mRNA_L-elsbetiae_contig6147.14715.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6147.14715.1
Unique NamemRNA_L-elsbetiae_contig6147.14715.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6147.14715.1 vs. uniprot
Match: A0A6H5KEV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEV5_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 1.930e-31
Identity = 88/145 (60.69%), Postives = 99/145 (68.28%), Query Frame = 1 
Query:    1 GVNDLLVVLPHGRSVADVLDKVRKRLPPDLSPALAARRAEQDTARTDTDNVDKSRKXXXXXYHHGDDCGAGRQQDSSRRRSRADLEAFRRDMLRAALGAGLAEALALGAAGRGAPASAARVAGTDENNALRVAGLASSEAARVLD 435
            G++D+LVVLP GRSVADVLDKV  RLP DL+PALAA+R       TD D  + S+K       H D  G   QQ        + LEA+RRDMLRAALG GLAEALALG   RGAPA+AARVAGTDE+NA RVA LAS EAA  LD
Sbjct:  273 GIDDMLVVLPQGRSVADVLDKVEARLPKDLTPALAAQR-------TDDDATNNSKKRPRRHRKHDD--GERPQQ-----LPESQLEAYRRDMLRAALGCGLAEALALGPK-RGAPAAAARVAGTDEDNARRVAILASGEAATALD 402
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6147.14715.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KEV5_9PHAE1.930e-3160.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6147contigL-elsbetiae_contig6147:1516..2863 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size459
Cds size456
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816673.0087168-CDS-L-elsbetiae_contig6147:1515..15781622816673.0087168-CDS-L-elsbetiae_contig6147:1515..1578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 1516..1578 +
1691683729.4814763-CDS-L-elsbetiae_contig6147:1515..15781691683729.4814763-CDS-L-elsbetiae_contig6147:1515..1578Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 1516..1578 +
1622816673.024064-CDS-L-elsbetiae_contig6147:2468..28611622816673.024064-CDS-L-elsbetiae_contig6147:2468..2861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 2469..2861 +
1691683729.4934132-CDS-L-elsbetiae_contig6147:2468..28611691683729.4934132-CDS-L-elsbetiae_contig6147:2468..2861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6147 2469..2861 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6147.14715.1prot_L-elsbetiae_contig6147.14715.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6147 1516..2861 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6147.14715.1

>prot_L-elsbetiae_contig6147.14715.1 ID=prot_L-elsbetiae_contig6147.14715.1|Name=mRNA_L-elsbetiae_contig6147.14715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=152bp
GVNDLLVVLPHGRSVADVLDKVRKRLPPDLSPALAARRAEQDTARTDTDN
VDKSRKRKRHRYHHGDDCGAGRQQDSSRRRSRADLEAFRRDMLRAALGAG
LAEALALGAAGRGAPASAARVAGTDENNALRVAGLASSEAARVLDVRLEE
AV
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mRNA from alignment at L-elsbetiae_contig6147:1516..2863+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6147.14715.1 ID=mRNA_L-elsbetiae_contig6147.14715.1|Name=mRNA_L-elsbetiae_contig6147.14715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1348bp|location=Sequence derived from alignment at L-elsbetiae_contig6147:1516..2863+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGAACGACCTGCTTGTGGTTCTTCCGCACGGCCGCAGCGTCGCTGA
