL-elsbetiae_contig621:20860..22739 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_003340.1
Exons3
Model size351
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig621.14800.1prot_L-elsbetiae_contig621.14800.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig621 20860..22739 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.9665692-CDS-L-elsbetiae_contig621:20859..209851622816681.9665692-CDS-L-elsbetiae_contig621:20859..20985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig621 20860..20985 -
1691683736.4120748-CDS-L-elsbetiae_contig621:20859..209851691683736.4120748-CDS-L-elsbetiae_contig621:20859..20985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig621 20860..20985 -
1622816681.9810874-CDS-L-elsbetiae_contig621:22106..222761622816681.9810874-CDS-L-elsbetiae_contig621:22106..22276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig621 22107..22276 -
1691683736.4350588-CDS-L-elsbetiae_contig621:22106..222761691683736.4350588-CDS-L-elsbetiae_contig621:22106..22276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig621 22107..22276 -
1622816681.9950802-CDS-L-elsbetiae_contig621:22684..227391622816681.9950802-CDS-L-elsbetiae_contig621:22684..22739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig621 22685..22739 -
1691683736.4472468-CDS-L-elsbetiae_contig621:22684..227391691683736.4472468-CDS-L-elsbetiae_contig621:22684..22739Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig621 22685..22739 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig621.14800.1

>prot_L-elsbetiae_contig621.14800.1 ID=prot_L-elsbetiae_contig621.14800.1|Name=mRNA_L-elsbetiae_contig621.14800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=117bp
MKTAFAVLALVAGASAFNVAVPAGRVSAARSSSTAVSAGGYVPDGLTAKQ
WEDMKKKKEVAAAKRKKEVAGKKFEDIDTFMKGMEAGKRGHTFAKVDESL
EKLMPAGARGVKQDKK*
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mRNA from alignment at L-elsbetiae_contig621:20860..22739-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig621.14800.1 ID=mRNA_L-elsbetiae_contig621.14800.1|Name=mRNA_L-elsbetiae_contig621.14800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1880bp|location=Sequence derived from alignment at L-elsbetiae_contig621:20860..22739- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGACCGCGTTCGCTGTGTTGGCCCTTGTGGCGGGTGCTAGCGCTTT
CAACGGTGAGAGTGCACAGACGTCTCGCATGTCTCGCATGCGTGTGTGTT
GAAGATGTCGGTTTCTGGATCGTACAAGCAACAGAGTCGACACGGCTGGT
TTGGTTCGTGTTTGGCTGGATGGGGCGAGAAGCCCATGACTACCGGGGCC
AGCAGCTGCTGTCTTCGGCAGTGCAAGGTGTCTGCTGCACGTGGTGTCGT
GTTTTTCATTCGTGTTTTTTATTCGGATTGAAAAACACGTGCTTTCCTTG
AATAATATTTCCCCTCTATGTCTTGGACGCTGCTGACTCACTCATGCGGA
CCCGCGTGCTTCCTACAGAGCTTCGTCTCTACCGTGATGCATGGGTTGAA
