mRNA_L-elsbetiae_contig6137.14704.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6137.14704.1
Unique NamemRNA_L-elsbetiae_contig6137.14704.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: D7FTC8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTC8_ECTSI)

HSP 1 Score: 245 bits (625), Expect = 4.360e-75
Identity = 133/180 (73.89%), Postives = 149/180 (82.78%), Query Frame = 2
Query:  584 KKAPSSQS--TKRPRSPAKYQGSPKSRTAPSRMSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRMEVLKGQIDARDDAKAGTASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMPEKES 1117
            K APS+ +  TK+ RSP+K    P SRTAPSR S+RL+ +  DP +LVALPGTW  SLA AT+KPG  P SFRHDYG EL+ EEAE+RMEVLKG IDARD+AKAGTASY HCLHRVRTMSD  LARRVRTIERARGA+AKEKMLVFS VL A+GKTDL E+AEAALDRLVRG+PMPE ES
Sbjct:   52 KTAPSTAAAATKK-RSPSKRPRDPASRTAPSRTSKRLRSQAADPEELVALPGTWTSSLAGATTKPGGAPSSFRHDYGPELDPEEAEERMEVLKGHIDARDEAKAGTASYNHCLHRVRTMSDVSLARRVRTIERARGAQAKEKMLVFSRVLTAKGKTDLAEVAEAALDRLVRGLPMPEMES 230          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A7S2WS01_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS01_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.330e-9
Identity = 58/175 (33.14%), Postives = 82/175 (46.86%), Query Frame = 2
Query:  584 KKAPSSQSTKRPRSPAKYQGSPKSRTAPSRMSRRLKGEP----VDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRM---EVLKGQIDARDDAKAGTASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLV 1087
            +K+ +S S  + +S  +    P     P R S RL+G+     VD H    L G      +T  +                L+A E +  +   E L+     +  +  GTASYQH LHRVRTM +  LARR++ IERA G  A  KM +F+ VL   G  +L   A A+L RL+
Sbjct:   37 RKSSASSSGPKRKSKKRPAADPDHAPGPRRRSSRLQGQSPTSVVDGHAEEVLSGGEERGRSTMEAP---------------LHASEEDHALAEAEHLRWAGKQKKASVVGTASYQHTLHRVRTMDEAALARRIKAIERAAGQHAVVKMRLFARVLCLEGHDELASDATASLQRLI 196          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A7R9UAY5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAY5_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.950e-9
Identity = 53/162 (32.72%), Postives = 80/162 (49.38%), Query Frame = 2
Query:  650 KSRTAPSRMSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRMEVLKGQIDARDDAKAG---------TASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMPE 1108
            +++T P R SRRL+G+  +           +G    A    G+   +   +  +E   +   +R   L+    A + A+AG         TASY+HCL RVR+M++ +L  RV+ IERA G     KM +F  VL+  G  +L E+A  AL+RL    P PE
Sbjct:   74 RAQTQPKRSSRRLQGKGAE----------LVGLEKEAPEGAGQFDSTVSKEEEVEEEVDPEARRTAKLRA---ANEVARAGGDVAAMENPTASYEHCLMRVRSMTEKRLKTRVKVIERAAGRHCVVKMAIFVMVLKDEGMEELAELANDALERLKGLQPPPE 222          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A8J5XV63_DIALT (Uncharacterized protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XV63_DIALT)

HSP 1 Score: 66.6 bits (161), Expect = 7.180e-9
Identity = 55/169 (32.54%), Postives = 79/169 (46.75%), Query Frame = 2
Query:  620 RSPAKYQGSPKSRTAPSRMSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRT---PPSFRHDYG---LELNAEEAEQRMEVLKGQIDARDDAKAGTASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMPE 1108
            R+ A  Q + K R + ++      G+  + H         +  LA+A      T   PP  R       ++   E    R + L+     R  +  G+ASY+H LHRV TMS+ QL+RR+  IERA G  A  KM +F+ VL   G   L E A AA  RLV  + +P+
