mRNA_L-elsbetiae_contig6123.14687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6123.14687.1
Unique NamemRNA_L-elsbetiae_contig6123.14687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6123.14687.1 vs. uniprot
Match: D7FK27_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK27_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 1.130e-22
Identity = 57/103 (55.34%), Postives = 68/103 (66.02%), Query Frame = 1 
Query:    1 LRAGISDGDEALPPSELEIFAEDPRWASKVEKFVIKTGADTEAVEGYLNNVRETSWAAGRTFRCKHLVLLAFAEDARSDGRECAS-CRLTRAVQAASKHTTYA 306
            LR   ++G  A P S+L +FAEDP WA KVE+F+++ GAD   VE  L+ VR  SW +GRT   K+LVLLAFAEDA   G E A   RLTRAV AAS HT  A
Sbjct:   54 LRVTPANGGGAPPVSDLAVFAEDPNWACKVERFMVQAGADRHGVENALDQVRHVSWESGRTLLGKYLVLLAFAEDALDVGNEGAHPSRLTRAVLAASTHTAEA 156
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BLAST of mRNA_L-elsbetiae_contig6123.14687.1 vs. uniprot
Match: A0A6H5JRN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRN8_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 1.670e-20
Identity = 52/87 (59.77%), Postives = 62/87 (71.26%), Query Frame = 1 
Query:   46 ELEIFAEDPRWASKVEKFVIKTGADTEAVEGYLNNVRETSWAAGRTFRCKHLVLLAFAEDARSDGRECASCRLTRAVQAASKHTTYA 306
            +L+IFAEDP WA+KVE F++  G D   VE  L+ VR  SWAAGRT R K +VLLAFAEDARSDG       LT+AV AAS+HT+ A
Sbjct:   74 DLKIFAEDPHWAAKVEDFMVGEGEDQLGVESALDQVRHVSWAAGRTLRRKLVVLLAFAEDARSDG-------LTKAVLAASRHTSNA 153
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BLAST of mRNA_L-elsbetiae_contig6123.14687.1 vs. uniprot
Match: D7FK33_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK33_ECTSI)

HSP 1 Score: 92.8 bits (229), Expect = 7.900e-20
Identity = 50/87 (57.47%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:   46 ELEIFAEDPRWASKVEKFVIKTGADTEAVEGYLNNVRETSWAAGRTFRCKHLVLLAFAEDARSDGRECASCRLTRAVQAASKHTTYA 306
            +L+IFAEDP WA+KVE F++  G D   +E  L+ VR  SWAAGRT R K +VLLAFA+DARSD       RL +AV AAS+HTT A
Sbjct:   80 DLKIFAEDPDWAAKVEDFMVGEGEDQHGIESALDQVRHVSWAAGRTLRRKLVVLLAFAQDARSD-------RLAKAVLAASRHTTNA 159
[Close]
BLAST of mRNA_L-elsbetiae_contig6123.14687.1 vs. uniprot
Match: A0A6H5JEH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH3_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 2.910e-12
Identity = 42/70 (60.00%), Postives = 48/70 (68.57%), Query Frame = 1 
Query:  100 VIKTGADTEAVEGYLNNVRETSWAAGRTFRCKHLVLLAFAEDARSDGRECAS-CRLTRAVQAASKHTTYA 306
            +++TGAD   VE  L+ VR  SW +GRT R K+LVLLAFAEDA   G E A   RLTRAV AAS HTT A