CGTGCTTGACAAGGTGGGGCTGTGTAGCAGGCGGGTGGGTGCATTCTCGT
GCGTGTTAAAAAAAAAAAATGTTTGATGAGGGAAAGTGGAGTGTTGTTAT
ACAATACAGCTGTCTTTTCTTTTCTTTAAAAAAAAAAAAAAAAAAAATGC
CTGTCTTTTTCTTGCCGACTTGCGGGTGTCCGTTATCTCGTTTGCTTGCG
AGGAAGTGGACATATATGTTATCTGCGTACGTACCGTGTGCAGCAGACAT
ATTGGTCTGAGCTGTTCTTCCGCGGTTTACCGCTCGTTCCGCGCACCGCG
CTGGCGGCGGGAAAGGGGAGGGCGCCGGGATGAGCAGAGAGCCAGACACT
TCAAACACACACGGAAAATAGAAAGACTACATATATATATGTATGTGTGG
CTGCACGAAGTATCGCCAGAGCAAGACCCGCCCCTCAAGGAGTTGCCACC
CAACCTCCAGTATCCTTTACACCACCCACCGCCCCATCCCCGCGCCACCC
GCGCGTATCCATATCCATATCAACCGTATTCATGCGAGTCACCGCACCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCGGGTTTCC
AATTCCATCCCAACCGTTTTCAAGGGGGTCCCCCCCCCCCCCCCCCCCCC
CCCCCCGTACCGATTTCCAAAGCTCGACTACCCCTTCTTCGCGAAGAGGG
TGCCAACACTAAACGGCACGTTTTTGGAAAGCTCTCGACGTGATCGTCCC
AATGCCCCCCCCCCCTTTCGGTGCCGGCGCCCCCCCTTCGTCAAGGCGTA
GTCTTTGAAATAATATATGGGGGGGTTTGCGATGACTCGGCATGATGACG
GCATCAACGCAACGCAAACGCGCGCGCGCGCGCACCTCTCTCTCTCTCTC
CAGGTAAGGAAACGACTACCGCCAGACCTCAGCCCCGCGCTCGCGGCACG
TCGGGCGGAACAAGACACAGCCCGAACCGACACCGACAACGTCGACAAGA
GCCGAAAACGAAAGCGGCACCGCTACCACCATGGCGACGACTGCGGGGCC
GGCCGCCAGCAAGACAGCAGTCGCCGCCGAAGCCGCGCCGACCTCGAGGC
CTTCCGCAGGGACATGCTCCGGGCCGCCCTCGGCGCTGGCCTCGCGGAGG
CGCTCGCCCTGGGCGCCGCCGGTCGGGGCGCCCCGGCGTCCGCCGCGCGC
GTGGCCGGGACCGACGAGAACAACGCCCTCCGGGTGGCCGGCCTGGCCTC
GAGCGAGGCGGCGAGGGTACTGGACGTGAGATTAGAAGAGGCGGTGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6147:1516..2863+

>mRNA_L-elsbetiae_contig6147.14715.1 ID=mRNA_L-elsbetiae_contig6147.14715.1|Name=mRNA_L-elsbetiae_contig6147.14715.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig6147:1516..2863+ (Laminarionema elsbetiae ELsaHSoW15)
GGGGTGAACGACCTGCTTGTGGTTCTTCCGCACGGCCGCAGCGTCGCTGA
CGTGCTTGACAAGGGGGTGAACGACCTGCTTGTGGTTCTTCCGCACGGCC
GCAGCGTCGCTGACGTGCTTGACAAGGTAAGGAAACGACTACCGCCAGAC
CTCAGCCCCGCGCTCGCGGCACGTCGGGCGGAACAAGACACAGCCCGAAC
CGACACCGACAACGTCGACAAGAGCCGAAAACGAAAGCGGCACCGCTACC
ACCATGGCGACGACTGCGGGGCCGGCCGCCAGCAAGACAGCAGTCGCCGC
CGAAGCCGCGCCGACCTCGAGGCCTTCCGCAGGGACATGCTCCGGGCCGC
CCTCGGCGCTGGCCTCGCGGAGGCGCTCGCCCTGGGCGCCGCCGGTCGGG
GCGCCCCGGCGTCCGCCGCGCGCGTGGCCGGGACCGACGAGAACAACGCC
CTCCGGGTGGCCGGCCTGGCCTCGAGCGAGGCGGCGAGGGTACTGGACGT
GAGATTAGAAGAGGCGGTGGTAAGGAAACGACTACCGCCAGACCTCAGCC
CCGCGCTCGCGGCACGTCGGGCGGAACAAGACACAGCCCGAACCGACACC
GACAACGTCGACAAGAGCCGAAAACGAAAGCGGCACCGCTACCACCATGG
CGACGACTGCGGGGCCGGCCGCCAGCAAGACAGCAGTCGCCGCCGAAGCC
GCGCCGACCTCGAGGCCTTCCGCAGGGACATGCTCCGGGCCGCCCTCGGC
GCTGGCCTCGCGGAGGCGCTCGCCCTGGGCGCCGCCGGTCGGGGCGCCCC
GGCGTCCGCCGCGCGCGTGGCCGGGACCGACGAGAACAACGCCCTCCGGG
TGGCCGGCCTGGCCTCGAGCGAGGCGGCGAGGGTACTGGACGTGAGATTA
GAAGAGGCGGTG
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