mRNA_L-elsbetiae_contig6122.14683.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6122.14683.1
Unique NamemRNA_L-elsbetiae_contig6122.14683.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6122.14683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6122contigL-elsbetiae_contig6122:1681..2275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size595
Cds size582
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.1190531-CDS-L-elsbetiae_contig6122:1680..22621622816670.1190531-CDS-L-elsbetiae_contig6122:1680..2262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 1681..2262 +
1691683727.512929-CDS-L-elsbetiae_contig6122:1680..22621691683727.512929-CDS-L-elsbetiae_contig6122:1680..2262Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6122 1681..2262 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816670.1300414-UTR-L-elsbetiae_contig6122:2262..22751622816670.1300414-UTR-L-elsbetiae_contig6122:2262..2275Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6122 2263..2275 +
1691683727.5244954-UTR-L-elsbetiae_contig6122:2262..22751691683727.5244954-UTR-L-elsbetiae_contig6122:2262..2275Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6122 2263..2275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6122.14683.1prot_L-elsbetiae_contig6122.14683.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6122 1681..2262 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6122.14683.1

>prot_L-elsbetiae_contig6122.14683.1 ID=prot_L-elsbetiae_contig6122.14683.1|Name=mRNA_L-elsbetiae_contig6122.14683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
RRRRRRRRRRWPFFGSVCAGGLQLPPPCLLLLLLFCLSGRFLPSTYEAAA
SPTQHARGAKTGKGPAALRFPLLAGCTWLLSSLYRLTHGRTRCIRLGYCC
LLCIIERGSLSFFRSPRPVSPLLWEGLVAVRCFGALDSFTTTSHLRVEIS
FNRMNDVAFRRPAGTVLLCPEAAFSPSTTYIGGMERSGFVSSD*
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mRNA from alignment at L-elsbetiae_contig6122:1681..2275+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6122.14683.1 ID=mRNA_L-elsbetiae_contig6122.14683.1|Name=mRNA_L-elsbetiae_contig6122.14683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=595bp|location=Sequence derived from alignment at L-elsbetiae_contig6122:1681..2275+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGCCTTTTTTTGGCAGTGT
GTGTGCGGGCGGCTTGCAGCTTCCTCCGCCGTGTCTCCTGCTTCTCCTTC
TCTTTTGTCTCTCTGGGCGGTTTTTGCCAAGTACTTATGAAGCGGCAGCG
AGCCCCACACAACATGCGAGAGGCGCTAAGACAGGCAAGGGCCCCGCCGC
GCTGCGCTTCCCATTGCTGGCTGGGTGCACATGGTTGCTTTCTTCGTTGT
ATCGTTTAACACATGGAAGAACCAGATGTATCCGTTTAGGTTATTGCTGT
TTGTTGTGTATTATTGAGCGGGGCTCGCTTTCATTTTTTCGGTCGCCTCG
CCCAGTGTCCCCGTTGTTGTGGGAGGGGTTGGTCGCCGTGAGATGCTTCG
GTGCGCTAGATTCTTTCACCACCACCTCACATCTTCGGGTAGAAATTAGC
TTTAATAGAATGAATGATGTTGCGTTCCGCCGACCGGCTGGAACAGTGCT
GCTGTGCCCAGAGGCTGCCTTCTCTCCGTCGACTACGTACATTGGTGGGA
TGGAAAGATCCGGTTTTGTGTCTTCGGATTGAGGAGGGCGGTAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6122:1681..2275+

>mRNA_L-elsbetiae_contig6122.14683.1 ID=mRNA_L-elsbetiae_contig6122.14683.1|Name=mRNA_L-elsbetiae_contig6122.14683.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig6122:1681..2275+ (Laminarionema elsbetiae ELsaHSoW15)
CGGCGGCGGCGGCGGCGGCGGCGGCGGAGGTGGCCTTTTTTTGGCAGTGT
GTGTGCGGGCGGCTTGCAGCTTCCTCCGCCGTGTCTCCTGCTTCTCCTTC
TCTTTTGTCTCTCTGGGCGGTTTTTGCCAAGTACTTATGAAGCGGCAGCG
AGCCCCACACAACATGCGAGAGGCGCTAAGACAGGCAAGGGCCCCGCCGC
GCTGCGCTTCCCATTGCTGGCTGGGTGCACATGGTTGCTTTCTTCGTTGT
ATCGTTTAACACATGGAAGAACCAGATGTATCCGTTTAGGTTATTGCTGT
TTGTTGTGTATTATTGAGCGGGGCTCGCTTTCATTTTTTCGGTCGCCTCG
CCCAGTGTCCCCGTTGTTGTGGGAGGGGTTGGTCGCCGTGAGATGCTTCG
GTGCGCTAGATTCTTTCACCACCACCTCACATCTTCGGGTAGAAATTAGC
TTTAATAGAATGAATGATGTTGCGTTCCGCCGACCGGCTGGAACAGTGCT
GCTGTGCCCAGAGGCTGCCTTCTCTCCGTCGACTACGTACATTGGTGGGA
TGGAAAGATCCGGTTTTGTGTCTTCGGATTGACGGCGGCGGCGGCGGCGG
CGGCGGCGGAGGTGGCCTTTTTTTGGCAGTGTGTGTGCGGGCGGCTTGCA
GCTTCCTCCGCCGTGTCTCCTGCTTCTCCTTCTCTTTTGTCTCTCTGGGC
GGTTTTTGCCAAGTACTTATGAAGCGGCAGCGAGCCCCACACAACATGCG
AGAGGCGCTAAGACAGGCAAGGGCCCCGCCGCGCTGCGCTTCCCATTGCT
GGCTGGGTGCACATGGTTGCTTTCTTCGTTGTATCGTTTAACACATGGAA
GAACCAGATGTATCCGTTTAGGTTATTGCTGTTTGTTGTGTATTATTGAG
CGGGGCTCGCTTTCATTTTTTCGGTCGCCTCGCCCAGTGTCCCCGTTGTT
GTGGGAGGGGTTGGTCGCCGTGAGATGCTTCGGTGCGCTAGATTCTTTCA
CCACCACCTCACATCTTCGGGTAGAAATTAGCTTTAATAGAATGAATGAT
GTTGCGTTCCGCCGACCGGCTGGAACAGTGCTGCTGTGCCCAGAGGCTGC
CTTCTCTCCGTCGACTACGTACATTGGTGGGATGGAAAGATCCGGTTTTG
TGTCTTCGGATTGA
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