Sbjct:   39 RNAADGQRTSKKRASKTQAHAANLGDSGERHREAVRRSQRLADLASAAPLDACTEIDPPGARRKRAAGDIDCTGEHKAARDDHLRWAGSQRRASVVGSASYEHTLHRVMTMSEAQLSRRMNAIERACGQHAVVKMRLFASVLALEGYAHLAEEANAAHQRLVEKLGLPQ 207          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A7S0D6P6_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D6P6_MICPS)

HSP 1 Score: 67.0 bits (162), Expect = 7.810e-9
Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  890 GTASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMPEKE 1114
            GTASYQH L RVRTMSD  LA R++ IERA+G  A  KM +F+ VL   G   L + A AAL RL+  +  P+++
Sbjct:  164 GTASYQHTLMRVRTMSDSGLANRIKAIERAKGKHAVVKMRLFARVLFLEGNESLADDATAALRRLIEELGDPDED 238          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: B7GD44_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7GD44_PHATC)

HSP 1 Score: 65.5 bits (158), Expect = 2.620e-8
Identity = 55/149 (36.91%), Postives = 75/149 (50.34%), Query Frame = 2
Query:  665 PSRMSRRLKG-EPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRMEVLKGQIDARDDAKAG-TASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMP 1105
            P R S RLKG EP      +    T I S + +T +        R    +E   +E  Q+  ++  Q+     AK   TA+Y+HCL RVRTM++  LA RV+ IERA G     KM +F   L+  GK DL  +A  AL+RL   +P P
Sbjct:  103 PYRSSMRLKGLEPDGGTANITSELTLIKSQSVSTIEVKE-----RRRILIEECRKER-QKAALIFAQLGIAQAAKENPTATYEHCLMRVRTMTEKALANRVKAIERAAGKHCVVKMAIFKSCLQDEGKWDLAALARDALERLKAMLPPP 245          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A7S1B9Z9_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B9Z9_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.710e-8
Identity = 55/153 (35.95%), Postives = 74/153 (48.37%), Query Frame = 2
Query:  659 TAPSRMSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRMEVLKGQIDARDDAKA---GTASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMPE 1108
            TAP+R SRRL+G      D        +      T  P R     +     E +AE  + R+       +A  DA A    TASY+HCL RVRTM++  L  R++ IERA G     KM +F   L   G  +L E A +AL+RL   +P+PE
Sbjct:   86 TAPTRKSRRLQGISASKSDS----NEEMQVCDHYTPLPHR-----QLQTREEQSAERRKARLRAAALVAEAGADAAAMENPTASYEHCLMRVRTMTEKGLGNRIKAIERAAGRHCVVKMAIFRSCLLDEGYDELAEDAGSALERLKGLLPVPE 229          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: C1FFT4_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FFT4_MICCC)

HSP 1 Score: 65.1 bits (157), Expect = 4.910e-8
Identity = 43/99 (43.43%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  794 RHDYGLELN-AEEAEQRMEVLKGQIDARDDAKAGTASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLV 1087
            R +Y +E++ A EAE     L+        +  GTASYQH L RVRTMS+  L  RV+ IERA+G  A  KM +F+ VL   G  +L  +A  +L+RLV
Sbjct:  162 RGEYAVEVDGAHEAEAEAYRLRNAGIQERVSVVGTASYQHTLMRVRTMSEPALGNRVKAIERAKGKHAVVKMKLFARVLFLEGYEELSTLATESLERLV 260          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A7S3V986_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3V986_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.670e-7
Identity = 53/149 (35.57%), Postives = 69/149 (46.31%), Query Frame = 2
Query:  668 SRMSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRMEVLKG--QIDARDDAKAG-TASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMP 1105
            SR S+RL+G  VD   L  LP                    F      E   E  E R+   K   +  A   AK   TA+Y+HCLHRVR+M+D  LA RV+ IERA G     KM +F   L+     +L E++  AL+RL    P+P
