mRNA_L-elsbetiae_contig6209.14797.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6209.14797.1
Unique NamemRNA_L-elsbetiae_contig6209.14797.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: A0A835YY77_9STRA (Cytochrome c biogenesis protein, thiol reduction transmembrane region, CcdA n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY77_9STRA)

HSP 1 Score: 282 bits (721), Expect = 3.990e-90
Identity = 161/234 (68.80%), Postives = 180/234 (76.92%), Query Frame = 3
Query:   36 MYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLNWITPASGALLISYGTYNGLSAIFGSA 737
            MYGTGLLMS SPCALSLLPLTI YI G+E EG         E GG  +    F+PSAAFA GLATVLS+LGLSATYAGK+ GS+   GG+ G   LPL++S  A+A GLN+LEL+   LPS+E G+E   SLP+  RAY LGASSALVASPCCTPVLASILGF+ASSQDPALGL LLL YS GYTTPLMAAGTASG LSR+M+A GL WITP S A LISYGT+ GL AIF SA
Sbjct:    1 MYGTGLLMSFSPCALSLLPLTIGYIIGTEKEG---------EEGGSSNA---FLPSAAFAGGLATVLSVLGLSATYAGKLFGSTG-LGGDTGGLALPLVSSVIAIAAGLNLLELLNFTLPSWEAGVESFNSLPRVGRAYALGASSALVASPCCTPVLASILGFVASSQDPALGLALLLAYSLGYTTPLMAAGTASGALSRIMSASGLTWITPVSAAALISYGTFTGLGAIFDSA 221          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: A0A4D9CLR8_9STRA (DsbD domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CLR8_9STRA)

HSP 1 Score: 211 bits (537), Expect = 2.550e-60
Identity = 126/244 (51.64%), Postives = 169/244 (69.26%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKG--LNWITPASGALLISYGTYNGLSAIF 728
            LTH++PV+  V+YG GLL SLSPCALSL+PLT++Y+     + A ++ T                 +A F  GLAT LS+LGLSAT AGK+ GS+    G LG+  LPL ASA A+ MGLN+L+LV L LPSF+  L+ +   P + +A+LLGA+SAL+ASPC TPVLASILGF+A+S +P LG  LL +YS GY+TPL+ AG  SG ++  +  +G   +W+TPA+GALLISYGTY+ L+ +F
Sbjct:  166 LTHLTPVSGAVLYGAGLLTSLSPCALSLVPLTMAYLTDDGTDPARDQRTL-------------LFRAATFTVGLATSLSVLGLSATLAGKLFGSAGA--GALGAA-LPLTASAVAIVMGLNLLDLVSLRLPSFDAALQ-LERFPPSLQAFLLGATSALIASPCSTPVLASILGFVAASGEPYLGAGLLFSYSLGYSTPLLLAGLLSGTVTSFIAKRGDGFSWVTPATGALLISYGTYSSLATLF 392          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: A0A0G4H6S3_VITBC (DsbD domain-containing protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4H6S3_VITBC)

HSP 1 Score: 188 bits (477), Expect = 1.180e-52
Identity = 116/249 (46.59%), Postives = 165/249 (66.27%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGST--VLPLLASAFAVAMGLNVLELVKLDLPSFEGG-LEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTA----KGLNWITPASGALLISYGTYNGLSAIF 728
            L+H++PV++ V+Y +GL+ SLSPCALSLLPLTI+Y+AG ++    ++ +    +    SL         FAAGLAT LS LGL A+  G  +     FG   G    ++P+ AS  AV MGLNVL LV +  P+F+GG L+    LPK  + +L G +SAL+A+PC TPVL ++LG++AS+ DP LG  LL  Y+ GY +P++AAGTASG L++L+T     +GL WITP +G LL+ YGT++ L+A+F