ACATTTATATTGGTCGCCTGTGCTTCTGTCCGCCCACCGTGTCTGAAATG
GTCCCTCTTGCAGTCGCTGTCCCCGCTGGACGCGTGAGCGCCGCGCGCTC
ATCGTCGACCGCTGTCTCAGCCGGCGGCTACGTTCCGGATGGGCTCACCG
CAAAGCAGTGGGAGGACATGAAGAAGAAGAAGGAGGTGGCTGCGGCGAAG
AGGAAGAAGGAAGTGGCGGGGAAGAAGTTTGAGGTGGGTTTGGATGATTG
TATGTGGTACAAAATGAGGTTAGTTCGGGAGTTTTTTTGGTAACAACTCA
TCTTTGGTGGATTGAAGTGTATCAACGCTTGACCTCCGGGGGCGTATCTC
AGTCCGACCGTACACGGTCTCAACCGTTGATGCGCGTCGCGTGTCTCACT
TCCCGCGGTGTTCCGTTTCTAGTGGGTTTTACTTCATCCTGAAAGTCATA
ACGGGCAACATTTGTAAGAACCAGGCTGACATGTACACCTACTAGCCGCT
GAGACACAGTGCGTCCTCATTCAAACGCACAAGTGACCGAATGGCCTACC
CACGTCGCTAAATTATACAGAAACTAGTGTGTGCGTGAAGTGACCCCCCC
GGCTTGTACGAAAGAAACTAGTGTGTGCATTTATCCTGGTATGAGTGTCT
CGCCCGAAGATGCAAGTGTCGTAAGTTGTGTCGACACACACACAACACAT
GTCGTATGTACTCCGACATCGCGTGTTGAGTTGCCGTAATTTTTGGCCTC
TGCTTTCGCGAAACCCTCAAATGTACTACTATACTTGTGGGATTTCAACT
GACACAAATGTCTTTCAAATTGGAATGCAGCCTTTCTTTGGTCATGATAC
ATCCATATGCTAATACCGGTTGTTGATACCCTCAAATTTCAGTACGTGGA
CACTAGATGCGAACAATAAATTGGCGGCAGGGCAAGAGTTTTCAGTCTGA
GAAATATTCTCCATCTGTGTTCGCCAATCTCGCTGCGTTTTTTTTTTTTT
GTCTGCCCATGATTGAACTTTGTCGTCTGCCCCTCTGGCCCCCATCCCCC
ACATCTACTCTAGCCATACGACCCAACCGGGGTCACATGCGTATACTCAC
ACGCGAACACACAAACAAAAAAGGGGCACATGATAATCATGAAGCTGGGT
TCCGCAACCAGAGAAAACCAAATCCTCCCTCCACGAAACGGCCTTGAGGT
ATCCTCGGTATTCTGTGTGAGGTTGATCAGACGTATCAGGGAGTAGTTCT
GTCTTGAAATAATCGAACCCGGCTCTCTCCTGCTGAACTCAGGCGAACTC
TTATTGTGTCAACGTATTTTTTGGCGTTCGTATTCCGCGTTTCCGCTTCC
CCAGGACATCGACACTTTCATGAAGGGAATGGAGGCCGGAAAGAGGGGAC
ACACTTTCGCGAAGGTTGACGAGTCGTTGGAGAAGCTCATGCCTGCCGGA
GCGCGCGGCGTCAAGCAGGACAAGAAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig621:20860..22739-

>mRNA_L-elsbetiae_contig621.14800.1 ID=mRNA_L-elsbetiae_contig621.14800.1|Name=mRNA_L-elsbetiae_contig621.14800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=702bp|location=Sequence derived from alignment at L-elsbetiae_contig621:20860..22739- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGACCGCGTTCGCTGTGTTGGCCCTTGTGGCGGGTGCTAGCGCTTT
CAACGATGAAGACCGCGTTCGCTGTGTTGGCCCTTGTGGCGGGTGCTAGC
GCTTTCAACGTCGCTGTCCCCGCTGGACGCGTGAGCGCCGCGCGCTCATC
GTCGACCGCTGTCTCAGCCGGCGGCTACGTTCCGGATGGGCTCACCGCAA
AGCAGTGGGAGGACATGAAGAAGAAGAAGGAGGTGGCTGCGGCGAAGAGG
AAGAAGGAAGTGGCGGGGAAGAAGTTTGAGTCGCTGTCCCCGCTGGACGC
GTGAGCGCCGCGCGCTCATCGTCGACCGCTGTCTCAGCCGGCGGCTACGT
TCCGGATGGGCTCACCGCAAAGCAGTGGGAGGACATGAAGAAGAAGAAGG
AGGTGGCTGCGGCGAAGAGGAAGAAGGAAGTGGCGGGGAAGAAGTTTGAG
GACATCGACACTTTCATGAAGGGAATGGAGGCCGGAAAGAGGGGACACAC
TTTCGCGAAGGTTGACGAGTCGTTGGAGAAGCTCATGCCTGCCGGAGCGC
GCGGCGTCAAGCAGGACAAGAAGTAGGACATCGACACTTTCATGAAGGGA
ATGGAGGCCGGAAAGAGGGGACACACTTTCGCGAAGGTTGACGAGTCGTT
GGAGAAGCTCATGCCTGCCGGAGCGCGCGGCGTCAAGCAGGACAAGAAGT
AG
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