Sbjct:  120 SRKSKRLQGVGVDNEPLSKLPQDR----------------EFVMRERSERVKECREVRLRAAKAVAECGAEKAAKENPTATYEHCLHRVRSMTDKGLANRVKAIERAAGKHCVVKMAIFKSCLQDENMWELAELSSNALERLKALKPIP 252          
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Match: A0A7S4SJE8_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4SJE8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 2.440e-7
Identity = 50/146 (34.25%), Postives = 70/146 (47.95%), Query Frame = 2
Query:  659 TAPSRMSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNAEEAEQRMEVLKGQIDARDDAKAG----TASYQHCLHRVRTMSDGQLARRVRTIERARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRL 1084
            T P+R S RL+G        + +PG     +  +  +        R +   E      E R+   K   DA  + KAG    TA+Y+HCL RVRTM++  L  RVR IERA G     KM +F   L+  G  +L ++A  AL+RL
Sbjct:   96 TEPARKSLRLQG--------IRVPGEEKEDMLESKEERQERVQKQREEIVKECR----ETRLRAAKAVADAGAE-KAGKENPTATYEHCLMRVRTMTEKGLVNRVRAIERAAGKHCVVKMAIFKSCLQDEGMWELAQVAADALERL 228          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6137.14704.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18
Match NameE-valueIdentityDescription
D7FTC8_ECTSI4.360e-7573.89Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WS01_9STRA2.330e-933.14Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7R9UAY5_9STRA2.950e-932.72Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A8J5XV63_DIALT7.180e-932.54Uncharacterized protein n=2 Tax=Diacronema lutheri... [more]
A0A7S0D6P6_MICPS7.810e-950.67Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
B7GD44_PHATC2.620e-836.91Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S1B9Z9_9STRA2.710e-835.95Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
C1FFT4_MICCC4.910e-843.43Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
A0A7S3V986_9STRA1.670e-735.57Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S4SJE8_9STRA2.440e-734.25Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6137contigL-elsbetiae_contig6137:1403..4408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score226.1
Seed ortholog evalue1.1e-56
Seed eggNOG ortholog2880.D7FTC8
Hectar predicted targeting categoryother localisation
EggNOG OGs2E4F7@1,2SC7W@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_000890.1
Exons4
Model size1485
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6137.14704.1prot_L-elsbetiae_contig6137.14704.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6137 1768..3735 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.8141341-UTR-L-elsbetiae_contig6137:1402..17671622816671.8141341-UTR-L-elsbetiae_contig6137:1402..1767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 1403..1767 -
1691683728.6806262-UTR-L-elsbetiae_contig6137:1402..17671691683728.6806262-UTR-L-elsbetiae_contig6137:1402..1767Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 1403..1767 -
1622816671.8726926-UTR-L-elsbetiae_contig6137:3735..44081622816671.8726926-UTR-L-elsbetiae_contig6137:3735..4408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 3736..4408 -
