mRNA_L-elsbetiae_contig612.14678.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig612.14678.1
Unique NamemRNA_L-elsbetiae_contig612.14678.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig612.14678.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig612contigL-elsbetiae_contig612:16821..17724 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size279
Cds size177
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig612.14678.1prot_L-elsbetiae_contig612.14678.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig612 16921..17724 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.3910587-UTR-L-elsbetiae_contig612:16820..169201622816669.3910587-UTR-L-elsbetiae_contig612:16820..16920Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig612 16821..16920 +
1691683726.981547-UTR-L-elsbetiae_contig612:16820..169201691683726.981547-UTR-L-elsbetiae_contig612:16820..16920Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig612 16821..16920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.4015398-CDS-L-elsbetiae_contig612:16920..170671622816669.4015398-CDS-L-elsbetiae_contig612:16920..17067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 16921..17067 +
1691683727.004746-CDS-L-elsbetiae_contig612:16920..170671691683727.004746-CDS-L-elsbetiae_contig612:16920..17067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 16921..17067 +
1622816669.4147868-CDS-L-elsbetiae_contig612:17694..177241622816669.4147868-CDS-L-elsbetiae_contig612:17694..17724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 17695..17724 +
1691683727.0185823-CDS-L-elsbetiae_contig612:17694..177241691683727.0185823-CDS-L-elsbetiae_contig612:17694..17724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig612 17695..17724 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig612.14678.1

>prot_L-elsbetiae_contig612.14678.1 ID=prot_L-elsbetiae_contig612.14678.1|Name=mRNA_L-elsbetiae_contig612.14678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MSLTSNYLDHLDGRLEKQGGRGSVARLLLVARKGDAADDPDAVVRYHERV
FEEILSEQH
back to top

mRNA from alignment at L-elsbetiae_contig612:16821..17724+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig612.14678.1 ID=mRNA_L-elsbetiae_contig612.14678.1|Name=mRNA_L-elsbetiae_contig612.14678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=904bp|location=Sequence derived from alignment at L-elsbetiae_contig612:16821..17724+ (Laminarionema elsbetiae ELsaHSoW15)
GATATATCCAACATAAAACGCCCAGTTCTACGCTGTGAGCCTCTCTTTCG
CCTTGGTCATCTATCTCGCGCTGCCGCTCTCAGCGCCAAATCCAAATGAC
ATGAGTCTGACGTCGAACTACCTCGATCACCTCGACGGCCGCCTGGAGAA
ACAGGGCGGGCGAGGAAGCGTGGCACGCCTGCTCCTTGTGGCCAGGAAGG
GTGATGCTGCTGATGATCCCGATGCGGTAGTGCGGTATCATGAGCGGGTG
AGAGAAACGAATGAAGGAGCTGGTATTGTACAGGGGGGGCTGCTCGTTCA
AAGCGCGTAAACGAATGAAGGAGCTGGTATTGTACAGGGGGGGCTGCTCG
TTCAAAGCGCGTAACTACTGTAATCAAGAGTTTATTATCTTTCTTATTCG
ATGAGTGGTATATTCTCTACACACATCCTTGTGGCTTCCGCTACCACACG
TTCCATCCAACTAATACACTTGGTGCAACCTGCAAAACTTAAAAACTGCC
AGCTGTAAACTACGCACCTACACGACCCCTGCATGATATTCAAAAACTCA
TTTCTACGCGTACTACTGAATGTTGTGTTTCAGGGGCATTTAAAATACTT
GCAAGTGTTCGTGTTTCCCTGTTCCAAAAACCGTCGATGTATATCTATAC
CTCGCCTAGATAGCTAAATAGTCTACATAAGTGGCTTTTGTATTGGGAGA
CCTACAGCAGTGTGTTGTACAAGCGAACGGAATGGGTCCAGATTACGAGG
GGGGAAACGCACCGAATAGCGGCCAAACGTCGTTGTGTACAAAGGTCTAA
CACGAGACACACGGTAGACTATAGACTCCACACCAGGACAAAACGCCTCC
CTTATTTGTTGTCAAACCGACCAGGTATTCGAAGAAATTCTATCGGAACA
GCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig612:16821..17724+

>mRNA_L-elsbetiae_contig612.14678.1 ID=mRNA_L-elsbetiae_contig612.14678.1|Name=mRNA_L-elsbetiae_contig612.14678.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig612:16821..17724+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGTCTGACGTCGAACTACCTCGATCACCTCGACGGCCGCCTGGAGAA
ACAGGGCGGGCGAGGAAGCGTGGCACGCCTGCTCCTTGTGGCCAGGAAGG
GTGATGCTGCTGATGATCCCGATGCGGTAGTGCGGTATCATGAGCGGATG
AGTCTGACGTCGAACTACCTCGATCACCTCGACGGCCGCCTGGAGAAACA
GGGCGGGCGAGGAAGCGTGGCACGCCTGCTCCTTGTGGCCAGGAAGGGTG
ATGCTGCTGATGATCCCGATGCGGTAGTGCGGTATCATGAGCGGGTATTC
GAAGAAATTCTATCGGAACAGCACGTATTCGAAGAAATTCTATCGGAACA
GCAC
back to top