Sbjct:    1 MVQTGADRHGVENALDQVRHVSWESGRTLRGKYLVLLAFAEDAPDVGNEGAHPSRLTRAVLAASMHTTEA 70
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6123.14687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FK27_ECTSI1.130e-2255.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRN8_9PHAE1.670e-2059.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FK33_ECTSI7.900e-2057.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JEH3_9PHAE2.910e-1260.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6123contigL-elsbetiae_contig6123:2316..5861 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue9.8e-17
Seed eggNOG ortholog2880.D7FK33
Hectar predicted targeting categoryother localisation
EggNOG OGs2EN0C@1,2SRIN@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6123.14687.1prot_L-elsbetiae_contig6123.14687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6123 2316..5861 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.2452407-CDS-L-elsbetiae_contig6123:2315..23991622816670.2452407-CDS-L-elsbetiae_contig6123:2315..2399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 2316..2399 -
1691683727.5644803-CDS-L-elsbetiae_contig6123:2315..23991691683727.5644803-CDS-L-elsbetiae_contig6123:2315..2399Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 2316..2399 -
1622816670.261575-CDS-L-elsbetiae_contig6123:2800..29351622816670.261575-CDS-L-elsbetiae_contig6123:2800..2935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 2801..2935 -
1691683727.5744617-CDS-L-elsbetiae_contig6123:2800..29351691683727.5744617-CDS-L-elsbetiae_contig6123:2800..2935Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 2801..2935 -
1622816670.2740324-CDS-L-elsbetiae_contig6123:5774..58611622816670.2740324-CDS-L-elsbetiae_contig6123:5774..5861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 5775..5861 -
1691683727.5834758-CDS-L-elsbetiae_contig6123:5774..58611691683727.5834758-CDS-L-elsbetiae_contig6123:5774..5861Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6123 5775..5861 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6123.14687.1

>prot_L-elsbetiae_contig6123.14687.1 ID=prot_L-elsbetiae_contig6123.14687.1|Name=mRNA_L-elsbetiae_contig6123.14687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
LRAGISDGDEALPPSELEIFAEDPRWASKVEKFVIKTGADTEAVEGYLNN
VRETSWAAGRTFRCKHLVLLAFAEDARSDGRECASCRLTRAVQAASKHTT
YA