Sbjct:   61 LSHLTPVSLAVLYLSGLVTSLSPCALSLLPLTIAYLAG-DSSTPTDDPSRPPPIPLSSSLM--------FAAGLATALSSLGLGASLLGMGL-----FGQTSGPAERIVPVAASVLAVVMGLNVLNLVSISFPAFDGGELDEGRKLPKALQDFLFGVTSALIATPCSTPVLTALLGYVASTGDPLLGAALLFAYTLGYASPVVAAGTASGRLAQLLTQGEGREGLRWITPVTGGLLVGYGTFSTLNALF 295          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: B4VM33_9CYAN (Cytochrome C biogenesis protein transmembrane region n=1 Tax=Coleofasciculus chthonoplastes PCC 7420 TaxID=118168 RepID=B4VM33_9CYAN)

HSP 1 Score: 181 bits (459), Expect = 1.250e-50
Identity = 114/245 (46.53%), Postives = 161/245 (65.71%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMT-SLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLSAIFG 731
            LTH+S ++IG+++  GLL SL+PC LS+LP+TI YI G EA+G  + AT+                S  FA GLAT L+ LG+ A   G+V G       ++G   LP++ S  A+ MGLN+LE + L LPSF GG+E+++  LPK  R+YL+G +  LVASPC TPVLA++L ++AS+QD  LG VLLL+Y+AGY TPL+ AGT +  + +L+  +  + WITP SGALL+ +G ++ LS I G
Sbjct:   24 LTHLSALSIGIIFAAGLLTSLTPCMLSMLPITIGYIGGYEAKGRLQAATQ----------------STWFALGLATTLAGLGILAASVGRVYG-------QVGIG-LPIIVSLIAIIMGLNLLEALPLQLPSF-GGMEWISPDLPKGIRSYLIGLTFGLVASPCSTPVLATLLAWVASTQDWVLGGVLLLSYTAGYVTPLIVAGTFTASIKKLLEVRQWSSWITPVSGALLVGFGVFSLLSRIPG 243          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: UPI0019F72B38 (Sulfite exporter TauE/SafE family protein n=1 Tax=Synechococcales cyanobacterium C42_A2020_086 TaxID=2774344 RepID=UPI0019F72B38)

HSP 1 Score: 179 bits (453), Expect = 9.820e-50
Identity = 113/244 (46.31%), Postives = 159/244 (65.16%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYM-TSLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLSAIF 728
            LTH+S V+IGV++  GLL SL+PC LS+LP+TI YI G E +   + A +                S  FA GLAT L+ LG++AT  GKV G        LG   LP++ SA A+ MGLN+LE+V L LPS+ GG++++ T LP+  R+Y +G +  LVASPC TPVLA++L +++++QDP LG VLLL Y+AGY  PL+ AGT +  + +L+  +  + WITPASGALLI +G ++ L  +F
Sbjct:   24 LTHLSLVSIGVIFLAGLLTSLTPCMLSMLPITIGYIGGYETKTRLQAAVQ----------------STWFALGLATTLAALGIAATVVGKVYGQVG-----LG---LPIVVSAIAILMGLNLLEIVPLRLPSW-GGMDWISTDLPEGVRSYFIGLTFGLVASPCSTPVLATLLAWVSTTQDPLLGSVLLLAYTAGYVAPLILAGTFTASIKKLLELRRWSGWITPASGALLIGFGVFSLLFRLF 242          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: A0A8J7FT87_9CYAN (Sulfite exporter TauE/SafE family protein n=2 Tax=Pseudanabaenales TaxID=2881377 RepID=A0A8J7FT87_9CYAN)

HSP 1 Score: 177 bits (450), Expect = 2.720e-49
Identity = 108/244 (44.26%), Postives = 162/244 (66.39%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLSAIF 728
