mRNA_L-elsbetiae_contig6111.14671.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6111.14671.1
Unique NamemRNA_L-elsbetiae_contig6111.14671.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6111.14671.1 vs. uniprot
Match: D7FSL8_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL8_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 2.190e-6
Identity = 21/33 (63.64%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:   13 KPEYCSQHAKAGMVNVKSKRCAQQGCTTQPSYG 111
            +PE+CSQHAK GM+NV+ KRC   GCT +PS+G
Sbjct:    2 RPEFCSQHAKPGMINVRKKRCCHPGCTKKPSFG 34
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6111.14671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSL8_ECTSI2.190e-663.64EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6111contigL-elsbetiae_contig6111:5585..9237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1089
Cds size606
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6111.14671.1prot_L-elsbetiae_contig6111.14671.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6111 8584..9189 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.0727575-UTR-L-elsbetiae_contig6111:5584..59951622816669.0727575-UTR-L-elsbetiae_contig6111:5584..5995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6111 5585..5995 -
1691683726.8085668-UTR-L-elsbetiae_contig6111:5584..59951691683726.8085668-UTR-L-elsbetiae_contig6111:5584..5995Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6111 5585..5995 -
1622816669.0849469-UTR-L-elsbetiae_contig6111:8559..85831622816669.0849469-UTR-L-elsbetiae_contig6111:8559..8583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6111 8560..8583 -
1691683726.8180516-UTR-L-elsbetiae_contig6111:8559..85831691683726.8180516-UTR-L-elsbetiae_contig6111:8559..8583Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6111 8560..8583 -
1622816669.1070776-UTR-L-elsbetiae_contig6111:9189..92371622816669.1070776-UTR-L-elsbetiae_contig6111:9189..9237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6111 9190..9237 -
1691683726.8373601-UTR-L-elsbetiae_contig6111:9189..92371691683726.8373601-UTR-L-elsbetiae_contig6111:9189..9237Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6111 9190..9237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816669.0955033-CDS-L-elsbetiae_contig6111:8583..91891622816669.0955033-CDS-L-elsbetiae_contig6111:8583..9189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6111 8584..9189 -
1691683726.8274634-CDS-L-elsbetiae_contig6111:8583..91891691683726.8274634-CDS-L-elsbetiae_contig6111:8583..9189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6111 8584..9189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6111.14671.1

>prot_L-elsbetiae_contig6111.14671.1 ID=prot_L-elsbetiae_contig6111.14671.1|Name=mRNA_L-elsbetiae_contig6111.14671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=202bp
MVNVKSKRCAQQGCTTQPSYGVDDGSTKPEYCSQHAKAGMVDVMSKRCAQ
QGCPKRLYNAGPGTRTPQFCSEHAKAGSTVSCGSRAGAGSGGAESNADRN
