mRNA_L-elsbetiae_contig618.14759.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig618.14759.1
Unique NamemRNA_L-elsbetiae_contig618.14759.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig618.14759.1 vs. uniprot
Match: A0A6H5KL80_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL80_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 1.450e-44
Identity = 89/163 (54.60%), Postives = 107/163 (65.64%), Query Frame = 1 
Query:  103 VGGNAAGAAAAGALAEFRAAEELPG------------EEGAEQRVD-----AEECRVTGPCLWCEKDELGLEYCKKTQRRQEVRCPVELAGQNMAAGSAGAPGGGVGVLPSSVRYRPCDYAEEDDFQGLFNFWLAMLVVGALACFGMRRRQQKGGSLYDRRAK 540
            + GN   AA   ALAE R  +E  G            +   +Q V+      EEC+  GPC+WCEKDE+ LEYCK+T RR+EVRC V+ A QNMAAG AG   G VGVLPSSV+YR C YAEED+F GL +FW+ M+ VG  ACF +R+RQQKGGSLY RRAK
Sbjct:  238 ISGNVGAAAVGAALAELRETDEREGGKAEVVVAVGADDANEDQEVEXXXEAVEECKAIGPCVWCEKDEVSLEYCKETGRREEVRCTVQGAAQNMAAGVAG---GAVGVLPSSVKYRSCPYAEEDEFLGLLHFWIFMVAVGVSACFCLRKRQQKGGSLYSRRAK 397
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BLAST of mRNA_L-elsbetiae_contig618.14759.1 vs. uniprot
Match: D7G1T5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1T5_ECTSI)

HSP 1 Score: 141 bits (356), Expect = 7.320e-36
Identity = 66/109 (60.55%), Postives = 78/109 (71.56%), Query Frame = 1 
Query:  208 EECRVTGPCLWCEKDELGLEYCKKTQRRQEVRCPVELAGQNMAAGSAGAPGGGVGVLPSSVRYRPCDYAEEDDFQGLFNFWLAMLVVGALACFGMRRRQQKGGSLYDRR 534
            EEC+ TGPC+WCEKDE+ LEYC++T RR+EVRC V+ A QNMAAG AG   G VGVLPSSV+YR C YAEEDDF GLF+FW+ M+              +K GSLYD R
Sbjct:  139 EECKATGPCVWCEKDEVNLEYCRETGRREEVRCTVQGAEQNMAAGGAG---GAVGVLPSSVKYRSCAYAEEDDFLGLFHFWIVMVAXXXXXXXXXXXXXKKVGSLYDER 244
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig618.14759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KL80_9PHAE1.450e-4454.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1T5_ECTSI7.320e-3660.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig618contigL-elsbetiae_contig618:10789..14251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_004220.1
Exons3
Model size1268
Cds size543
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig618.14759.1prot_L-elsbetiae_contig618.14759.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig618 10789..13528 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.5190072-CDS-L-elsbetiae_contig618:10788..110851622816677.5190072-CDS-L-elsbetiae_contig618:10788..11085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig618 10789..11085 +
