mRNA_L-elsbetiae_contig6139.14706.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6139.14706.1
Unique NamemRNA_L-elsbetiae_contig6139.14706.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: D7FRH9_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRH9_ECTSI)

HSP 1 Score: 226 bits (577), Expect = 1.700e-73
Identity = 105/110 (95.45%), Postives = 109/110 (99.09%), Query Frame = 1 
Query:  139 DVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETGTQ 468
            D+WEH+KFLGKKCTRKEVTDIVWEVDENLDG++DWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFG GMRETGTQ
Sbjct:   15 DIWEHMKFLGKKCTRKEVTDIVWEVDENLDGLVDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGEGMRETGTQ 124
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A7S2UTN0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UTN0_9STRA)

HSP 1 Score: 188 bits (478), Expect = 8.090e-57
Identity = 90/138 (65.22%), Postives = 112/138 (81.16%), Query Frame = 1 
Query:   55 NKINEEIQALEQEIARLENNPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETGTQ 468
            N++  EI  +E +I  L ++PDKKI+A D+ E L+FLGKK T+KEV D++WEVDENLDG +DW+E++LMF RNI D TGLEP+KLYNMVQFM+YD DN   VSVD+TMNMLYARYGR++ME KL+ELFG  MRE G Q
Sbjct:  107 NQLTAEINGIESQIEALRSDPDKKIRAPDLMEALRFLGKKVTKKEVADMIWEVDENLDGCVDWEEYRLMFQRNIFDRTGLEPSKLYNMVQFMIYDHDNKGLVSVDQTMNMLYARYGRSRMEQKLRELFGTDMRENGKQ 244
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A836CM15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM15_9STRA)

HSP 1 Score: 173 bits (439), Expect = 4.910e-51
Identity = 91/161 (56.52%), Postives = 113/161 (70.19%), Query Frame = 1 
Query:   70 EIQALEQEIARLEN-NPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNM---------------------------VQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETGTQ 468
            EI AL+Q++  LE+ +  +KIKA+DV + +  LG++CT+KEV D++WEVDENLDG +DW+EF+LMF RN+ND TGLEP+KLYNM                           VQFM+YDV+ N  VSVDETMNMLYARYGR +ME KLKELFG  MRETGTQ
Sbjct:   60 EIAALQQQLRALESPSGSQKIKAIDVSQSMAVLGRRCTKKEVMDMIWEVDENLDGCVDWEEFRLMFNRNVNDRTGLEPSKLYNMSFHAAKPRKKHAGLDDKPSHLLCLQAQVQFMVYDVNGNGLVSVDETMNMLYARYGRARMEVKLKELFGEEMRETGTQ 220
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: F0Y9Y6_AURAN (EF-hand domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9Y6_AURAN)

HSP 1 Score: 164 bits (415), Expect = 1.810e-48
Identity = 82/137 (59.85%), Postives = 105/137 (76.64%), Query Frame = 1 
Query:   58 KINEEIQALEQEIARLENNPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETGTQ 468
            K+++EI+ L+ ++  +E   D  I   D+ E LK LGKK  RK+V D++WEVDE+LD  ++W+E  LMF RNI D TGLEP++L+N+VQFM++D D N  VSVDETMNMLYARYGR +MEAKLKELFG  MRETGTQ
Sbjct:    8 KLDDEIEELQIKLRTIEAESDGLISVQDLMEALKTLGKKTPRKDVEDMIWEVDEDLDCCVNWEEMLLMFQRNIRDRTGLEPSQLFNVVQFMIFDQDENGLVSVDETMNMLYARYGRVRMEAKLKELFGDDMRETGTQ 144
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A812T3T1_SYMMI (Cam1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812T3T1_SYMMI)

HSP 1 Score: 162 bits (410), Expect = 1.200e-47
Identity = 78/133 (58.65%), Postives = 99/133 (74.44%), Query Frame = 1 
Query:   70 EIQALEQEIARLENNPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETGTQ 468
            +I  + Q    LE NPD+KI   D+ E L+ L  K  +KEV +++WEVD++LDG IDW EF+LMF RNI D+ GLEP+K++N+ QF++YD + N  VSVDETMNMLYARYGRTKME KLKELFG  M ETG +
Sbjct:   22 QIDEMNQTYTELETNPDRKISCNDILEMLRRLKAKTNKKEVQEMIWEVDDDLDGCIDWGEFRLMFTRNIMDNCGLEPSKMFNLTQFLIYDHNCNGRVSVDETMNMLYARYGRTKMETKLKELFGENMHETGRE 154
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A6S9HP31_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9HP31_HETAK)