LRRMNAASKRKKPVAPSALPEASLGDNGEGGNKKRLRQAGAPAVALAISV
KGEGAEELDVEAGSPSSQPRGSRRAAWVPLRPTPPARPKAEEGGAAVKTK
L*
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mRNA from alignment at L-elsbetiae_contig6111:5585..9237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6111.14671.1 ID=mRNA_L-elsbetiae_contig6111.14671.1|Name=mRNA_L-elsbetiae_contig6111.14671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3653bp|location=Sequence derived from alignment at L-elsbetiae_contig6111:5585..9237- (Laminarionema elsbetiae ELsaHSoW15)
GACGGCAGCAAGAAGCCGGAGTACTGCTCCCAGCACGCCAAGGCTGGAAT
GGTGAACGTCAAGAGCAAGAGATGTGCTCAACAAGGCTGCACCACTCAGC
CGTCATACGGTGTGGACGACGGCAGCACGAAGCCGGAGTACTGCTCCCAG
CACGCCAAGGCTGGAATGGTGGACGTCATGAGCAAGAGGTGTGCCCAACA
AGGCTGCCCCAAGAGACTGTACAACGCCGGTCCTGGCACCAGAACCCCCC
AGTTCTGCTCGGAGCATGCGAAGGCGGGGAGTACAGTTTCTTGCGGGAGT
CGGGCAGGGGCCGGGAGTGGAGGTGCGGAGTCAAACGCGGATCGCAACCT
ACGCCGTATGAACGCAGCGTCAAAGCGGAAGAAACCCGTCGCTCCATCAG
CGCTGCCCGAAGCGTCTTTGGGTGACAACGGGGAGGGCGGCAACAAGAAG
CGACTTCGTCAGGCTGGTGCACCCGCTGTGGCTCTGGCGATTTCAGTCAA
GGGAGAGGGGGCTGAAGAGCTGGACGTCGAGGCTGGCAGTCCATCTTCGC
AGCCCCGCGGTTCCCGACGCGCAGCATGGGTACCGCTCCGACCTACGCCT
CCGGCTCGGCCAAAGGCAGAAGAGGGAGGCGCAGCGGTGAAGACGAAGCT
CTGACTCTCCTGCCGGCATGGGATAGAGGTGCGCTGAAAACGGAGTTGGG
GCTCGCACACAAGTGTAGTGCAGCTCACCTGTAGTACATAATGTACAACA
AGCAGGATCCCAAGACGTTCTCTAGATGTAGATACATAAACCGCACGTGT
GTTCTCGAGCACCATAACGTGGAAAAAGACGGAGGGCCAACCGCATTTCG
TCTCCCCCCTTTCTGTCTCTTTGTCTTGCCCCGAAACAGCAGTGCACACA
TCATGCACAGCCGGGCAAACTTGTGCTCGACGACCGCCCTGTATTCAGCG
CAGCAGCTCTGCAATTTCTCAGGCGCTTTCACGAACATATTTATTTTGCT
CAACTGTCTAGTCTATATGCTTGCAGAAGAAGTTGTATCGCTCTCCCTTT
GTTTCCGGCAGCACACAGATTACGATCTTGATGTTTTCGCGCATGCTCTA
TTCAGCGCCCTGACGACTTTACCTCCCTCCCTCTGGTGGCAAGGAGATAT
GTTGTTTCTCCAAGACTGCCCCTTCAAACCTTTGATATATGTATGGGGTG
CAGTATAGCGGTTGGACGTGCTCAGAGGTGGCGTCGTCCAGGTTGGCTTT
GCAGCATCGTCGTCTCCCCACACCGTCATGGGTTTCTGGCGTCCTTTCTT
CCGGCTTTCACCGTGGTTGGGGCGCTTGAGCAATGACTTCCTTGAGAGAC
AGCAGCAGTACTACTGCCATCACCATTTTTGGGTGCTGCCTCCGACATTC
GTACATACAAACGCTCCGGACGCGGGGGCCTACCACCCCCCCCGTCCTTC
GCTTTCTGATAGTTAATACACAGGGAGGGTTCGATGATGTGTGGTTACCC
AGACTACCCAGGGTACCATTGGTGAGAGGAACAGGAACTGAGCGTGTTGT
AGTACATACAGTCAGTACATACTTCGAAGTACGTCTTTTGTGACAATTGA
GGCGAAAAGTCGTCGCGTATTATTGGTCGCGAATTCAGTTTTGAAGCCGT
CTTCTTGCATGAAATCGATCGTAGAAAAGCACTGTCACCCCAAGGAAGAC
TTGGTTGGGCTGACGTGACCCATGAGAAAAAATCTAGCAATTCACGGCCG
GTGGTGACAAACGTGCTGCCATTAGAAGATCCTAAGGAACACACGCAGGA
AATGAACGGTACGCAAATATCTAGACCGAAGAGGTAACACCGAATTTCCG
GCACCGTTGATGTGTGTGTGCAACTAACTAAATAAACCACACGTACGTTC
ATAATCAATCTCCATTCGATTACAATACATGCGTCCAGTCTACCCCCCCT
TCCTCTCGTTCCACTACTTACCGGTGCGTACGTAGTTGCCGACTACATAC
AGCAAAGGTTATGTGTGAAGTGCTGCCTGAACAAAGAGACGCGGCAGCAG
ACAGCGGCAGAGACGAAAAGTCGACACAGAGAGTGATGTCTGAATTCTGA
AGTGCTGTCTGCAGGTAGGTGCTTGCTGATGTTTTGTGGTGTAGTGTGAT
GTTGTGAGTACGACAGCAGGCACAGCAAATACTTGTAAGCGCGTGGTGTG
CTGTGGTGAGGTGAAGCTGCTGTGTACAGGAGCCGCGCGGTGACAGTTTA
TTATTATGGACGTGGTGTACTTGATTCAGCATTTATTGGACGGCTTTCTC
GACGGATTCCTGACCTTTTCGGCGCGGTTAAATAGAAATCAGTGAGTGAA
TCAACAATGGAACACGGTTCTCTGACGTGTGACGGGAGTGTGAAAAGTGC
