mRNA_L-elsbetiae_contig6208.14794.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: A0A6H5JVW4_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVW4_9PHAE) HSP 1 Score: 183 bits (464), Expect = 3.110e-52 Identity = 90/103 (87.38%), Postives = 97/103 (94.17%), Query Frame = 2 Query: 5 KSVVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAVKAGSAADVGIGEIPVPDLPPGTW 313 ++V+VTGR HG VEA +LE+SKGALFLGKAMV SATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLN+QHGGKLTGAVKA S ADVGIG+IPVPDLPPGTW Sbjct: 9 ENVIVTGRLHGNVEAKTLEISKGALFLGKAMVDSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNVQHGGKLTGAVKAASPADVGIGDIPVPDLPPGTW 111
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: D7FXK9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXK9_ECTSI) HSP 1 Score: 173 bits (438), Expect = 5.570e-48 Identity = 86/103 (83.50%), Postives = 94/103 (91.26%), Query Frame = 2 Query: 5 KSVVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAVKAGSAADVGIGEIPVPDLPPGTW 313 ++V+VTGR HG VEA +LE+SKGALFLGKAMV SATVAGRLEGILVVG+ML MRSSGH DGV RYGQLN+QHGGKLTGAVKA S ADVGIG+IPVPDLPPGTW Sbjct: 55 ENVIVTGRLHGNVEAKTLEISKGALFLGKAMVGSATVAGRLEGILVVGNMLPMRSSGHWDGVFRYGQLNVQHGGKLTGAVKAASPADVGIGDIPVPDLPPGTW 157
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: UPI0018724465 (polymer-forming cytoskeletal protein n=1 Tax=Pelagibius sp. NBU2595 TaxID=2762760 RepID=UPI0018724465) HSP 1 Score: 66.2 bits (160), Expect = 1.260e-11 Identity = 30/78 (38.46%), Postives = 53/78 (67.95%), Query Frame = 2 Query: 11 VVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAV 244 ++V G+ ++EA+ L + +G ++ GKA+V+SA++ GR +G L V +LT+++ G G LRY L I+ GG+L+G + Sbjct: 40 LIVEGKVEASLEAAELTVREGGVYHGKAVVKSASIDGRFDGDLTVDGLLTIQAGGRVSGALRYRDLKIERGGRLSGDI 117
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: A0A6N6VHR0_9HYPH (Polymer-forming cytoskeletal protein n=1 Tax=Parvibaculum sedimenti TaxID=2608632 RepID=A0A6N6VHR0_9HYPH) HSP 1 Score: 67.0 bits (162), Expect = 1.900e-11 Identity = 34/87 (39.08%), Postives = 53/87 (60.92%), Query Frame = 2 Query: 8 SVVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAVKAGSAADV 268 S+V+ G T+E+ +L +S+ G+A V A + GR +G LVV LT+ ++G G +RYG+L ++ GG+LTG V+A A V Sbjct: 89 SLVIEGDVQATIESGTLTISETGEVRGEATVDQAEIQGRFDGTLVVRKCLTINATGKVTGTIRYGELKVEQGGRLTGQVEAAEAGAV 175
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: A0A286GAA9_9PROT (Protein CcmA, bactofilin family n=1 Tax=Caenispirillum bisanense TaxID=414052 RepID=A0A286GAA9_9PROT) HSP 1 Score: 67.0 bits (162), Expect = 3.570e-11 Identity = 32/86 (37.21%), Postives = 55/86 (63.95%), Query Frame = 2 Query: 8 SVVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAVKAGSAAD 265 ++VV G +++ + ++KG +F GK V +A VAG +G L V D L +R++G G +RYG L ++HGG+L+G+++ S A+ Sbjct: 114 TLVVEGTIEAAMDSHHIAIAKGGVFSGKVTVDTAEVAGAFDGDLTVRDRLLVRATGSISGTVRYGALEVEHGGRLSGSLELLSEAE 199
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: A0A2E8XTN8_9PROT (Cell shape determination protein CcmA n=1 Tax=Alphaproteobacteria bacterium TaxID=1913988 RepID=A0A2E8XTN8_9PROT) HSP 1 Score: 63.9 bits (154), Expect = 1.730e-10 Identity = 35/99 (35.35%), Postives = 55/99 (55.56%), Query Frame = 2 Query: 8 SVVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAV-KAGSAADVGIGEIPVPDLP 301 ++ V G T+ LE+++G F G A V A + G EG L V +L +RSSGH G ++YG++ ++ GG+++G V + +AA G I P P Sbjct: 62 TLAVEGTMDATLVGEVLEIAEGGQFTGTATVSEAQIHGHFEGDLTVSGVLQIRSSGHVTGTIKYGRIEVESGGEISGNVTRDEAAAPFGTKRITAPAAP 160