            LTH++P+++G+++G GLL SL+PC LS+LP+TI YI G EA+   + A                I S  FA GLAT L+ LG++A   GKV G       ++G   LP++ S  A+ MGLN+LE + L LP++ GG+E++++ LP+  R+YL+G +  LVASPC TPVLA++L +I+++QDPALG VLLL Y+ GY  PL+ AGT +  + +++  +  + WITPASGALL+ +G ++ L  +F
Sbjct:   24 LTHLTPLSVGIIFGAGLLTSLTPCMLSMLPITIGYIGGYEAKTRWQAA----------------IQSTWFALGLATTLAGLGIAAAIVGKVYG-------QVGIG-LPIVVSVIAILMGLNLLEALPLRLPAW-GGMEWISNDLPEGVRSYLIGLTFGLVASPCSTPVLATLLAWISTTQDPALGSVLLLAYATGYVAPLILAGTFTASIKKILEVRRWSGWITPASGALLVGFGVFSLLFRLF 242          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: C1E9C4_MICCC (DsbD domain-containing protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E9C4_MICCC)

HSP 1 Score: 177 bits (448), Expect = 1.990e-48
Identity = 115/252 (45.63%), Postives = 156/252 (61.90%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAG----SEAEGAAEEATEGREMGGFESLKGG-----FIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMT-SLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLSAI 725
            L +V+P+T  V+   GL+ SLSPC LS+LPLTI YI G     EAE   E+ TE       E++         +   AFAAGLA+ L+ LG+ A  AGK  G     GG+    +LP+  S  AVAMGLN+LE++ +  PSF    +    SLP  A+AYL G + AL ASPC TPVLA++L +++S+ DP  G  LLLTY++GY  PL+AA TA+G L R+M+A+    W+TPASG +L++ GTY  LS +
Sbjct:   38 LENVTPITFAVVLVAGLVTSLSPCTLSVLPLTIGYIGGYAGPKEAEQGPEDETEEARARRLEAVAKAKADALLVNGFAFAAGLASTLAALGVGAATAGKAYGQ---VGGD--GPILPIAVSVLAVAMGLNLLEVIVVQFPSFGTDFDARKMSLPPPAQAYLAGLAFALAASPCSTPVLATLLAYVSSTGDPVTGGALLLTYTSGYVAPLLAAATATGSLGRIMSARQYTAWVTPASGLMLVAGGTYGFLSRV 284          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: R1BZD3_EMIHU (DsbD domain-containing protein (Fragment) n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BZD3_EMIHU)

HSP 1 Score: 174 bits (442), Expect = 2.950e-48
Identity = 115/243 (47.33%), Postives = 153/243 (62.96%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGS---SATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFE---GGLEYMTSLPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTA-KGLNWITPASGALLISYGTYN 710
            LT +SPV+  V+YG GLL SL+PC LS+LPLT+SYI      G+ +E                F  S AFA GLA  LS LG++A  AG ++GS   SA+F        L LL S     +GLN+L+++  +LPS E   GG+    SLP+ ARA+L GASSALVASPC +PVL S+LGF+A+  DP LG  LL  YS G TTP++ AG A+G  +R+++A +   W+TPASG+ L++ GTYN
Sbjct:    8 LTSLSPVSALVLYGAGLLTSLTPCCLSMLPLTMSYIGS----GSFDEGXXXXXXXXXXXXXXSFGASLAFAGGLACSLSALGVAAASAGAMLGSGTESASF------AALRLLVSLLTCVLGLNLLKVLPFELPSLELSTGGV----SLPRPARAFLFGASSALVASPCASPVLVSLLGFVATQGDPLLGAALLTAYSLGETTPVLLAGIAAGSATRIVSAQRRFEWVTPASGSALLAIGTYN 236          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: UPI001ABADE57 (sulfite exporter TauE/SafE family protein n=1 Tax=Aetokthonos hydrillicola TaxID=1550245 RepID=UPI001ABADE57)

HSP 1 Score: 174 bits (442), Expect = 3.960e-48