1691683732.9083133-CDS-L-elsbetiae_contig618:10788..110851691683732.9083133-CDS-L-elsbetiae_contig618:10788..11085Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig618 10789..11085 +
1622816677.5318072-CDS-L-elsbetiae_contig618:11862..120151622816677.5318072-CDS-L-elsbetiae_contig618:11862..12015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig618 11863..12015 +
1691683732.9232733-CDS-L-elsbetiae_contig618:11862..120151691683732.9232733-CDS-L-elsbetiae_contig618:11862..12015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig618 11863..12015 +
1622816677.545446-CDS-L-elsbetiae_contig618:13435..135281622816677.545446-CDS-L-elsbetiae_contig618:13435..13528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig618 13436..13528 +
1691683732.9340358-CDS-L-elsbetiae_contig618:13435..135281691683732.9340358-CDS-L-elsbetiae_contig618:13435..13528Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig618 13436..13528 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816677.5605562-UTR-L-elsbetiae_contig618:13528..142511622816677.5605562-UTR-L-elsbetiae_contig618:13528..14251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig618 13529..14251 +
1691683732.9445343-UTR-L-elsbetiae_contig618:13528..142511691683732.9445343-UTR-L-elsbetiae_contig618:13528..14251Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig618 13529..14251 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig618.14759.1

>prot_L-elsbetiae_contig618.14759.1 ID=prot_L-elsbetiae_contig618.14759.1|Name=mRNA_L-elsbetiae_contig618.14759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
SASGEEGAISGGGETGPAKGSTHDSSSGAGATRSVGGNAAGAAAAGALAE
FRAAEELPGEEGAEQRVDAEECRVTGPCLWCEKDELGLEYCKKTQRRQEV
RCPVELAGQNMAAGSAGAPGGGVGVLPSSVRYRPCDYAEEDDFQGLFNFW
LAMLVVGALACFGMRRRQQKGGSLYDRRAK*
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mRNA from alignment at L-elsbetiae_contig618:10789..14251+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig618.14759.1 ID=mRNA_L-elsbetiae_contig618.14759.1|Name=mRNA_L-elsbetiae_contig618.14759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3463bp|location=Sequence derived from alignment at L-elsbetiae_contig618:10789..14251+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTAGCGGGGAAGAAGGCGCGATCAGCGGTGGAGGTGAGACCGGCCC
CGCGAAAGGAAGCACACACGACAGTAGCAGCGGTGCCGGGGCCACCAGGA
GCGTCGGCGGCAACGCCGCCGGCGCCGCCGCGGCGGGGGCGCTTGCGGAG
