mRNA_L-elsbetiae_contig612.14681.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig612.14681.1
Unique NamemRNA_L-elsbetiae_contig612.14681.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig612.14681.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig612contigL-elsbetiae_contig612:33529..34246 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size718
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig612.14681.1prot_L-elsbetiae_contig612.14681.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig612 33748..34146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.4446845-UTR-L-elsbetiae_contig612:33528..337471622816669.4446845-UTR-L-elsbetiae_contig612:33528..33747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig612 33529..33747 +
1691683727.0316558-UTR-L-elsbetiae_contig612:33528..337471691683727.0316558-UTR-L-elsbetiae_contig612:33528..33747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig612 33529..33747 +
1622816669.4709265-UTR-L-elsbetiae_contig612:34146..342461622816669.4709265-UTR-L-elsbetiae_contig612:34146..34246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig612 34147..34246 +
1691683727.057417-UTR-L-elsbetiae_contig612:34146..342461691683727.057417-UTR-L-elsbetiae_contig612:34146..34246Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig612 34147..34246 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.4557364-CDS-L-elsbetiae_contig612:33747..341461622816669.4557364-CDS-L-elsbetiae_contig612:33747..34146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 33748..34146 +
1691683727.0438082-CDS-L-elsbetiae_contig612:33747..341461691683727.0438082-CDS-L-elsbetiae_contig612:33747..34146Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 33748..34146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig612.14681.1

>prot_L-elsbetiae_contig612.14681.1 ID=prot_L-elsbetiae_contig612.14681.1|Name=mRNA_L-elsbetiae_contig612.14681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
MTSSCVWLNQSGHTHTLPTPPRHHKMSSSCSSSSSSSSNNNNNNNWKVRH
FPPVQQSLLFSRVALSCLLKPKPVFVCRPNLHLFSGELLLFVVSHISSLV
QNILTPAEKKNFLSAPKRLSWPLLAYDIHPSL*
back to top

mRNA from alignment at L-elsbetiae_contig612:33529..34246+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig612.14681.1 ID=mRNA_L-elsbetiae_contig612.14681.1|Name=mRNA_L-elsbetiae_contig612.14681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=718bp|location=Sequence derived from alignment at L-elsbetiae_contig612:33529..34246+ (Laminarionema elsbetiae ELsaHSoW15)
GCCTGTTCCCAATAGAGCGAGAGAGAGTCGGCGAGGAGTGTGCGCGTGTC
ACTGCCAAACTCCTCCAGCAGCGCACCCCCCCCCACACCCTTTGTCAACC
CTCAACCCCAAACAACAACTTATCATTTCCCCTTACTGATTAAAATCGCC
ACCACCGCCACAACTCCCTTTGTTACCGTAGAGAACTCGCGGATATTTGA
ATATCCCATTTCCCGATACATGACGTCATCGTGCGTGTGGTTGAACCAAT
CCGGACACACACACACACTCCCTACGCCCCCACGCCACCACAAGATGTCC
TCCTCTTGCAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACAACAA
CAACTGGAAAGTTCGCCACTTTCCACCGGTACAGCAGTCCCTCCTTTTCA
GTCGAGTGGCTTTATCTTGCCTTCTCAAGCCAAAGCCCGTGTTCGTGTGT
CGCCCTAATCTCCACCTATTTTCCGGAGAGTTGCTGTTGTTTGTTGTTTC
TCACATTAGCTCTCTAGTCCAAAACATCCTTACGCCAGCTGAAAAAAAAA
ACTTCCTTTCCGCACCCAAACGCCTCTCTTGGCCTCTCTTGGCCTACGAC
ATACACCCAAGTCTTTGATTCAGCGGCGAGCACTTTGCTTTCATGCCGCC
GCCCCCCGCCCCTCTCTGTTTTCCCGGCGCCAAATTATGTCACACCCACC
ACCAGGGCCCGGTCGGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig612:33529..34246+

>mRNA_L-elsbetiae_contig612.14681.1 ID=mRNA_L-elsbetiae_contig612.14681.1|Name=mRNA_L-elsbetiae_contig612.14681.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig612:33529..34246+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGTCATCGTGCGTGTGGTTGAACCAATCCGGACACACACACACACT
CCCTACGCCCCCACGCCACCACAAGATGTCCTCCTCTTGCAGCAGCAGCA
GCAGCAGCAGCAGCAACAACAACAACAACAACAACTGGAAAGTTCGCCAC
TTTCCACCGGTACAGCAGTCCCTCCTTTTCAGTCGAGTGGCTTTATCTTG
CCTTCTCAAGCCAAAGCCCGTGTTCGTGTGTCGCCCTAATCTCCACCTAT
TTTCCGGAGAGTTGCTGTTGTTTGTTGTTTCTCACATTAGCTCTCTAGTC
CAAAACATCCTTACGCCAGCTGAAAAAAAAAACTTCCTTTCCGCACCCAA
ACGCCTCTCTTGGCCTCTCTTGGCCTACGACATACACCCAAGTCTTTGAA
TGACGTCATCGTGCGTGTGGTTGAACCAATCCGGACACACACACACACTC
CCTACGCCCCCACGCCACCACAAGATGTCCTCCTCTTGCAGCAGCAGCAG
CAGCAGCAGCAGCAACAACAACAACAACAACAACTGGAAAGTTCGCCACT
TTCCACCGGTACAGCAGTCCCTCCTTTTCAGTCGAGTGGCTTTATCTTGC
CTTCTCAAGCCAAAGCCCGTGTTCGTGTGTCGCCCTAATCTCCACCTATT
TTCCGGAGAGTTGCTGTTGTTTGTTGTTTCTCACATTAGCTCTCTAGTCC
AAAACATCCTTACGCCAGCTGAAAAAAAAAACTTCCTTTCCGCACCCAAA
CGCCTCTCTTGGCCTCTCTTGGCCTACGACATACACCCAAGTCTTTGA
back to top