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mRNA from alignment at L-elsbetiae_contig6123:2316..5861-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6123.14687.1 ID=mRNA_L-elsbetiae_contig6123.14687.1|Name=mRNA_L-elsbetiae_contig6123.14687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3546bp|location=Sequence derived from alignment at L-elsbetiae_contig6123:2316..5861- (Laminarionema elsbetiae ELsaHSoW15)
CTTCGGGCGGGTATTTCGGATGGCGACGAAGCTCTACCTCCCTCGGAGCT
GGAGATATTTGCCGAAGATCCCAGGTGGGCCTCGAAGGTGAGTCAAGCCC
GCTGTTAGCATATGTACCAATGCTTGGCAAAAAAAGGGGAACCCTCGCAA
GGAATCGCATCCGTCGTGCGCTCGTGAGATTTCGGAGATCTCTGGCGGTG
TGTATCTACGCATCTACCAAGCACGCTACGGATGTAAATCTATCTCTTGC
TACGACAGAGTAGTAGAAGTCAATGTCAGTGCATGCTCGTAGCGCCACGC
CTATCTGAACTTTACACGGAAATATGTATGTATCTGTGTGTGTTTACATG
TGTAGGTACATAGACAAATTGGTCTGGGAGAACTTATGTTCCTATATCTC
ATCAGTAGGCTATCGGTAGGCTGTCGGCGTCCAGTGGCTCAAACGAACGT
CAAGATGACAGCAGCTGTCTCTTTTAGTTGAAGAAAAACTCGTCAGTAGC
AGCTATCTTTTTTCGGTGGAACAAAAAACACAACTGCTGAGGGGCACAGA
CCTGCACAGCTGTGTTGACCTGCACAGCTGTGTCGACAAAGACGGAGCGT
GTTGATCAAGGGCGGAGCGCCCACACAGAAGCACCTGGTTAGTGCTGTTA
TTGTGCTTAGGAGGGCAGCTGTTTCGTCTGATCGATAACGTGGCGATTAA
CTAAGGACCTGCTTTTTGCGGGAAAAGAGGCGTTTGAGTTCAGAATCTTT
GGTTCAAAGATCTGGATTCAAAAATCGAGCGATTGTACCTGATGAGCACA
GACCGGCACTGTTGGCTTCAAGGGAGCGGCAGCACAGAAAAGAAGCGTTG
TCCGTTTGTTTCAGTATGCACAGCAGCTGTTGCTTCGGTGCTCAAAACAC
AGCGGCAGCTGCTGTTTTTTCAGTTGTAAATTTAGGAGTACTTCTGCTGA
TGCCTTCGCCTGTTCGCTTTGGTCTTGCATACAATCCCTGCCGCTGTGCT
CTCATGAGCTCGCTCCGAAGGGTGAACTTGCAGAATCGATAATATGTACG
TACCTAGATAGACTCGATCTATCTTATACAAACGCTCCTACTAGACTTGT
AGACTACGGATATAATCTATGTGGACTATCTCACAGTCTATCTCTTACAT
ATGTTTGTATCTACATGTAGTCTAGATATTTATGTACCACACGTGGGTCT
GTGAAGTACATACCTATGTCCACGTACATGCCCACTCCTCTCGTCAGCGA
ACACAAATCAGTATCTATCTATATGGATTGGAACCCTGCTGCTGACTTGC
TCTAAACATTCCATGGTTCGAATACTGGTTGTTTTGAGACTACATATATC
TTCATCTATATTCGCTCACGTTATGTCGATGCCCTCCGCTCTTATCGCCC
CGTGTGCTGAGCCTCCTGCGTGTAAATATTCCTCGCCTGGTTGACATCCA
GCGGGTCCTAGCCCCAAAGGAAGTATACCCACCAATATCTCACATGATCT
ATATGTTTTTTCTTTTTTTCCCGCCCACCATTGGCATATTTGTCGTCTGC
CCCACTGGCCCCCATCCTCCACTACGACTAGCTAGACAACCCAACGGGGT
CACACTGTATGATATGCCCCCCTCTGGTTACGCCCGTGCCTGAAAAAAAG
CACTCCCTTTTGATACCTATACGCAAGATATCATACCCCATACGTTTAAC
ATGACCCATACAAAACCCCACGAATCATAGGTACCCAGAAACGAAGGCGC
ACTGTACCATACTTCCTCTGACCGAAAATATAAGCAAGATTTGGATTTCC
GGGAATTTAAGCAAGGTTTCTCTTTTAAGGTGTTTCAAGGTGTTTTGAAA
ATCTTTTCCTTCCATTCTTTTTGCATCATGCTCGCATATGATAGGCGACC
AAGAAAAAATCATAATAAGAGGGGATGATAATGTTTCATCCCCTCCCCGG
AGAGACATTGATTTCCCTGCCACAGCGCTCAGTAGGAAAAAAGGGGTGCC
ATTTTTTCTCTCGTTCGCCGCAAAGAAAGGTGCTTTTTTCCTCGGGTTTT
TTCCCTTGTATTTTTGGGTGCATGAGCTACCTGTACAACCACAATTTGAA