1691683728.7332673-UTR-L-elsbetiae_contig6137:3735..44081691683728.7332673-UTR-L-elsbetiae_contig6137:3735..4408Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6137 3736..4408 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816671.8253422-CDS-L-elsbetiae_contig6137:1767..19291622816671.8253422-CDS-L-elsbetiae_contig6137:1767..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 1768..1929 -
1691683728.6903214-CDS-L-elsbetiae_contig6137:1767..19291691683728.6903214-CDS-L-elsbetiae_contig6137:1767..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 1768..1929 -
1622816671.8388076-CDS-L-elsbetiae_contig6137:2379..24901622816671.8388076-CDS-L-elsbetiae_contig6137:2379..2490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 2380..2490 -
1691683728.7013867-CDS-L-elsbetiae_contig6137:2379..24901691683728.7013867-CDS-L-elsbetiae_contig6137:2379..2490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 2380..2490 -
1622816671.851735-CDS-L-elsbetiae_contig6137:2938..30121622816671.851735-CDS-L-elsbetiae_contig6137:2938..3012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 2939..3012 -
1691683728.7154233-CDS-L-elsbetiae_contig6137:2938..30121691683728.7154233-CDS-L-elsbetiae_contig6137:2938..3012Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 2939..3012 -
1622816671.862387-CDS-L-elsbetiae_contig6137:3635..37351622816671.862387-CDS-L-elsbetiae_contig6137:3635..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 3636..3735 -
1691683728.725155-CDS-L-elsbetiae_contig6137:3635..37351691683728.725155-CDS-L-elsbetiae_contig6137:3635..3735Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6137 3636..3735 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6137.14704.1

>prot_L-elsbetiae_contig6137.14704.1 ID=prot_L-elsbetiae_contig6137.14704.1|Name=mRNA_L-elsbetiae_contig6137.14704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MSRRLKGEPVDPHDLVALPGTWIGSLATATSKPGRTPPSFRHDYGLELNA
EEAEQRMEVLKGQIDARDDAKAGTASYQHCLHRVRTMSDGQLARRVRTIE
RARGAKAKEKMLVFSHVLRARGKTDLLEMAEAALDRLVRGVPMPEKES*
back to top

mRNA from alignment at L-elsbetiae_contig6137:1403..4408-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6137.14704.1 ID=mRNA_L-elsbetiae_contig6137.14704.1|Name=mRNA_L-elsbetiae_contig6137.14704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3006bp|location=Sequence derived from alignment at L-elsbetiae_contig6137:1403..4408- (Laminarionema elsbetiae ELsaHSoW15)
GTGTGGGCTGTTGGTTGCAAGCCACGCACGTGACGACGTAAATCAGTTAT GGTTTTTAGTTTGACAGCCGGCACTTCCCTCGGCAACTTTCATAGTGTCG CGCAACTCAAACAGTAGTTAGCAAGTGATCGGGTTTTTGTGGAATGTTCT GGCGATGGCAGGCACACACAAACAGACACACGCGGAAGCCGGCACAACAT GTTTTGCGCCGGCCTTCTGTTCTTCCCCCGGTGTTGAACTATTTTCGAAA TCGTTGGAAACGCTCCAAGCTCCAAGTCGGGCAGAACAGCATGCAGGTAT CGGACGCTTGGTCTGCTCTCTTGCTTCCCCCCTGGAGTGTTTTTCCGCGA GCAACGTCTGAAAGAGAGTCCTGTACATATCTAACTATGCACGCCTCAAT ACATGCGTACATACGTTGAGATCACCCACAAAACCTTGCTCTTAAACGAA CCGAAATCTCAGCGTGAACTGTTTAACACGGCGTACTGCTGTTGGTGGAA CAATTCTTATTTCCTCTTCAGCCACGATCTTCATCTCACTACGCTTCGTC CTTCCCCCCAACTACTGTTGCGCGTAACTGCACAAGAAGGCTCCTTCCTC TCAGTCGACGAAAAGACCAAGGTCCCCCGCAAAGTACCAAGGGAGCCCTA AATCGAGGACAGCCCCGTCGCGCATGTCGAGACGACTTAAGGGAGAGCCG GTCGACCCACATGACTTGGTGGCATTGCCGGGAACGTGGATCGGCAGCTT AGCCACCGCAACCAGCAAGCCCGGTGATTATATTATTTTGAAACTAAAAA TCAGGAAATCAAAGAAATAACCTCCCCACAAGAGACGGGACTGTGAGCGA AATAGCAGTTCAATTACAATGATGTAATATTGGTCCGGCCGAGTAGAAAA ACACCCAAAATGTTGGAAAGGTTGGAAACCTCCCCTGCATAACTCTGCCA AGTCAACCAGCAAATATTCCGGGGAGAAGCCCACCGTAATGTCGTGGTCT