HSP 1 Score: 164 bits (416), Expect = 1.470e-47
Identity = 78/143 (54.55%), Postives = 107/143 (74.83%), Query Frame = 1 
Query:   61 INEEIQALEQEIARLENNP----DKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETGTQASS 477
            ++ E++    E+A LE  P    ++KI+  D+ E  +FLG+  TRK+V D++WEVDENLDG +DW+EF+LMF RN+ D TGLEPA+LY+M QFM+YD  N   V+VD+TM+MLYARYG+ KMEAKLK LFG  M+E+GT+  +
Sbjct:  101 LSAEVEQHRAELAALERPPAGAPEQKIRPADLLEAARFLGRPATRKDVQDVIWEVDENLDGAVDWEEFRLMFERNVGDRTGLEPAQLYHMAQFMMYDARNTGRVTVDQTMSMLYARYGKAKMEAKLKILFGRDMKESGTEGGA 243
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A813C532_9DINO (TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813C532_9DINO)

HSP 1 Score: 155 bits (391), Expect = 5.490e-44
Identity = 72/128 (56.25%), Postives = 101/128 (78.91%), Query Frame = 1 
Query:   58 KINEEIQALEQEIARLENNPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFG 441
            ++ EEI  +E +I  +++  DKK+K  D+ E L FLGK+ ++KE+ D++WEVDENLDG +DW+EF+LMF RNI D TG EP +L+N+VQFM+YDVD +  VSVDETM+MLYARYG+ ++E ++K LFG
Sbjct:  102 RLEEEIGDIEAQINTIKSKQDKKVKPKDLQEALAFLGKRSSKKEIEDMIWEVDENLDGCVDWEEFQLMFQRNIKDTTGKEPFQLFNVVQFMMYDVDFSGEVSVDETMHMLYARYGKARLEREMKALFG 229
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A5A8DI08_CAFRO (EF-hand domain-containing protein n=2 Tax=Sar TaxID=2698737 RepID=A0A5A8DI08_CAFRO)

HSP 1 Score: 154 bits (388), Expect = 1.250e-43
Identity = 74/135 (54.81%), Postives = 101/135 (74.81%), Query Frame = 1 
Query:   58 KINEEIQALEQEIARLENNPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETG 462
            KI++E   + Q I ++E   +KKIK  D+ E L  LGKK T+KE+ D++WEVDENLDG +DW+EF+LMF RNI D TGLEP +L+N+VQFM+YD D    VSVDETM+MLY+RYGR  ++++++ LFG  +  TG
Sbjct:   86 KIDDECADITQRIEKIEAKEEKKIKPRDLLEALGKLGKKATKKEIEDMIWEVDENLDGCVDWEEFQLMFHRNIKDTTGLEPHQLFNVVQFMMYDKDCGGQVSVDETMHMLYSRYGREGLDSEMRNLFGDSLSATG 220
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A2R5GQD3_9STRA (Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GQD3_9STRA)

HSP 1 Score: 149 bits (377), Expect = 3.560e-42
Identity = 67/127 (52.76%), Postives = 102/127 (80.31%), Query Frame = 1 
Query:   61 INEEIQALEQEIARLENNPDKKIKAVDVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFG 441
            + +EI ALE+E+A L+++P ++I+  D+ E LK LGK  ++KE+ +++WEVDE+LDG++DW+EFKL + RN+ D TGLEP +L+N++QFM+YD D +  V+VDETM+MLY RYGR ++E ++K LFG
Sbjct:   81 LRQEIAALEKEVAVLDSDPQRRIRPADLAECLKTLGKPNSKKEIEEMIWEVDESLDGVVDWEEFKLTYQRNLADTTGLEPCQLFNVIQFMIYDKDGSGKVTVDETMHMLYTRYGRDRLEGQMKLLFG 207
[Close]
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Match: A0A7R9ZF54_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZF54_9STRA)

