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Homology
BLAST of mRNA_L-elsbetiae_contig6209.14795.1 vs. uniprot
Match: D8LD19_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD19_ECTSI) HSP 1 Score: 83.6 bits (205), Expect = 1.360e-17 Identity = 40/60 (66.67%), Postives = 42/60 (70.00%), Query Frame = 1
Query: 151 PCVGFSNASFGRFGNARRVWPPAHVQIAHPSIGVAALVNGGRFRARASFRDMIKGRGVAG 330
PC GF+N RFGN RRVWPP VQIAHPS+GVA LVNG RFRARA D IK AG
Sbjct: 18 PCAGFTNFPASRFGNTRRVWPPPQVQIAHPSLGVATLVNGARFRARAGLGDFIKSAQGAG 77
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 83.6 |
| Seed ortholog evalue | 6.4e-14 |
| Seed eggNOG ortholog | 2880.D8LD19 |
| KEGG ko | ko:K17986 |
| KEGG Pathway | ko04137,map04137 |
| Hectar predicted targeting category | other localisation |
| EggNOG free text desc. | FUN14 family |
| EggNOG OGs | 2E0R4@1,2S850@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko03029,ko04131 |
| Ec32 ortholog description | FUN14 |
| Ec32 ortholog | Ec-01_001940.1 |
| Exons | 3 |
| Model size | 330 |
| Cds size | 330 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816681.2618408-CDS-L-elsbetiae_contig6209:1452..1597 | 1622816681.2618408-CDS-L-elsbetiae_contig6209:1452..1597 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6209 1453..1597 - |
| 1691683735.8227983-CDS-L-elsbetiae_contig6209:1452..1597 | 1691683735.8227983-CDS-L-elsbetiae_contig6209:1452..1597 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6209 1453..1597 - |
| 1622816681.272959-CDS-L-elsbetiae_contig6209:1981..2112 | 1622816681.272959-CDS-L-elsbetiae_contig6209:1981..2112 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6209 1982..2112 - |
| 1691683735.8389459-CDS-L-elsbetiae_contig6209:1981..2112 | 1691683735.8389459-CDS-L-elsbetiae_contig6209:1981..2112 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6209 1982..2112 - |
| 1622816681.2833002-CDS-L-elsbetiae_contig6209:2255..2309 | 1622816681.2833002-CDS-L-elsbetiae_contig6209:2255..2309 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6209 2256..2309 - |
| 1691683735.8502803-CDS-L-elsbetiae_contig6209:2255..2309 | 1691683735.8502803-CDS-L-elsbetiae_contig6209:2255..2309 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6209 2256..2309 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6209.14795.1 >prot_L-elsbetiae_contig6209.14795.1 ID=prot_L-elsbetiae_contig6209.14795.1|Name=mRNA_L-elsbetiae_contig6209.14795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
RAHSPHTQAPTYVPEREKEHTRATRIHHWLGPMAPRRRGTGQLLGGGMDA
PCVGFSNASFGRFGNARRVWPPAHVQIAHPSIGVAALVNGGRFRARASFR
DMIKGRGVAG back to topmRNA from alignment at L-elsbetiae_contig6209:1453..2309- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6209.14795.1 ID=mRNA_L-elsbetiae_contig6209.14795.1|Name=mRNA_L-elsbetiae_contig6209.14795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=857bp|location=Sequence derived from alignment at L-elsbetiae_contig6209:1453..2309- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCCCATTCGCCTCACACGCAGGCGCCAACGTACGTACCGGAGAGAGA
AAAGGTAGGGATATGTGCATGCATTCATGTGTGCGTGCCCTGATCGATCG
ACGAAGCATGAACAAGCAAGCTCTGTTCTGAATAGTCCACACTCCTCCTG
TGACAAAACGCCGCGGACCCTGCGCTTGTCGACTGCGATTTTTTCAGGAG
CACACAAGAGCGACCAGAATACATCACTGGCTTGGACCGATGGCTCCCAG
ACGGCGAGGAACAGGGCAGCTCCTGGGTGGAGGCATGGACGCCCCGTGTG
TGGGGTTTAGCAATGCCTCATTCGGCAGGTGAGTGTTTTTCCAAACTCTC
CGCCTCAAAAATGATGTCATCCAACTCGAGTCTACCAGCGACCGCCCTCT
CCCTCCCTCCCTGGGCACCTTTTCAATCGCTGACATGACGCCATTGAAAA
GCTCTATGGGTCCGCACAGCTCCGAGATAAACTGGCTTTGCGGCCATACC
ACACGGGGCGATGATGGAGCCGGGCTCATTTTGCTCTTCGTCACCAGATA
GACTTCATACAGACCTCCTGAAAAATAAGAGGAGAAAGAAAAGAAACGTC
GCGCCGCATCTTGCACAACGTCACGCGCGTCACTCTCCTTCCTCCTTGTC
TCACGGTGTCCAACGATGATCGCTCCGGCCCCCGCACGCCGCGCCGCCCC
CGACAACAACAGGTTCGGCAACGCTAGGCGTGTCTGGCCGCCCGCTCACG
TGCAGATCGCCCACCCTAGCATCGGGGTGGCGGCGCTCGTGAACGGCGGG
AGATTTCGCGCCCGGGCCAGCTTCCGAGACATGATCAAGGGCCGAGGGGT
GGCGGGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6209:1453..2309- >mRNA_L-elsbetiae_contig6209.14795.1 ID=mRNA_L-elsbetiae_contig6209.14795.1|Name=mRNA_L-elsbetiae_contig6209.14795.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig6209:1453..2309- (Laminarionema elsbetiae ELsaHSoW15)
CGGGCCCATTCGCCTCACACGCAGGCGCCAACGTACGTACCGGAGAGAGA
AAAGCGGGCCCATTCGCCTCACACGCAGGCGCCAACGTACGTACCGGAGA
GAGAAAAGGAGCACACAAGAGCGACCAGAATACATCACTGGCTTGGACCG
ATGGCTCCCAGACGGCGAGGAACAGGGCAGCTCCTGGGTGGAGGCATGGA
CGCCCCGTGTGTGGGGTTTAGCAATGCCTCATTCGGCAGGAGCACACAAG
AGCGACCAGAATACATCACTGGCTTGGACCGATGGCTCCCAGACGGCGAG
GAACAGGGCAGCTCCTGGGTGGAGGCATGGACGCCCCGTGTGTGGGGTTT
AGCAATGCCTCATTCGGCAGGTTCGGCAACGCTAGGCGTGTCTGGCCGCC
CGCTCACGTGCAGATCGCCCACCCTAGCATCGGGGTGGCGGCGCTCGTGA
ACGGCGGGAGATTTCGCGCCCGGGCCAGCTTCCGAGACATGATCAAGGGC
CGAGGGGTGGCGGGGGTTCGGCAACGCTAGGCGTGTCTGGCCGCCCGCTC
ACGTGCAGATCGCCCACCCTAGCATCGGGGTGGCGGCGCTCGTGAACGGC
GGGAGATTTCGCGCCCGGGCCAGCTTCCGAGACATGATCAAGGGCCGAGG
GGTGGCGGGG back to top
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