TGTTGTCTCCTTCTAAGATAATAGGATTACGTTGCGGTTTACCGGAGTAC TAAAAGTCAAGAGTGCTGGTTTGAATGTAATTGTGGTTGCTGTTGTGCAG AAGGGTAACTATCAGTAATTCCGTGAGAGGTATGTAGATGCGCTGCTTCT GGCCACGCTAAATATGCGGCTGATCGAGACAATAACATTGAGGGTGGAGG CGCTCTCAAGCTGGAGATGGTGGCAAAGCCGTGCAACGTCCCCGCCCGAC AAGGAGTTTCACCGTATGTATCCATTTCCTTCCAGCCACGTCGCCCCCAA GGCCGTTCGTTGCATGAGTGTTTCCACATTTCTCTCTCTGAGAGCAAAAC CCCTCCTCCACCTGTTTTCATCTCCGTGTGTCTCTCCTGAACCCAGGTAG AACACCTCCTTCGTTTCGACACGACTACGGCCTGGAACTGAACGCAGAAG AGGCAGAACAAAGGATGGAGGTGCGGCTCTCGAAGTAGAAATCGAGTGGT TGGGACACGAAAAAAGGACAGGCCCGTTTCCCGACGGATCTGATTATTGA CACCTCAACCCAGACCGAGTAGAATGGGTATGGTACCTATCTTAGGGGTA ATTATCTTCCGGATTGGCTTTTCTTCCGGATTGGCACCTCGCATGGGGCT TGGTGTCTACTCTCGTAGGGGTGGGTGCCTACATACCATGTTTTTTATAT TTTTGTCGGCGTTGAATGAATTTGTGCCTTGTTTTGTGACCGATCCCACG GATATTTGGACTAGAGAGCTGATGTGAGAAACAACGACAGCAACAAAAGC ATGAGCACGGAGTGGTATTTTCCTGTTCAGCCGTTCAACCACAGCTGTCA ACCGTGGACCTGATCATTTTCCGCCCTTTTTCACTGCCAAAAAAACAATT TACGCCGTTGGCCTATAGGTGCTGAAGGGACAGATCGATGCAAGAGATGA CGCGAAAGCGGGCACAGCAAGCTACCAACACTGCCTTCACCGCGTGCGGA CGATGTCAGATGGGCAGCTTGCAAGGAGGGTACGCACGTTGTTCGGAAAT ACTTGTGTCTGGTGCTGGTCTGTGATGAGAGCTGATATGTACATACGTTC GGCACGAAGGAACACAACAAACACTATCTTTATGCAAAGCTGTATTGTTT CTCCAACGCGATTGATGCTTCTCCAATCTCTGGTACTCAGTGTAGTCAGC GCTTGCGGCCCAACACATGTTGTTGCCAAGCTGGTGAATGTTCTCGTTTC GTCCTTTGCCCCCACAAAACTGGGATCTCCCGAGCTGTCGTTGATGCAAT CAGGCGGTTGCTCTGGCGCTGCGGAACGAGCTCCTCCCGTGCTTGCGTTG GCCTTGTTTCACATTCGGCTCCACCTTTTGGTGCATCGTCATTGTCAAAG TAGAGGTGGCGGTTTTAAACCCACTTGATATTCGTTACACCGACCTCGTC TCTCTCCCTCCCTCCTCATGCCTGACCAGGTGCGCACCATCGAGCGAGCG CGAGGAGCCAAGGCCAAGGAGAAGATGCTGGTATTCTCCCATGTTCTTCG CGCCAGAGGCAAGACCGACCTCCTCGAGATGGCCGAAGCGGCGCTCGATC GTCTCGTCCGTGGTGTGCCCATGCCGGAAAAGGAGAGCTGACCCCCCCCG GACAGCAGGAGAGAAGAGCCCTTCTTCAGAATATTACTTATGATACGCGC TACAGTATAATAAGCGCTCCCTTTTAACTAATTGCATTCCAGCTGCGCAG GTTTCGCTTCTTTGCGTCGAGTTTCAACGTTGTGCTTCAGGGAGCATGAC GTGCTCGCTGTGCTGGATTTGAATTTGCAAGGAAAACAAATGCTGCCTGT GCATCAGATAGATGGATGGATGTGCCGCAGCTAGATGCAATACTGGATCC ACAGATTGGTACAGGTATCCCGTTTTGTCGAGTTGAGGCCACGTGATACA AGGTAGGGTACTGATTCTTGATGTTTTTTTCATTTTTAATTGGTTGGTTC TTTCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6137:1403..4408-

>mRNA_L-elsbetiae_contig6137.14704.1 ID=mRNA_L-elsbetiae_contig6137.14704.1|Name=mRNA_L-elsbetiae_contig6137.14704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig6137:1403..4408- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGAGACGACTTAAGGGAGAGCCGGTCGACCCACATGACTTGGTGGC
ATTGCCGGGAACGTGGATCGGCAGCTTAGCCACCGCAACCAGCAAGCCCG
ATGTCGAGACGACTTAAGGGAGAGCCGGTCGACCCACATGACTTGGTGGC
ATTGCCGGGAACGTGGATCGGCAGCTTAGCCACCGCAACCAGCAAGCCCG
GTAGAACACCTCCTTCGTTTCGACACGACTACGGCCTGGAACTGAACGCA
GAAGAGGCAGAACAAAGGATGGAGGTAGAACACCTCCTTCGTTTCGACAC
GACTACGGCCTGGAACTGAACGCAGAAGAGGCAGAACAAAGGATGGAGGT
GCTGAAGGGACAGATCGATGCAAGAGATGACGCGAAAGCGGGCACAGCAA
GCTACCAACACTGCCTTCACCGCGTGCGGACGATGTCAGATGGGCAGCTT
GCAAGGAGGGTGCTGAAGGGACAGATCGATGCAAGAGATGACGCGAAAGC
GGGCACAGCAAGCTACCAACACTGCCTTCACCGCGTGCGGACGATGTCAG
ATGGGCAGCTTGCAAGGAGGGTGCGCACCATCGAGCGAGCGCGAGGAGCC
AAGGCCAAGGAGAAGATGCTGGTATTCTCCCATGTTCTTCGCGCCAGAGG
CAAGACCGACCTCCTCGAGATGGCCGAAGCGGCGCTCGATCGTCTCGTCC
GTGGTGTGCCCATGCCGGAAAAGGAGAGCTGAGTGCGCACCATCGAGCGA
GCGCGAGGAGCCAAGGCCAAGGAGAAGATGCTGGTATTCTCCCATGTTCT
TCGCGCCAGAGGCAAGACCGACCTCCTCGAGATGGCCGAAGCGGCGCTCG
ATCGTCTCGTCCGTGGTGTGCCCATGCCGGAAAAGGAGAGCTGA
back to top