TTCCGCGCAGCCGAAGAGTTGCCGGGAGAAGAAGGGGCTGAGCAGCGGGT
AGACGCCGAAGAGTGCAGGGTCACCGGGCCGTGCTTGTGGTGCGAGAAAG
ACGAACTGGGCCTGGAGTACTGCAAGAAGACGCAGCGACGGCAAGAGGTA
TGAAGAGACGGGGTCTTATTTACACGAATCCTCTTCTTCATAGGTTATTG
GCAGGAGTGGAATATCTAATGCTGAGATTGCTGAGCGGCCGCATGAACCA
TCATGAATCCTTTGGGGAACGTACCTAAATACCGCCGGTAAGTTAGAGCC
CCAGGCTGCGCTCTCATGTACCCGTTTGTTCGAGCAAAGCTCATGCGGCA
CTTGTTTGTGTCTGCTGCCGGGGCAACGGCCGATTTGCCGCGTGCTTGCT
GATGTTGGTCCGAGAGTTGTCTCTCGACATGCATGGCAAATGCTCTCGGT
GCGGCGACGGCGCGTCTTTTCCTTTGCTAGTTCGGCCGTGTCAGGGCCGA
GAGGGTCGTCGTGTGTCGCGGTACCTCTCTCTGCATGCGAGAGTAATCTC
CCGATATGAATACTCTGCATGTACGCTGTCGCTTCCGGTCCCCCGAGTGA
AGCCCTCAAATTTAGGAGTACAAAATAGTCGGGCGTGCGTCTGTTTCTTA
AGTGTCCGGCCTTGCGTAGGAGCCGTGGAGCCGTGGAGTACGAGCACGTC
GGCAATCCTGCCCCGCGCCTGGCAATGCAACCCCCGGACACGTAGGTAGC
CACCCCTCTGACTTCTGCGCACTACCGGTCCTGTACAAGTTATGATCGCC
GTGTCGAGACCAATGGACCACCTCCCTCCCTCCCTCCATCGTCTCCGCCT
GTCCCACTCTGCCTGTCTTGCCGCTGATGCTGGTCGTTCCTCATGCTCGT
CGATTCACCGATATTTTTTCTCAGGTGCGGTGTCCGGTGGAACTGGCGGG
CCAAAATATGGCCGCGGGCTCGGCAGGCGCGCCAGGCGGGGGGGTCGGCG
TTTTGCCGAGCTCAGTCAGGTACCGGCCCTGCGACTACGCAGAAGAGGAC
GACTTCCAAGGACTCTTTAATTTTTGGGTGAGTCCATATGCATGCCGCCG
AGAAAGTTTTTGGCCGCCCGTGTGTTTCCTTCCCTTTCCCGCCCCCCCAC
CTGCGTGGCGGCGTCCCGCGCTGTGGAGTTTCGTTCGTTTGATATTCCGT
TGTCGCGGTGTTGACGTGAAGCTTTTGCCACGTGCGGGTGAGACGATCGT
CGTGTACGAATTGCACATGTGTGGCTCGCTGGGTTTATGACAATGAGTGG
GCGTGTTTGAGTTCGTATACAAGTATATCCAGCCGAGTTTTTTTCGTTTC
TGCCGTTTTTCTGGCGAAACGCAAGGGCACATTTTTTTTCTAGTGAATGT
GGTTCAGGGTTGGCTTCTCTCTGTGTCGATAAGGGGGGGTTGCGGGTGTT
GCCGGCTCGGGTGAAAACCGACGCGCTGCTGTCTTGCGGGGATCTATATG
GTCCGTCCGAGACAATTTGTCCACTCACGTTTTTTGTCATAACTTTCGAA
AAAAAAAACGAATTAGACCGATTTTCAGGTATGGTAGTGATCCCCGCAGC
AAGGCGAGAAAAAAAACACTTTACAAACATTTTGGACACCTCCACACTAA
ATTCAAGTCGTTGTGTGGCCAAAAACGTTTTAAGACAGGAAAAAAAACTG
GGTTTCGGACAAATCGTTGAATATCTCACCAACCATCGTTTTTATCAACA
ATCGGGGAAAAGAACTCTGGGGAATTTCGAGAGGAATCGTTCGCCGTGGT
CAATTTTAAAATTCTATGGTTCAATTTTGCAGGAAAAAGCGAACAAGATG
GTCTCTAGAATCCAGTTTTTGGCCGATATCTCACTAACCATCGTTTTTAT
CAACAACCGGAAAAAATACCAGCCTGGGGAATTTCGAGAAGGATCGTTTG
CCGTGTTCTTTTTTTAAAACGTATGGTTGATTGTCGCAGGAAAAAGCGAA
CAAAATATTCCGGTTATCTGGAGATTACGTCGAAACGAAAAAAAAAACGC
TTTCCATAGCGAGACGCGCCTGGAGACAGGGCGTTTGCCGGTGTCTTTGA
AATTCCGAACAACCACCTGTGTCCAGAAAAAGTGTACCTTGGTGCAGGTC
GAAATTGTGGATAAATTGCCGGGGACGGACCATATGTCCCTCGACATGTA
AATATTAAAAAGCAGCCCCCTTTTGATATACTCCGTAAATCTCTTGATGC
GGTGCTCGAGGGCCGAAACATGGCAAAAGACATTCGGAGTCACCTTGTCC
CCGACCGTGTTTTGTCAAGCCACTTACTGCATAGTTCGCCGTTCCTTGCG
CTTCGGCGTGAGTCCGCCCGGCATCGTCGAAGGTATTTGTCGACAATCCC