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: UPI0003FA0BD4 (polymer-forming cytoskeletal protein n=2 Tax=Inquilinus TaxID=171673 RepID=UPI0003FA0BD4) HSP 1 Score: 61.6 bits (148), Expect = 1.770e-9 Identity = 35/95 (36.84%), Postives = 56/95 (58.95%), Query Frame = 2 Query: 11 VVVTGRFHGTV-EASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAVKAGSAADVGIGEIPVP 292 +VV GR + + ++E+++ +F G A +R +AGR EG L V +L +R+SG G ++YG+L ++ GGKL G ++ D G EIP P Sbjct: 68 LVVEGRIEAKIKDCQTIEIAEQGVFKGSAEIRDGDIAGRFEGDLSVSGLLRLRASGVVTGTIKYGELQVETGGKLIGTLQP-LGGDAGH-EIPAP 160
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: A0A3N1L1M1_9PROT (Cytoskeletal protein CcmA (Bactofilin family) n=1 Tax=Stella humosa TaxID=94 RepID=A0A3N1L1M1_9PROT) HSP 1 Score: 61.6 bits (148), Expect = 2.760e-9 Identity = 33/85 (38.82%), Postives = 51/85 (60.00%), Query Frame = 2 Query: 11 VVVTGRFHGTVEASSLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAVKAGSAAD 265 +VV GR T+ + +E+S LF G A + A V GR EG L+V L + ++G G +RYGQL ++ GG+L+G +++ S D Sbjct: 109 LVVEGRVEATLTSRVIEISDTGLFKGSAEIDEAEVRGRFEGDLIVRKRLFIGATGRVSGKVRYGQLEVEAGGQLSGDIRSTSDDD 193
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: A0A3R7WF83_9PROT (Polymer-forming cytoskeletal protein n=2 Tax=Alphaproteobacteria TaxID=28211 RepID=A0A3R7WF83_9PROT) HSP 1 Score: 60.8 bits (146), Expect = 6.280e-9 Identity = 33/76 (43.42%), Postives = 48/76 (63.16%), Query Frame = 2 Query: 32 HGTVEAS-----SLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTGAV 244 G+VEAS +LE++ G F G A+V SA +AG EG L V +LT+ S+G G +R+G+L ++ GG +TG V Sbjct: 138 EGSVEASLMDSRALEVASGGYFTGTAVVDSAQIAGHFEGDLTVEGLLTLASTGRIIGTVRFGELEVERGGTMTGDV 213
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Match: UPI001F3C5772 (polymer-forming cytoskeletal protein n=1 Tax=Arenibaculum pallidiluteum TaxID=2812559 RepID=UPI001F3C5772) HSP 1 Score: 60.1 bits (144), Expect = 9.830e-9 Identity = 35/84 (41.67%), Postives = 51/84 (60.71%), Query Frame = 2 Query: 32 HGTVEAS-----SLELSKGALFLGKAMVRSATVAGRLEGILVVGDMLTMRSSGHCDGVLRYGQLNIQHGGKLTG---AVKAGSA 259 GTVEA S+E+++ LF G + A +AGR EG + V L +RSSG +G +RYG+L ++ GG+L G ++AGSA Sbjct: 102 EGTVEARLKDGRSIEIAETGLFKGSVEIDEADIAGRFEGDITVRGRLRVRSSGRINGSIRYGELEVEAGGRLKGDIQVIEAGSA 185 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6208.14794.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6208.14794.1 >prot_L-elsbetiae_contig6208.14794.1 ID=prot_L-elsbetiae_contig6208.14794.1|Name=mRNA_L-elsbetiae_contig6208.14794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp GEERGRDREVSRDCGGVEPRALQGGSVSWKGHGALGHRGRAVGGYPRGGRback to top mRNA from alignment at L-elsbetiae_contig6208:4345..7639- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6208.14794.1 ID=mRNA_L-elsbetiae_contig6208.14794.1|Name=mRNA_L-elsbetiae_contig6208.14794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3295bp|location=Sequence derived from alignment at L-elsbetiae_contig6208:4345..7639- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6208:4345..7639- >mRNA_L-elsbetiae_contig6208.14794.1 ID=mRNA_L-elsbetiae_contig6208.14794.1|Name=mRNA_L-elsbetiae_contig6208.14794.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6208:4345..7639- (Laminarionema elsbetiae ELsaHSoW15)back to top |