mRNA_L-elsbetiae_contig6190.14769.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6190.14769.1
Unique NamemRNA_L-elsbetiae_contig6190.14769.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6190.14769.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6190contigL-elsbetiae_contig6190:2814..3322 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size510
Cds size429
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.7891064-UTR-L-elsbetiae_contig6190:2813..28931622816678.7891064-UTR-L-elsbetiae_contig6190:2813..2893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6190 2814..2893 +
1691683733.820814-UTR-L-elsbetiae_contig6190:2813..28931691683733.820814-UTR-L-elsbetiae_contig6190:2813..2893Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6190 2814..2893 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816678.8049562-CDS-L-elsbetiae_contig6190:2893..33221622816678.8049562-CDS-L-elsbetiae_contig6190:2893..3322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6190 2894..3322 +
1691683733.832251-CDS-L-elsbetiae_contig6190:2893..33221691683733.832251-CDS-L-elsbetiae_contig6190:2893..3322Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6190 2894..3322 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6190.14769.1prot_L-elsbetiae_contig6190.14769.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6190 2894..3322 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6190.14769.1

>prot_L-elsbetiae_contig6190.14769.1 ID=prot_L-elsbetiae_contig6190.14769.1|Name=mRNA_L-elsbetiae_contig6190.14769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=143bp
MPACSDSSAKYQRCSEIVGSSLPYLRSVFNPTPCACELLSSMLKFACCAC
FPLYLTLFENSRVTFASCPCLDEGINHGVRLRGVDTNIHPMDRKKGGSRK
ETSFVRTTRPKAWLILLAFCCCCCPGHAVAPIHHISRPPQHLP
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mRNA from alignment at L-elsbetiae_contig6190:2814..3322+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6190.14769.1 ID=mRNA_L-elsbetiae_contig6190.14769.1|Name=mRNA_L-elsbetiae_contig6190.14769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=509bp|location=Sequence derived from alignment at L-elsbetiae_contig6190:2814..3322+ (Laminarionema elsbetiae ELsaHSoW15)
AGGCCTTTCTCGAAGAATAATCGCATACCCTCGCTGAACATCACGGAGCC
TCACTTGGAGTTTGTGTGGGTTTTTCAAAAATGCCGGCGTGTTCGGACAG
TTCTGCGAAATATCAGAGGTGCTCCGAGATTGTCGGCTCTTCTTTGCCGT
ATTTGCGGAGCGTTTTTAACCCCACCCCTTGCGCGTGTGAACTACTGTCT
AGTATGCTCAAATTCGCTTGCTGTGCATGTTTCCCCCTCTATCTCACACT
CTTTGAAAACAGCCGGGTTACATTCGCGTCGTGTCCGTGTCTTGATGAAG
GCATAAACCACGGCGTGAGGCTCCGGGGCGTGGACACAAATATTCACCCG
ATGGACCGGAAAAAGGGCGGTTCGAGAAAAGAAACATCCTTCGTGCGGAC
CACAAGACCGAAAGCGTGGCTTATACTTCTAGCTTTCTGCTGCTGCTGCT
GCCCAGGACATGCGGTGGCCCCTATACACCATATCAGTAGGCCTCCCCAG
CATCTTCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6190:2814..3322+

>mRNA_L-elsbetiae_contig6190.14769.1 ID=mRNA_L-elsbetiae_contig6190.14769.1|Name=mRNA_L-elsbetiae_contig6190.14769.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=858bp|location=Sequence derived from alignment at L-elsbetiae_contig6190:2814..3322+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGCGTGTTCGGACAGTTCTGCGAAATATCAGAGGTGCTCCGAGAT
TGTCGGCTCTTCTTTGCCGTATTTGCGGAGCGTTTTTAACCCCACCCCTT
GCGCGTGTGAACTACTGTCTAGTATGCTCAAATTCGCTTGCTGTGCATGT
TTCCCCCTCTATCTCACACTCTTTGAAAACAGCCGGGTTACATTCGCGTC
GTGTCCGTGTCTTGATGAAGGCATAAACCACGGCGTGAGGCTCCGGGGCG
TGGACACAAATATTCACCCGATGGACCGGAAAAAGGGCGGTTCGAGAAAA
GAAACATCCTTCGTGCGGACCACAAGACCGAAAGCGTGGCTTATACTTCT
AGCTTTCTGCTGCTGCTGCTGCCCAGGACATGCGGTGGCCCCTATACACC
ATATCAGTAGGCCTCCCCAGCATCTTCCGATGCCGGCGTGTTCGGACAGT
TCTGCGAAATATCAGAGGTGCTCCGAGATTGTCGGCTCTTCTTTGCCGTA
TTTGCGGAGCGTTTTTAACCCCACCCCTTGCGCGTGTGAACTACTGTCTA
GTATGCTCAAATTCGCTTGCTGTGCATGTTTCCCCCTCTATCTCACACTC
TTTGAAAACAGCCGGGTTACATTCGCGTCGTGTCCGTGTCTTGATGAAGG
CATAAACCACGGCGTGAGGCTCCGGGGCGTGGACACAAATATTCACCCGA
TGGACCGGAAAAAGGGCGGTTCGAGAAAAGAAACATCCTTCGTGCGGACC
ACAAGACCGAAAGCGTGGCTTATACTTCTAGCTTTCTGCTGCTGCTGCTG
CCCAGGACATGCGGTGGCCCCTATACACCATATCAGTAGGCCTCCCCAGC
ATCTTCCG
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