GTATCTGCAGTAGTTCTTTGCTGTTGACCGGAACAAAAGTTTTAGGGTGG
CAAAAATCCTTACCCTCGAGGCGCCAAAACGAAGGGAAAGCGAAAAAAAA
AAACGAAAAACGAAAAAACGAAAAAAAAGAGTGTTCAAACCTAGGATCGA
ACTCCCGGCCTCTGGATAACACGTTTTCGCGAGCTATTTTTCCTACATAA
CGACCAAATCTTGCTTATATTTTCGGTCAGAGGAAGTATGAATTATGTCC
CATTAGCATACCTGGGTCAGGGACGTGCATTACATCCACGGCAGCCCCCC
CTGGAAGTCCTCTTTCAAAGGTTAGACGTGGACTGCTGATATTTAGATAG
ACTACGACATGCATGTGTAGTGGTACGATAGAGGTAACATACCGAACTGT
GTAAATAACAAACTTAGACCCCCACACAGGGGCCAGACGCAATATATTTC
TCCAGCTTCTGTGTACACCCAAAAGCCCCATCTGTGCAGGCACAGTTTTT
CTGCTGCGCGAGTCTGAAGTGCGCGTTGGTTCGTGCTGATAAACAATGGA
TGCGAAGCCAGAAGAGTAAGGTGAAGGAAAGTTTGCACCGACAGCGATGT
GCTTGCGGTGCCACTCAAAACCAGAAGTATACGCCGTCGACAGGTAGAGA
GGAGATGATATACGACGCGAGGCGCTCCGAGCCTGCGGGGCTGCCCTCTC
CGGCTGAGCACGCGGTCTGGGTGATGAACGCTTGTTTCCCTACACATCGG
TCGTGCTCCATACGAGATACACGGCCGCAGGAGGATGCATCACTGTATTG
TTCCCAAACGGGTGACCTTATCGCAGGTGGAAAAGTTCGTGATCAAAACC
GGGGCAGACACCGAAGCTGTTGAAGGTTATTTGAACAACGTACGAGAAAC
TTCATGGGCAGCTGGTCGAACCTTCAGATGCAAGCATTTGGTTCTGCTCG
CCTTCGCAGAGGTGAGCAGGGTTTCTCTGCACAGTGTCTTCGCGCATTCG
GCCGCTGCTTGCATTGTCCGGTACTGCGCCGTTCGTCGTCGCCCTAGCTG
AAGTCGTCTCCTCGAGAGTGTTTGTAACGAACGACTCAAGGTAGGAAATA
CTCAAGAAGTAGAGATACTGCTTTAGAGGTCTTCCTGACGTTTTCAGAAT
CGGCAAATATACGTCGCCAGCATCCTCCACATATTGGTGCCCTCGGATTC
GTCTACGGCTGCCATTGTGTTGCCTAGCTCAGAAAACAGAAGCCATGCTG
TGTCCAGAATGCGCGTCTTGTAAGAAGAAAAAAGCATGTCAAGAGGTTGG
TTCGCATCTTCATTGTCGACTAACCGCCCTCCCCCTCGTCCGTGCTACGT
GCCTCTCATCAGGATGCCCGGTCTGATGGGAGGGAGTGTGCGTCGTGTAG
GCTGACGAGGGCGGTACAGGCAGCATCGAAGCACACCACCTACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6123:2316..5861-

>mRNA_L-elsbetiae_contig6123.14687.1 ID=mRNA_L-elsbetiae_contig6123.14687.1|Name=mRNA_L-elsbetiae_contig6123.14687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6123:2316..5861- (Laminarionema elsbetiae ELsaHSoW15)
CTTCGGGCGGGTATTTCGGATGGCGACGAAGCTCTACCTCCCTCGGAGCT
GGAGATATTTGCCGAAGATCCCAGGTGGGCCTCGAAGCTTCGGGCGGGTA
TTTCGGATGGCGACGAAGCTCTACCTCCCTCGGAGCTGGAGATATTTGCC
GAAGATCCCAGGTGGGCCTCGAAGGTGGAAAAGTTCGTGATCAAAACCGG
GGCAGACACCGAAGCTGTTGAAGGTTATTTGAACAACGTACGAGAAACTT
CATGGGCAGCTGGTCGAACCTTCAGATGCAAGCATTTGGTTCTGCTCGCC
TTCGCAGAGGTGGAAAAGTTCGTGATCAAAACCGGGGCAGACACCGAAGC
TGTTGAAGGTTATTTGAACAACGTACGAGAAACTTCATGGGCAGCTGGTC
GAACCTTCAGATGCAAGCATTTGGTTCTGCTCGCCTTCGCAGAGGATGCC
CGGTCTGATGGGAGGGAGTGTGCGTCGTGTAGGCTGACGAGGGCGGTACA
GGCAGCATCGAAGCACACCACCTACGCCGATGCCCGGTCTGATGGGAGGG
AGTGTGCGTCGTGTAGGCTGACGAGGGCGGTACAGGCAGCATCGAAGCAC
ACCACCTACGCC
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