Identity = 110/243 (45.27%), Postives = 156/243 (64.20%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLSAI 725
            LTH+S +++ +++G GLL SL+PC LS+LP+TI YI G EAE   + A +                S  FA GLAT L+ LG+ A + GKV G       ++G   LP++ S  A+ MGLN+LE + L LP+  GG+E+++  LPK  RAY LG S  LVASPC TPVLAS+LG++A++QD  LG VLLL+Y+AGY  PL+ AGT +  + +L+  +  + WI P SGALL+ +G ++ +S I
Sbjct:   24 LTHISWLSVVIIFGAGLLTSLTPCMLSMLPITIGYIGGYEAENRLQAAAQ----------------STWFALGLATTLAGLGIIAAFVGKVYG-------QVG-VGLPIIVSILAILMGLNLLEALPLQLPA-TGGIEWISQELPKELRAYSLGLSFGLVASPCSTPVLASLLGWVANTQDLILGAVLLLSYTAGYVAPLILAGTFTASIKKLLELRRWSAWINPVSGALLVGFGVFSLISRI 241          
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Match: A0A0S3U077_9CYAN (Cytochrome C biogenesis protein, transmembrane region n=5 Tax=Cyanobacteria TaxID=1117 RepID=A0A0S3U077_9CYAN)

HSP 1 Score: 174 bits (440), Expect = 7.140e-48
Identity = 110/241 (45.64%), Postives = 154/241 (63.90%), Query Frame = 3
Query:    3 LTHVSPVTIGVMYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLKGGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLASAFAVAMGLNVLELVKLDLPSFEGGLEYMTS-LPKNARAYLLGASSALVASPCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSRLMTAKGLN-WITPASGALLISYGTYNGLS 719
            L H++PV+IGV++  GLL SL+PC LS+LP+TI YI G EA+   + A +                S  F+ GLAT L+ LG+ AT  GKV G       ++G T LP++ S  A+ MGLN+LE +   +PS  GG E++++ LP   R+YLLG +  LVASPC TPVLA+IL +IAS+ DP LG  LLL Y+AGY  PL+ AGT +  + +L+  +  + WITPASGALL+ +G ++ +S
Sbjct:   24 LAHITPVSIGVIFAAGLLTSLTPCTLSMLPITIGYIGGYEAKSRLQAAAQ----------------STWFSLGLATTLAGLGIGATLLGKVYG-------QVG-TGLPIVVSVVAILMGLNLLEALPFAMPSI-GGTEWISNELPAGVRSYLLGVTFGLVASPCSTPVLATILAWIASTGDPILGGSLLLCYTAGYVAPLILAGTFTAAIKKLLELRRWSAWITPASGALLVGFGVFSLMS 239          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6209.14797.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YY77_9STRA3.990e-9068.80Cytochrome c biogenesis protein, thiol reduction t... [more]
A0A4D9CLR8_9STRA2.550e-6051.64DsbD domain-containing protein n=2 Tax=Monodopsida... [more]
A0A0G4H6S3_VITBC1.180e-5246.59DsbD domain-containing protein n=1 Tax=Vitrella br... [more]
B4VM33_9CYAN1.250e-5046.53Cytochrome C biogenesis protein transmembrane regi... [more]
UPI0019F72B389.820e-5046.31Sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
A0A8J7FT87_9CYAN2.720e-4944.26Sulfite exporter TauE/SafE family protein n=2 Tax=... [more]
C1E9C4_MICCC1.990e-4845.63DsbD domain-containing protein n=2 Tax=Micromonas ... [more]
R1BZD3_EMIHU2.950e-4847.33DsbD domain-containing protein (Fragment) n=2 Tax=... [more]
UPI001ABADE573.960e-4845.27sulfite exporter TauE/SafE family protein n=1 Tax=... [more]
