mRNA_L-elsbetiae_contig6110.14669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6110.14669.1
Unique NamemRNA_L-elsbetiae_contig6110.14669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: D8LGT5_ECTSI (Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGT5_ECTSI)

HSP 1 Score: 405 bits (1042), Expect = 5.510e-137
Identity = 212/283 (74.91%), Postives = 236/283 (83.39%), Query Frame = 2 
Query:   50 LPLSWLVLGLAI-AAASVSLVSAFTAQLRTHPAQQQQSSVRMMSAGAVDGAPEPPPPRVDGPLSRRQCLASAVSAAGLVAAAAGAGARDAPRTPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDKPGDRASRSGK 895
            +P S + LG+A+ AAASV  VSAFTA L +  + +                      + DGP+SRRQCLASA+SAAGLVA AA AGAR+AP+ PPRARLPEGDTQGSDYMELGGGSKSFAKPRIRY DFKDL+ GLQYKDAKVG+GRA ++GD+VVFDW+GYTIGYNGNLFET+ GPKGGDFDK KDS RFVVG G +IPGLEEGIKGMQAGGVRQIVVPPE+GYPE DRKH+RVGPKPSTFSG RALDFVLSNPGYIDKTLLFT+KV+RVDKPGDRASRSGK
Sbjct:    1 MPRSCVALGVAMTAAASVGSVSAFTAPLSSQLSHRHXXXXXXXXXXXXXXXXXXXXXQGDGPVSRRQCLASAMSAAGLVAGAAAAGAREAPKPPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYPDFKDLDKGLQYKDAKVGAGRAVTDGDRVVFDWDGYTIGYNGNLFETNKGPKGGDFDKDKDSSRFVVGSGTIIPGLEEGIKGMQAGGVRQIVVPPELGYPEGDRKHDRVGPKPSTFSGTRALDFVLSNPGYIDKTLLFTVKVVRVDKPGDRASRSGK 283
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A7S2WEE0_9STRA (Peptidylprolyl isomerase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WEE0_9STRA)

HSP 1 Score: 211 bits (536), Expect = 3.940e-62
Identity = 113/209 (54.07%), Postives = 139/209 (66.51%), Query Frame = 2 
Query:  251 LASAVSAAGLVAAAAGAGARDAPRTPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDKPGDR 877
            +ASA+ A+  VA  A   A +  +  P A L +G  Q            ++ KPRI Y DF   ++GLQYKD + GSG AA+ GD+VV DWEGYTIGY G  FE     KGG F + KD YRFVVGK  VIP LEE ++GMQ G +RQI++PPE+GYP +D  H +VGPKP+TFSG RALDFVL N G IDKTLL  ++V RVDKPG+R
Sbjct:    2 VASALGAS--VAPRASQAAEELSKNMPMAALSDGQVQ------------AYGKPRITYPDFTLTKSGLQYKDVRAGSGSAAAVGDRVVIDWEGYTIGYYGRPFEAKGKVKGGAFSEDKDYYRFVVGKRSVIPALEEAVQGMQPGAIRQIIIPPELGYPPSDPSHSQVGPKPTTFSGERALDFVLENKGLIDKTLLINLEVKRVDKPGER 196
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: L1J2M3_GUITC (Peptidylprolyl isomerase n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J2M3_GUITC)

HSP 1 Score: 205 bits (522), Expect = 2.230e-60
Identity = 98/157 (62.42%), Postives = 118/157 (75.16%), Query Frame = 2 
Query:  395 KSFAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDK 865
            K + K +++Y DF    +GLQYKD KVG+G +  +GD+VVFDWEGYTIGY G +F+  NG KGG F    D  R V+G   VIPGLEEG+KGM+ GG+RQ+VV PE+GYPE+D  H RVGPKPSTF G RAL+FVL N G IDKTLLF IKVIR+DK
Sbjct:    7 KDYGKTKMKYPDFVATPSGLQYKDVKVGNGESPEDGDRVVFDWEGYTIGYYGRIFQAKNGVKGGAFADETDFQRCVLGSHTVIPGLEEGLKGMKVGGIRQLVVTPELGYPEDDPSHTRVGPKPSTFDGQRALNFVLFNKGLIDKTLLFNIKVIRIDK 163
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A835ZI71_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZI71_9STRA)