HSP 1 Score: 142 bits (359), Expect = 1.010e-40
Identity = 66/108 (61.11%), Postives = 87/108 (80.56%), Query Frame = 1 
Query:  139 DVWEHLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEPAKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGMRETG 462
            D+ + LK LGK+ T+KEV D++WEVDENLDG +DW+EF LMF RNI D TGLEP +L+N+VQFM+YD  N+  VSVDETM+MLYARYG+ ++EA++K LFG  ++  G
Sbjct:    2 DLMDALKALGKRSTKKEVEDMIWEVDENLDGCVDWEEFHLMFQRNIKDKTGLEPFQLFNVVQFMMYDRTNSGAVSVDETMHMLYARYGKDRLEAEMKALFGDDLKADG 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6139.14706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FRH9_ECTSI1.700e-7395.45EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2UTN0_9STRA8.090e-5765.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A836CM15_9STRA4.910e-5156.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
F0Y9Y6_AURAN1.810e-4859.85EF-hand domain-containing protein n=1 Tax=Aureococ... [more]
A0A812T3T1_SYMMI1.200e-4758.65Cam1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
A0A6S9HP31_HETAK1.470e-4754.55Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A813C532_9DINO5.490e-4456.25TNNC2 protein n=1 Tax=Symbiodinium sp. KB8 TaxID=2... [more]
A0A5A8DI08_CAFRO1.250e-4354.81EF-hand domain-containing protein n=2 Tax=Sar TaxI... [more]
A0A2R5GQD3_9STRA3.560e-4252.76Calmodulin n=1 Tax=Hondaea fermentalgiana TaxID=23... [more]
A0A7R9ZF54_9STRA1.010e-4061.11Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6139contigL-elsbetiae_contig6139:6994..9534 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score228.4
Seed ortholog evalue2.4e-57
Seed eggNOG ortholog2880.D7FRH9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.EF-hand domain pair
EggNOG OGs2CS8I@1,2RAUZ@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size490
Cds size489
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6139.14706.1prot_L-elsbetiae_contig6139.14706.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6139 6994..9534 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.973147-CDS-L-elsbetiae_contig6139:6993..70871622816671.973147-CDS-L-elsbetiae_contig6139:6993..7087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 6994..7087 -
1691683728.7876177-CDS-L-elsbetiae_contig6139:6993..70871691683728.7876177-CDS-L-elsbetiae_contig6139:6993..7087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 6994..7087 -
1622816671.9885042-CDS-L-elsbetiae_contig6139:7529..76821622816671.9885042-CDS-L-elsbetiae_contig6139:7529..7682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 7530..7682 -
1691683728.800936-CDS-L-elsbetiae_contig6139:7529..76821691683728.800936-CDS-L-elsbetiae_contig6139:7529..7682Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 7530..7682 -
1622816672.0013924-CDS-L-elsbetiae_contig6139:8121..82251622816672.0013924-CDS-L-elsbetiae_contig6139:8121..8225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 8122..8225 -
1691683728.8103888-CDS-L-elsbetiae_contig6139:8121..82251691683728.8103888-CDS-L-elsbetiae_contig6139:8121..8225Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 8122..8225 -
1622816672.0191014-CDS-L-elsbetiae_contig6139:8988..90781622816672.0191014-CDS-L-elsbetiae_contig6139:8988..9078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 8989..9078 -
1691683728.8194818-CDS-L-elsbetiae_contig6139:8988..90781691683728.8194818-CDS-L-elsbetiae_contig6139:8988..9078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 8989..9078 -
1622816672.033584-CDS-L-elsbetiae_contig6139:9486..95341622816672.033584-CDS-L-elsbetiae_contig6139:9486..9534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 9487..9534 -
1691683728.828255-CDS-L-elsbetiae_contig6139:9486..95341691683728.828255-CDS-L-elsbetiae_contig6139:9486..9534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6139 9487..9534 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6139.14706.1