A0A0S3U077_9CYAN7.140e-4845.64Cytochrome C biogenesis protein, transmembrane reg... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6209contigL-elsbetiae_contig6209:8004..10178 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score172.6
Seed ortholog evalue2.2e-40
Seed eggNOG ortholog296587.XP_002503399.1
Preferred nameCCDA
KEGG koko:K06196
KEGG TC5.A.1.2
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008150,GO:0009536,GO:0009579,GO:0009987,GO:0010190,GO:0016020,GO:0016043,GO:0017004,GO:0022607,GO:0031976,GO:0031984,GO:0034357,GO:0034622,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0065003,GO:0071840
EggNOG free text desc.Cytochrome C biogenesis protein transmembrane region
EggNOG OGs2QR2K@2759,34HAG@3041,37KXE@33090,COG0785@1
COG Functional cat.O
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons3
Model size1367
Cds size705
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6209.14797.1prot_L-elsbetiae_contig6209.14797.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6209 8631..10143 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.4672112-UTR-L-elsbetiae_contig6209:8003..86301622816681.4672112-UTR-L-elsbetiae_contig6209:8003..8630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6209 8004..8630 -
1691683735.984498-UTR-L-elsbetiae_contig6209:8003..86301691683735.984498-UTR-L-elsbetiae_contig6209:8003..8630Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6209 8004..8630 -
1622816681.5152664-UTR-L-elsbetiae_contig6209:10143..101781622816681.5152664-UTR-L-elsbetiae_contig6209:10143..10178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6209 10144..10178 -
1691683736.029085-UTR-L-elsbetiae_contig6209:10143..101781691683736.029085-UTR-L-elsbetiae_contig6209:10143..10178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6209 10144..10178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816681.4791696-CDS-L-elsbetiae_contig6209:8630..89111622816681.4791696-CDS-L-elsbetiae_contig6209:8630..8911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6209 8631..8911 -
1691683735.9986396-CDS-L-elsbetiae_contig6209:8630..89111691683735.9986396-CDS-L-elsbetiae_contig6209:8630..8911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6209 8631..8911 -
1622816681.4907115-CDS-L-elsbetiae_contig6209:9407..96471622816681.4907115-CDS-L-elsbetiae_contig6209:9407..9647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6209 9408..9647 -
1691683736.0085375-CDS-L-elsbetiae_contig6209:9407..96471691683736.0085375-CDS-L-elsbetiae_contig6209:9407..9647Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6209 9408..9647 -