HSP 1 Score: 204 bits (520), Expect = 3.870e-60
Identity = 101/164 (61.59%), Postives = 117/164 (71.34%), Query Frame = 2 
Query:  401 FAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDKPGDRASRSG 892
            + KPR +Y DF +L +GLQYKD KVGSG   S GD+VV DWEGYTIGY G  F+  N  KGG F    D  RF +G G VIP L E +  M+ GGVRQI+VP E+GYPE+DR H RVGPKPSTFSG RALDFVL N G IDKTLLF +++ RVDKPG R  + G
Sbjct:    9 YGKPRAKYPDFVELPSGLQYKDIKVGSGEKPSTGDRVVIDWEGYTIGYYGRPFQLKNSVKGGAFAADTDFLRFTLGDGTVIPALNEALATMKEGGVRQIIVPNEIGYPESDRGHTRVGPKPSTFSGNRALDFVLQNKGIIDKTLLFNVELKRVDKPGQRGFKRG 172
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A835XRC4_9CHLO (Peptidylprolyl isomerase n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XRC4_9CHLO)

HSP 1 Score: 198 bits (503), Expect = 1.030e-56
Identity = 110/211 (52.13%), Postives = 139/211 (65.88%), Query Frame = 2 
Query:  233 LSRRQCLASAVSAAGLVAAAAGAGARDAPRTPPRARLPEGDTQGSDYMELGGGSKSFAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDK 865
            ++RR  LA A     L+ AAAGAG       P  +R  EG ++      L G  K + KPR+RY D+ + E+GLQY+D K G G +   GD  + DW+GYTIGY G  FE  N PKG  F   KD YRFV+G+G VIPG EE + GM+ GG+R+IVVP E+GYP  D +  R+GPKPSTF+G RALDFVLSN G IDKTLLF I+++RVD+
Sbjct:   41 MARRSLLAGAAL---LLPAAAGAG------LPAPSRATEGISKYEPMDALKG--KDYGKPRMRYKDYTETESGLQYQDLKAGDGESPQPGDLCIVDWDGYTIGYYGRPFEARNKPKGSSFAGDKDFYRFVLGEGKVIPGFEEAVSGMKPGGIRRIVVPVELGYPAEDWR--RLGPKPSTFAGDRALDFVLSNRGMIDKTLLFDIELVRVDR 238
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A5J4Z9W9_PORPP (Peptidylprolyl isomerase n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z9W9_PORPP)

HSP 1 Score: 192 bits (489), Expect = 4.180e-54
Identity = 90/172 (52.33%), Postives = 124/172 (72.09%), Query Frame = 2 
Query:  353 DTQGSDYMELGG-GSKSFAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKA-KDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVD 862
            ++   +++++ G   K + K  + Y+DF   ++GLQYKD +VG+G+   EGD+ V  WEGYTIGY G +FE     +GG FD A KD +RFV+G G  IP L+E ++ M+ GGVRQ++VPPE+GYP +D +HE+VGP+PSTFSG RALDFVL N G IDKTLL  I+++RVD
Sbjct:  105 ESMAGEFVKMEGLQGKDYGKQAMTYSDFVRTDSGLQYKDVRVGTGKQPEEGDRAVLKWEGYTIGYLGRIFEAKGKAQGGAFDSADKDYFRFVLGSGTAIPALDEAVRSMREGGVRQVIVPPELGYPASDPRHEKVGPRPSTFSGQRALDFVLENRGLIDKTLLINIQLVRVD 276
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A7S0VSM8_9CRYP (Peptidylprolyl isomerase n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0VSM8_9CRYP)

HSP 1 Score: 191 bits (484), Expect = 3.110e-53
Identity = 93/154 (60.39%), Postives = 113/154 (73.38%), Query Frame = 2 
Query:  419 RYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPP-EMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDKPGDR 877
            RY D+   E+GLQYKDAK G G +  +GD+VV DWEGYTIGY G +F+  N   GG F      YRFV+G G ++PGLEEGIKGM+ GGVRQIVVPP  + YP +D  H+RVGP+PSTF G RAL+FV+ N G IDKTLLF +K+IRVDK  D+
Sbjct:  130 RYPDYVSTESGLQYKDAKQGKGESPGDGDRVVIDWEGYTIGYYGRIFQKKNSVVGGAFADDPGYYRFVLGTGSLLPGLEEGIKGMKPGGVRQIVVPPGPLNYPIDDSGHKRVGPRPSTFDGMRALNFVMENKGLIDKTLLFNVKLIRVDKKNDK 283
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A6U4NEY8_HEMAN (Peptidylprolyl isomerase n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A6U4NEY8_HEMAN)