>prot_L-elsbetiae_contig6139.14706.1 ID=prot_L-elsbetiae_contig6139.14706.1|Name=mRNA_L-elsbetiae_contig6139.14706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
SKQAKVAAHDANVKAQQENKINEEIQALEQEIARLENNPDKKIKAVDVWE
HLKFLGKKCTRKEVTDIVWEVDENLDGMIDWDEFKLMFFRNINDHTGLEP
AKLYNMVQFMLYDVDNNVNVSVDETMNMLYARYGRTKMEAKLKELFGAGM
RETGTQASSTNL*
back to top

mRNA from alignment at L-elsbetiae_contig6139:6994..9534-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6139.14706.1 ID=mRNA_L-elsbetiae_contig6139.14706.1|Name=mRNA_L-elsbetiae_contig6139.14706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2541bp|location=Sequence derived from alignment at L-elsbetiae_contig6139:6994..9534- (Laminarionema elsbetiae ELsaHSoW15)
TCCAAACAGGCCAAGGTCGCAGCACACGATGCGAATGTCAAGGCACAGGT
TGGAAAACACTAATCGTTTCCCTGCTATTTACCAAAGCACTTTATTCATG
TCTTCACGTACTTCGTATATTCGCATCTCCAGTCGAAGTTGTTTCCAATG
GGTGCTGTTGAGTGTTTGGCTGCTTGTGTGACCACGGAAAGTTGTCACAC
GATTGAGGCAGCACGTAAAAAGGAGATATCGTGTTTCAGAAGTCGAAGCT
GGCATCTTCTCATACCAATGCTGAAAGTTGCTGTTGCCTGAAATTCTCGC
GTGGTAAGCAACGGCAGGTTGAAAATGTGGCACACCCCATCACCATATTC
CCCCATGTCTCCAGAGGAGATAATTCTCGACAGCAAGACATGCGATCTTT
CGCTTTTGCTGTCCGCGGTTCGATCACCTCTTTTGTGTGCACCTTCGGTT
TTTCAGCAAGAAAATAAAATAAACGAGGAAATCCAAGCTCTGGAGCAAGA
AATAGCTCGACTTGAGAACAATCCAGACAAGAAGATCAAAGCGGTGGTGA
GTGGGTGGATTTGTTGTTCTTGTTGTGCTTTCAATACCACAGTAGTTCGG
CAGCACACCTGACGTGGAAGCAGTTCCTTTACCTACGTCACGCGGATTAA
GTAGGAGAATACTTTCATACTTCCTCCAACACATAAGTAAAGTGAGTTAT
GTTTACACGGGCCCTTAACCATGTCCGATGCCAAACGTGATGGTATTTTT
GAGATCCTCGTCGTTTTTTGAGTCTTTGTTTTTTTTCGTGTGCAGCCTCC
TGCACATGTCAGCGGCCGAAAAAAATCCAGTCGGCCCAAAAATGCCCTTT
TTTTGCACTTTTTCCGGAACAGAGAAGAAAAATGAAAATCTGAAAAATGA
CAAAACAAAATGGCTCAAAAGCGCCAAATTCGAGTTTTTTTCCGACTGGA
TGCTTTTGGGCAATACCCACGCTTTGTTTGAAAGCATATCGTCATGTTGT
AGATTGTTTTTCATGGAAACAGGCAAATTCGCCATATTTCGGCCGAAAAG
CGTAAGAATTGGCCGAAATCGGCCTAAATTTGGTCGAAATTGACCCACAA
CTTCTCAACAATTACGACCCGTTTTATTTTAATTTTTTTCTTTGAGCATC
TCTGTAACTGTATATATCTTTCTAAAGAACCTAACTATAGCATTACACAC
TATTCCGTTCAAAATATATGATCTGTGCCTCATAACTCACTTTACTTATG
TGTTGGAGGAAGTATGTAGCATGCTAAAACCATGGGCGTCGGCGACTTGT
GCTCGGCAGGACGTGTGGGAGCACTTGAAGTTCTTGGGCAAGAAGTGCAC
CCGGAAGGAAGTGACCGACATAGTCTGGGAAGTAGACGAAAATCTCGACG
GCATGATCGACTGGTGAGTTTCACCTGTTCTTGCGGCCGAGGGCATGGTG
CGGTGGTTTTGGAGATGTGGTAAAGATTTAAGTACTTCGTGCATGTTTTG
GTTGGGTGTGGCGATGAGCGTTGAAAGCGTGAGGCCAACAAAGTGGCTTA
CATGTGGAGTGGGATGGCGCCGTACGCTATATCAAACGAGCGGAGAGGTA
GTTCTGGATTTGGCTATTCTCTGTAGCGCCTCACGGAAGACGTCTTGCTG
GTCGGGAAAGTACTTCCGCGGAAGAGGGGGGCACTGGGTATATTAAGAGC
AGTTCTCATATGGAGAGCAATTGATCGACCACAGGCAACATCAACAGGGC
ACTACAAGCTCTGTCTATTTTGCAGTATCACTCTGCCGCTATACATATTT
GCCAAACACTTTTTCTGCCTAAAAAATGTCTTCGATTCTTCAAACCGGAA
AGGGACGAGTTCAAGCTGATGTTCTTCCGCAACATCAACGATCACACGGG
TCTCGAGCCGGCGAAGTTGTACAACATGGTGCAGTTCATGCTGTATGATG
TCGACAACAACGTCAACGTTTCCGTAGACGAGACCATGAACATGCTGTAC
GCCAGGCGAGTGAGAGATGTACCGTGCAAACCGTTTCAGCTCGGACGAAG
AGAACTATCTACACTTACGACACCAAAACACATGTTCCTAAAGACGCGTA
GGTAGTCTATCTCACGGCACTTGCTATTTTTTCCTTTGGCGAGTCTGTTT
TTCCAGCAGGAGCCCCCATATCAGGGTAAATCACTGGCCGCCCGATGGCC
AAATAGCGCTCTTCAAGTGAAGGCGATACATGCCAACGGCTATCCCAACG
GCATCAATTGGTTTGCCGTATCACAGACAGAAAAGCCGATGTGTTTGCTT
CTGGCATTTGTGGTCAACAGTTAGATTCCTTGATAAGCTGATGTTGACAG
CATCATTAACTCCTCTACAAACAACGGTAACTAGAACGTCGCACGGGTCT
GATAGTTTTCCACCCGCGGTACCGTTTTTTTTCCCGGCAAATTACAGATA
CGGCCGGACAAAAATGGAAGCGAAACTCAAAGAGCTCTTCGGGGCGGGCA
TGCGAGAGACAGGGACACAGGCGAGCAGTACAAATCTGTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6139:6994..9534-