1622816681.5034165-CDS-L-elsbetiae_contig6209:9959..101431622816681.5034165-CDS-L-elsbetiae_contig6209:9959..10143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6209 9960..10143 -
1691683736.01835-CDS-L-elsbetiae_contig6209:9959..101431691683736.01835-CDS-L-elsbetiae_contig6209:9959..10143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6209 9960..10143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6209.14797.1

>prot_L-elsbetiae_contig6209.14797.1 ID=prot_L-elsbetiae_contig6209.14797.1|Name=mRNA_L-elsbetiae_contig6209.14797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=235bp
MYGTGLLMSLSPCALSLLPLTISYIAGSEAEGAAEEATEGREMGGFESLK
GGFIPSAAFAAGLATVLSLLGLSATYAGKVMGSSATFGGELGSTVLPLLA
SAFAVAMGLNVLELVKLDLPSFEGGLEYMTSLPKNARAYLLGASSALVAS
PCCTPVLASILGFIASSQDPALGLVLLLTYSAGYTTPLMAAGTASGVLSR
LMTAKGLNWITPASGALLISYGTYNGLSAIFGSA*
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mRNA from alignment at L-elsbetiae_contig6209:8004..10178-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6209.14797.1 ID=mRNA_L-elsbetiae_contig6209.14797.1|Name=mRNA_L-elsbetiae_contig6209.14797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2175bp|location=Sequence derived from alignment at L-elsbetiae_contig6209:8004..10178- (Laminarionema elsbetiae ELsaHSoW15)
AGCTGACGCACGTGAGTCCTGTCACCATAGGGGTGATGTACGGGACGGGG CTGCTTATGTCTCTCAGTCCGTGCGCGCTGTCGCTGCTACCGCTGACGAT TTCTTACATCGCGGGGTCGGAGGCGGAGGGAGCCGCTGAGGAGGCCACAG AAGGCAGAGAAATGGGGGGTTTTGAGTCACTCAAGGGCGGCTTCATTCCG TCGGCAGCGTTCGCTGCAGGTGACTCTCCCGCCCCTCACGGACAGAGGGT ATGCGTGTACAGGGCCGTCTGTGGACCTACCGCTTAGTGTCGTACAGCGA GTCGACGCTTTGCGGCATATGTGGCGTGCATGTTTTCGTTGACTTGTGTT GTAAGTTGATTTGCTGTCGAAACCTGCTGGTCTAAAAACAGAAAACAGAG GTAATATATTCGCTCTCTCGCCGCGGGCACGTCAATCTTGTCATTATTTT TCATCCGAATGGCTTATCATCCCACCCCCTTCCCTCCTGTCTTGATTTTT TGTTTGTCGCGGAACGCGGATAACTCGAAAGGGCTGGCGACCGTGCTCTC GCTGCTCGGCCTCTCTGCGACGTACGCCGGGAAGGTCATGGGCAGCAGCG CCACCTTCGGTGGCGAGCTGGGCTCGACCGTCTTGCCGCTGCTGGCGTCG GCTTTCGCGGTGGCGATGGGCCTCAACGTGCTGGAGCTCGTGAAGCTAGA CCTTCCGTCGTTCGAGGGGGGGCTTGAGTACATGACAAGCCTGCCCAAAA ATGCCCGCGCTTACTTGCTAGGTGAGAGGCTCTTCTGATCGAAAGACGGT GGCCGGAGCTTGCTTCCGGACTTTTCGGGGTGGGGGTACCGTAGACGCGA ATGTAACAGCGGTAACGGCCTACAGTTTTGCCTGTGGCTAGAACGCGCAG TATATCACCCCCCTTGAGTGTTGGTTGGGATAAGGGTACGTCGCCGACCG CACACGAGCAAAGCGTCACGGCCGCCCAATCGCCTTTCTACCAACTACAA TACCATAAGCAAAGGGAGAGGGGAGGGGAGGCGCTTGCTCCTTCAGACAC TGGCTTCATTTTCATGTCTGGTTGCCTGCCGCAGTAAGCCCTGCACGCGC CTCCACGGGCCCCTGCTTGTGACCGACAAGCTTTGTGCCCGACCCTTTCA TCACGAGCAGTACCACAAAGTAGATTTGTCACGCGGTTGAACACTAAACA ATAGTCCCCCCGCCGGCCACACTCGTGCGTATCCCCCCCCCCTCCCCCCG TCCCCACACACACGCAGGCGCATCTTCCGCTCTCGTGGCGTCGCCGTGCT GCACCCCGGTGCTTGCTTCCATCCTCGGCTTCATCGCGTCCTCTCAGGAC CCGGCCCTCGGGCTCGTCCTGCTTCTGACCTACTCGGCGGGGTACACGAC