GCGGATGACCACCGCGGCTGTAGCCGCGGCCTAGCCCTACCCTTGACCTG
TGACCTGGCACCTTACCAACGCCCTGTTGTGACCTAGAACTTTCCCAATG
CCCCCCGATGGGTCGGGTCGGGTTGGGGTAAAACAAAAGCAGGCAGTCAG
GAGTGGAACAGTGGAACCCGGATACTACCTTGGACCATACAGAAATTAGC
CCGTTGCGTCAGGTCTGCAGTTGAGATGAAAATATCCGCAAATCACGCAC
AGGGTGGTAGACCGCAGTGTCGGCCGCTGGCCGCTGGTTGACGACAATTG
AGCACACCAATATACTAATTTGTTGTCCCACTACAATACTACCGTATGTA
CACTTTTTCTTTAGCAAATAATACTTAATACAACAGAGAAGAACACCGAC
AAACTGCCCCGTGATACCGTACGAACGTTAGTGCATGACACAAAAATCTG
ACTTTGAAAAGAAATGCCGCTCACAGGTTGAGGTCTGCAGTTACTCTGTT
TTGCTGATCGATTCCAGAGTCAGTTTTGAGGCGTAGCCAGCGTTACTCGC
CTCACCCGAACGCGTCTAAAGTCAATCCCACGGCAACGGGTCTGTGTCGA
AAAGATTTTTGTCGCTGACGTCGTGCAAGGGGAAGCCGGGCGGTGCCGGC
GCGTGATCGCTGAGAGAGGCAACGCTTAACATACTGTTTTCAGAGGGGCG
TGAGTTCCCCCGCTTCGCTGTCAGCGAACGCGGAGCTGAGCCGTGAGCGA
CCGGGATGTTAAGATTCAGATTTCGTCATATTATTTAGATTTCGTCCTAA
TATGTTGTATGCAACATGTACACTTCCCGACACTTTCGGCAGGTTATCAC
ATCGCCGAGCGGACAAACAGGACGACGATAGACCGCCGCAACACAGTCAG
AGACCGCTGGGCCCCGCTGGCGGTACCTTCACGCCTCCCTTGGGGCGTTG
CTCGGCCAGAGAGAGCGTTGGATGCATGTCGTTGTGGTGGCGGAGAGGGA
AGAAATACAAAAATAAGCAAGACGAGGAGGAGAACGAACGTGCTGAACTG
AAGTGATACATACATACCTACTTTTCGTTCCCTGCTCATGTGATGAGACG
ACGCGGGTGTGGTTTGCCTGAGCACTCTTATGCACAACAAACAAGCGAAA
ATAAGAGGAGGCCGAGGGCCTGGGTTTGTTTTTTTCCCTCCAAAGGTCGT
TCGAGTTGATGGGCGTTCGCGTGACTTGTTTTTTGGGTGTGGCAAAAACA
TCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6111:5585..9237-

>mRNA_L-elsbetiae_contig6111.14671.1 ID=mRNA_L-elsbetiae_contig6111.14671.1|Name=mRNA_L-elsbetiae_contig6111.14671.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1212bp|location=Sequence derived from alignment at L-elsbetiae_contig6111:5585..9237- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTCAAGAGCAAGAGATGTGCTCAACAAGGCTGCACCACTCA
GCCGTCATACGGTGTGGACGACGGCAGCACGAAGCCGGAGTACTGCTCCC
AGCACGCCAAGGCTGGAATGGTGGACGTCATGAGCAAGAGGTGTGCCCAA
CAAGGCTGCCCCAAGAGACTGTACAACGCCGGTCCTGGCACCAGAACCCC
CCAGTTCTGCTCGGAGCATGCGAAGGCGGGGAGTACAGTTTCTTGCGGGA
GTCGGGCAGGGGCCGGGAGTGGAGGTGCGGAGTCAAACGCGGATCGCAAC
CTACGCCGTATGAACGCAGCGTCAAAGCGGAAGAAACCCGTCGCTCCATC
AGCGCTGCCCGAAGCGTCTTTGGGTGACAACGGGGAGGGCGGCAACAAGA
AGCGACTTCGTCAGGCTGGTGCACCCGCTGTGGCTCTGGCGATTTCAGTC
AAGGGAGAGGGGGCTGAAGAGCTGGACGTCGAGGCTGGCAGTCCATCTTC
GCAGCCCCGCGGTTCCCGACGCGCAGCATGGGTACCGCTCCGACCTACGC
CTCCGGCTCGGCCAAAGGCAGAAGAGGGAGGCGCAGCGGTGAAGACGAAG
CTCTGAATGGTGAACGTCAAGAGCAAGAGATGTGCTCAACAAGGCTGCAC
CACTCAGCCGTCATACGGTGTGGACGACGGCAGCACGAAGCCGGAGTACT
GCTCCCAGCACGCCAAGGCTGGAATGGTGGACGTCATGAGCAAGAGGTGT
GCCCAACAAGGCTGCCCCAAGAGACTGTACAACGCCGGTCCTGGCACCAG
AACCCCCCAGTTCTGCTCGGAGCATGCGAAGGCGGGGAGTACAGTTTCTT
GCGGGAGTCGGGCAGGGGCCGGGAGTGGAGGTGCGGAGTCAAACGCGGAT
CGCAACCTACGCCGTATGAACGCAGCGTCAAAGCGGAAGAAACCCGTCGC
TCCATCAGCGCTGCCCGAAGCGTCTTTGGGTGACAACGGGGAGGGCGGCA
ACAAGAAGCGACTTCGTCAGGCTGGTGCACCCGCTGTGGCTCTGGCGATT
TCAGTCAAGGGAGAGGGGGCTGAAGAGCTGGACGTCGAGGCTGGCAGTCC
ATCTTCGCAGCCCCGCGGTTCCCGACGCGCAGCATGGGTACCGCTCCGAC
CTACGCCTCCGGCTCGGCCAAAGGCAGAAGAGGGAGGCGCAGCGGTGAAG
ACGAAGCTCTGA
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