mRNA_L-elsbetiae_contig620.14785.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig620.14785.1 vs. uniprot
Match: A0A6H5KTR9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KTR9_9PHAE) HSP 1 Score: 153 bits (386), Expect = 6.740e-36 Identity = 225/422 (53.32%), Postives = 247/422 (58.53%), Query Frame = 1 Query: 76 MSSRQKKPDARALFKQAKSRKGENDAS--LGSSVAPVPGRGASSSKYVGK----SKEELLALLRAKQAIAAASKANASANQQ-----RRANAKSSGSQAVSATAPRAATQNAGERKPTVKVPVLTS-SGAGRPSAQLA-QGNVQAESGGLTGLLGIGAGDSSXXXXXXXXXXXXXGG----NGATPAPXXXXXXASLPAAIPEXXXAGFFDNDDAEDDAGGADTSENPAGSRENEQGAPAA--AGGFGAERAAELAXXXXXXXXXXAMREAEKLAALRAAGFVVPTPEGVAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAAAPNGSALPEGFFDDPDIDAQSRGVDLKAKKKEDEQNEWKDFMSFAEEVKKXXXXXXXXXXXXXXXXXXXXXXXQATMMGRLALLMNKSESIVRK 1284 MS+ QKKPDARALFKQAKSRKGEN + + + V GR + SKEELLAL RAK+ +R + KSSGS A RKPTVKVPV+T+ SGAGRPS Q A +G VQAE GLTGLLGIGAGDSSXXXXXXXXXXXXX + T A XXX PE AGFFD D A P A G FGAERAAELA XXXXXXXX +REAEKLAA+RAAG +V +G XXXXXXXXXXXXXXX APNGSALPEGFFDDP++DA+SRGVDLKA+KK XXXXXXXXXXXXXXXXXXXXXX QATMMGRLALLMNKSESI+ + Sbjct: 1 MSNHQKKPDARALFKQAKSRKGENSGKNVVSAGGSAVSGRSGAXXXXXXXXXXXSKEELLALYRAKKXXXXXXXXXXXXXXXXXXXTQRPSDKSSGSPATG-------------RKPTVKVPVMTAASGAGRPSVQPAPRGQVQAEGVGLTGLLGIGAGDSSXXXXXXXXXXXXXXXXXXRHPGTDAAPVSXXXXXXXXXXPEGLPAGFFDEDLAXXXXXXXXXXXXXXXXXXXXXXRPQAPPVGRFGAERAAELAAEXXXXXXXXXLREAEKLAAMRAAGLLVVAADGATGGAAADXXXXXXXXXXXXXXX----------------APNGSALPEGFFDDPEMDAKSRGVDLKAEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEQATMMGRLALLMNKSESIITR 393 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig620.14785.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig620.14785.1 >prot_L-elsbetiae_contig620.14785.1 ID=prot_L-elsbetiae_contig620.14785.1|Name=mRNA_L-elsbetiae_contig620.14785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=540bp MSSRQKKPDARALFKQAKSRKGENDASLGSSVAPVPGRGASSSKYVGKSKback to top mRNA from alignment at L-elsbetiae_contig620:9012..14748+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig620.14785.1 ID=mRNA_L-elsbetiae_contig620.14785.1|Name=mRNA_L-elsbetiae_contig620.14785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5737bp|location=Sequence derived from alignment at L-elsbetiae_contig620:9012..14748+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig620:9012..14748+ >mRNA_L-elsbetiae_contig620.14785.1 ID=mRNA_L-elsbetiae_contig620.14785.1|Name=mRNA_L-elsbetiae_contig620.14785.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3240bp|location=Sequence derived from alignment at L-elsbetiae_contig620:9012..14748+ (Laminarionema elsbetiae ELsaHSoW15)back to top |