GCCGCTCATGGCCGCCGGCACCGCCAGCGGGGTGCTCTCGCGGCTGATGA CGGCCAAGGGGCTGAACTGGATAACGCCGGCAAGCGGGGCCCTGCTCATC TCGTACGGGACGTACAACGGGCTCTCCGCGATCTTCGGTTCGGCGTGACT CTTGCCTGCCCCTTCTCTCTCCCTCGCCCCGCGCGCGCGCGGGGGGGCTC TGTTGTGGATGGTAAACATGAGCGAAATACTTGTGTCAAGAGTTCTACGT CTTCTGGCTCAGCGGTTTGGGTCTGCTGTGTTGCACTACTATTGCTGTGT TTCGTGTTTGAGGTGCTCGTCTTTCTCCTCTCGCTGCGTTTTGAGGACCT ATTTAGGTGCCGTAACACTGCTGTTCGAGGTTTTTCAGCCTGCCCCCGCT GTCACAACTACGAACACGAGGATATCTCGCCGTGGTTGACGATTCGTCCA CAATCGCCGACTTTTTTTCGAGACCGTGCAGACGCTATGTAGATTATTTT CCCCACACAAGTGCTAGATGTTCATGTGTGTTTGGATGCGTAACGGGTTG GTGGTTCTAGAGGGTTAAATTGGGTGATACCAGTGTATTTATCGGCCATG GGGTACATAAACAATGTACATTTTTATCTGCTTATTTTTGCTTAGGAATT GACCCGAGCGTATCGGTTGACGGAAGCATGCCCGGCATAGCTCATTCCCG ATACGTGAGGTGAACCTTTCGTGTACGACTCATGTCAGAAGTACTTTCCC CCTGTTGGTATAGGCTTCAATCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6209:8004..10178-

>mRNA_L-elsbetiae_contig6209.14797.1 ID=mRNA_L-elsbetiae_contig6209.14797.1|Name=mRNA_L-elsbetiae_contig6209.14797.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1410bp|location=Sequence derived from alignment at L-elsbetiae_contig6209:8004..10178- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACGGGACGGGGCTGCTTATGTCTCTCAGTCCGTGCGCGCTGTCGCT
GCTACCGCTGACGATTTCTTACATCGCGGGGTCGGAGGCGGAGGGAGCCG
CTGAGGAGGCCACAGAAGGCAGAGAAATGGGGGGTTTTGAGTCACTCAAG
GGCGGCTTCATTCCGTCGGCAGCGTTCGCTGCAGATGTACGGGACGGGGC
TGCTTATGTCTCTCAGTCCGTGCGCGCTGTCGCTGCTACCGCTGACGATT
TCTTACATCGCGGGGTCGGAGGCGGAGGGAGCCGCTGAGGAGGCCACAGA
AGGCAGAGAAATGGGGGGTTTTGAGTCACTCAAGGGCGGCTTCATTCCGT
CGGCAGCGTTCGCTGCAGGGCTGGCGACCGTGCTCTCGCTGCTCGGCCTC
TCTGCGACGTACGCCGGGAAGGTCATGGGCAGCAGCGCCACCTTCGGTGG
CGAGCTGGGCTCGACCGTCTTGCCGCTGCTGGCGTCGGCTTTCGCGGTGG
CGATGGGCCTCAACGTGCTGGAGCTCGTGAAGCTAGACCTTCCGTCGTTC
GAGGGGGGGCTTGAGTACATGACAAGCCTGCCCAAAAATGCCCGCGCTTA
CTTGCTAGGGCTGGCGACCGTGCTCTCGCTGCTCGGCCTCTCTGCGACGT
ACGCCGGGAAGGTCATGGGCAGCAGCGCCACCTTCGGTGGCGAGCTGGGC
TCGACCGTCTTGCCGCTGCTGGCGTCGGCTTTCGCGGTGGCGATGGGCCT
CAACGTGCTGGAGCTCGTGAAGCTAGACCTTCCGTCGTTCGAGGGGGGGC
TTGAGTACATGACAAGCCTGCCCAAAAATGCCCGCGCTTACTTGCTAGGC
GCATCTTCCGCTCTCGTGGCGTCGCCGTGCTGCACCCCGGTGCTTGCTTC
CATCCTCGGCTTCATCGCGTCCTCTCAGGACCCGGCCCTCGGGCTCGTCC
TGCTTCTGACCTACTCGGCGGGGTACACGACGCCGCTCATGGCCGCCGGC
ACCGCCAGCGGGGTGCTCTCGCGGCTGATGACGGCCAAGGGGCTGAACTG
GATAACGCCGGCAAGCGGGGCCCTGCTCATCTCGTACGGGACGTACAACG
GGCTCTCCGCGATCTTCGGTTCGGCGTGAGCGCATCTTCCGCTCTCGTGG
CGTCGCCGTGCTGCACCCCGGTGCTTGCTTCCATCCTCGGCTTCATCGCG
TCCTCTCAGGACCCGGCCCTCGGGCTCGTCCTGCTTCTGACCTACTCGGC
GGGGTACACGACGCCGCTCATGGCCGCCGGCACCGCCAGCGGGGTGCTCT
CGCGGCTGATGACGGCCAAGGGGCTGAACTGGATAACGCCGGCAAGCGGG
GCCCTGCTCATCTCGTACGGGACGTACAACGGGCTCTCCGCGATCTTCGG
TTCGGCGTGA
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