>mRNA_L-elsbetiae_contig6139.14706.1 ID=mRNA_L-elsbetiae_contig6139.14706.1|Name=mRNA_L-elsbetiae_contig6139.14706.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig6139:6994..9534- (Laminarionema elsbetiae ELsaHSoW15)
TCCAAACAGGCCAAGGTCGCAGCACACGATGCGAATGTCAAGGCACAGTC
CAAACAGGCCAAGGTCGCAGCACACGATGCGAATGTCAAGGCACAGCAAG
AAAATAAAATAAACGAGGAAATCCAAGCTCTGGAGCAAGAAATAGCTCGA
CTTGAGAACAATCCAGACAAGAAGATCAAAGCGGTGCAAGAAAATAAAAT
AAACGAGGAAATCCAAGCTCTGGAGCAAGAAATAGCTCGACTTGAGAACA
ATCCAGACAAGAAGATCAAAGCGGTGGACGTGTGGGAGCACTTGAAGTTC
TTGGGCAAGAAGTGCACCCGGAAGGAAGTGACCGACATAGTCTGGGAAGT
AGACGAAAATCTCGACGGCATGATCGACTGGACGTGTGGGAGCACTTGAA
GTTCTTGGGCAAGAAGTGCACCCGGAAGGAAGTGACCGACATAGTCTGGG
AAGTAGACGAAAATCTCGACGGCATGATCGACTGGGACGAGTTCAAGCTG
ATGTTCTTCCGCAACATCAACGATCACACGGGTCTCGAGCCGGCGAAGTT
GTACAACATGGTGCAGTTCATGCTGTATGATGTCGACAACAACGTCAACG
TTTCCGTAGACGAGACCATGAACATGCTGTACGCCAGGGACGAGTTCAAG
CTGATGTTCTTCCGCAACATCAACGATCACACGGGTCTCGAGCCGGCGAA
GTTGTACAACATGGTGCAGTTCATGCTGTATGATGTCGACAACAACGTCA
ACGTTTCCGTAGACGAGACCATGAACATGCTGTACGCCAGATACGGCCGG
ACAAAAATGGAAGCGAAACTCAAAGAGCTCTTCGGGGCGGGCATGCGAGA
GACAGGGACACAGGCGAGCAGTACAAATCTGTGAATACGGCCGGACAAAA
ATGGAAGCGAAACTCAAAGAGCTCTTCGGGGCGGGCATGCGAGAGACAGG
GACACAGGCGAGCAGTACAAATCTGTGA
back to top