CTACTGTGTGTATGTTTGACATTCCGCCTTTCTTTCTATTTGTTTCGCCG
CCTTCCTGCGCGTGTTTTTTTTCCCTCCGTCCTTGGCAAAACGGCAGTTG
GCGATGTTGGTGGTGGGCGCGCTGGCATGCTTCGGCATGAGGAGAAGGCA
GCAAAAGGGCGGCTCGTTATACGACCGCCGTGCGAAGTGATCAGTCCTTG
CCACCTCGCGGTTGTGCGTGGCGACATCTTGTCCGCTTTTGAAAGACATG
AATGCAATGTCTGTGGACATCACTTTCGTGCTCTTGTACCACTTTTGTAC
AGCCTACAATGGTGCCGAATGGCTCAAAGCAAGGATTCTATGTTGTGTGG
ATTGGTCTTTATAATTGGTGCAGCGAAAGGTTGTGTTTGTTTCAGAGTTG
TAAGAGGGGCGGGCCTCTTCTAGGTCCCTGCAACAAGGCGACGTTCTATT
CGGTCTGTTTTCGGCGTGGAATGCAAACCGAGTACAAAACTCTACTGTAG
CTCACTCTCGACGACGAAACTAGTAACGAGGGGAAATGTTTTGTGTACGA
GAGAGCAGGGGTGTACTTGCACGCGCCCAAGACACCCGTGTTGTAGGATA
CCCCGGCCGGGATCCGAACCCTGGCTGGCGGGCGCGATGACGTCACTCTC
ACGGGTCAATCAAGGGCGGCGCCCCCAGAACCCGTGAGCAGAGTCGATTT
TTCCTTTTTTGGCCTGCACATTGTACGAGTGGCCACTATTGTATGTGGGG
CCTTTTCGTGCGACTTTCCCCGACGTCGAATGAACGTTGCTGGCACAAAA
ATACATCGGGGGTTAACAACAATGAGGGTACATTGATTGCTGCCTGTCCA
TTTGTTTCTGGCTTTTTGGAGACAACAATAAAGGGGCCAATAATAACCAA
TAACCGAACTCTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig618:10789..14251+

>mRNA_L-elsbetiae_contig618.14759.1 ID=mRNA_L-elsbetiae_contig618.14759.1|Name=mRNA_L-elsbetiae_contig618.14759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig618:10789..14251+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTAGCGGGGAAGAAGGCGCGATCAGCGGTGGAGGTGAGACCGGCCC
CGCGAAAGGAAGCACACACGACAGTAGCAGCGGTGCCGGGGCCACCAGGA
GCGTCGGCGGCAACGCCGCCGGCGCCGCCGCGGCGGGGGCGCTTGCGGAG
TTCCGCGCAGCCGAAGAGTTGCCGGGAGAAGAAGGGGCTGAGCAGCGGGT
AGACGCCGAAGAGTGCAGGGTCACCGGGCCGTGCTTGTGGTGCGAGAAAG
ACGAACTGGGCCTGGAGTACTGCAAGAAGACGCAGCGACGGCAAGAGTCC
GCTAGCGGGGAAGAAGGCGCGATCAGCGGTGGAGGTGAGACCGGCCCCGC
GAAAGGAAGCACACACGACAGTAGCAGCGGTGCCGGGGCCACCAGGAGCG
TCGGCGGCAACGCCGCCGGCGCCGCCGCGGCGGGGGCGCTTGCGGAGTTC
CGCGCAGCCGAAGAGTTGCCGGGAGAAGAAGGGGCTGAGCAGCGGGTAGA
CGCCGAAGAGTGCAGGGTCACCGGGCCGTGCTTGTGGTGCGAGAAAGACG
AACTGGGCCTGGAGTACTGCAAGAAGACGCAGCGACGGCAAGAGGTGCGG
TGTCCGGTGGAACTGGCGGGCCAAAATATGGCCGCGGGCTCGGCAGGCGC
GCCAGGCGGGGGGGTCGGCGTTTTGCCGAGCTCAGTCAGGTACCGGCCCT
GCGACTACGCAGAAGAGGACGACTTCCAAGGACTCTTTAATTTTTGGGTG
CGGTGTCCGGTGGAACTGGCGGGCCAAAATATGGCCGCGGGCTCGGCAGG
CGCGCCAGGCGGGGGGGTCGGCGTTTTGCCGAGCTCAGTCAGGTACCGGC
CCTGCGACTACGCAGAAGAGGACGACTTCCAAGGACTCTTTAATTTTTGG
TTGGCGATGTTGGTGGTGGGCGCGCTGGCATGCTTCGGCATGAGGAGAAG
GCAGCAAAAGGGCGGCTCGTTATACGACCGCCGTGCGAAGTGATTGGCGA
TGTTGGTGGTGGGCGCGCTGGCATGCTTCGGCATGAGGAGAAGGCAGCAA
AAGGGCGGCTCGTTATACGACCGCCGTGCGAAGTGA
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