HSP 1 Score: 190 bits (483), Expect = 4.240e-53
Identity = 93/158 (58.86%), Postives = 116/158 (73.42%), Query Frame = 2 
Query:  407 KPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPP-EMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDKPGDR 877
            K   RY DF    +GLQ+KDAK G+G + S+GD+VV DWEGYTIGY G +F+  N   GG F      YRFV+G G ++PGL+EGI+GM+ GGVRQIVVPP E+ YP +D  H+RVGP+PSTF G RAL+FVL N G IDKTLLF +K+IRVDK  ++
Sbjct:  126 KTVARYPDFTSTPSGLQFKDAKQGTGSSPSDGDRVVIDWEGYTIGYYGRIFQKKNSVVGGAFADDPGYYRFVLGSGSLLPGLDEGIRGMKPGGVRQIVVPPGELNYPADDSGHKRVGPRPSTFDGMRALNFVLENKGLIDKTLLFNVKLIRVDKKNEQ 283
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A0G4END1_VITBC (Peptidylprolyl isomerase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4END1_VITBC)

HSP 1 Score: 182 bits (461), Expect = 2.580e-51
Identity = 94/167 (56.29%), Postives = 118/167 (70.66%), Query Frame = 2 
Query:  386 GGSKSFAKPRIRYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGP-KGGDFDKAKDSY------RFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYP-ENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVD 862
            GGS+ F K R +Y DF+   +GLQ+KD K G G   ++GD+VV DWEGYTIGY G +FE  +G  KG  F  A + Y      RFVVG G VIP ++E ++ M+ GG+RQIVVPPE+GYP E D  HE VGPKPSTFSG R+L+FVL N G +DKTLLF +K++RVD
Sbjct:    7 GGSQRFGKTRAKYPDFEQTASGLQFKDVKEGEGTPPAKGDRVVLDWEGYTIGYYGRIFEKKSGVVKGSAF--ADNVYNDPKLMRFVVGSGSVIPAIDEAVQSMKPGGIRQIVVPPEIGYPMEKDPNHEMVGPKPSTFSGQRSLNFVLENQGLVDKTLLFNLKLLRVD 171
[Close]
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Match: A0A1Z5JHP2_FISSO (Peptidylprolyl isomerase n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHP2_FISSO)

HSP 1 Score: 186 bits (471), Expect = 3.900e-51
Identity = 88/150 (58.67%), Postives = 112/150 (74.67%), Query Frame = 2 
Query:  419 RYADFKDLENGLQYKDAKVGSGRAASEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVIPGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALDFVLSNPGYIDKTLLFTIKVIRVDKP 868
            +Y DF  L +G+ Y+D  +G G  AS+GD+VV+DW GYTIGY G  F+   GP+GG FDK  D  R V+G   ++PGLEE   GMQAGGVRQ+VVP ++ YP +D KHE+VGPKPSTFSG RAL+FVL NP  +D+TLLF +KV+R+DKP
Sbjct:  151 QYEDFNKLPSGVSYRDVNLGKGPEASKGDRVVYDWSGYTIGYFGRPFQAKGGPQGGAFDKDLDYERTVLGSHQIVPGLEEAFYGMQAGGVRQVVVPYKVSYPADDLKHEKVGPKPSTFSGMRALNFVLENPR-LDRTLLFNVKVVRIDKP 299
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6110.14669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGT5_ECTSI5.510e-13774.91Peptidylprolyl isomerase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2WEE0_9STRA3.940e-6254.07Peptidylprolyl isomerase n=1 Tax=Rhizochromulina m... [more]
L1J2M3_GUITC2.230e-6062.42Peptidylprolyl isomerase n=1 Tax=Guillardia theta ... [more]
A0A835ZI71_9STRA3.870e-6061.59Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A835XRC4_9CHLO1.030e-5652.13Peptidylprolyl isomerase n=1 Tax=Edaphochlamys deb... [more]
A0A5J4Z9W9_PORPP4.180e-5452.33Peptidylprolyl isomerase n=1 Tax=Porphyridium purp... [more]
A0A7S0VSM8_9CRYP3.110e-5360.39Peptidylprolyl isomerase n=1 Tax=Hemiselmis tepida... [more]
A0A6U4NEY8_HEMAN4.240e-5358.86Peptidylprolyl isomerase n=1 Tax=Hemiselmis anders... [more]
A0A0G4END1_VITBC2.580e-5156.29Peptidylprolyl isomerase n=2 Tax=Vitrella brassica... [more]
A0A1Z5JHP2_FISSO3.900e-5158.67Peptidylprolyl isomerase n=1 Tax=Fistulifera solar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6110contigL-elsbetiae_contig6110:3638..8565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score408.7
Seed ortholog evalue2.3e-111
Seed eggNOG ortholog2880.D8LGT5
Hectar predicted targeting categorysignal peptide
GOsGO:0000413,GO:0003674,GO:0003755,GO:0003824,GO:0005488,GO:0005527,GO:0005528,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006457,GO:0006464,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009987,GO:0016020,GO:0016853,GO:0016859,GO:0018193,GO:0018208,GO:0019538,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0036211,GO:0042651,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0055035,GO:0061077,GO:0071704,GO:0097159,GO:0140096,GO:1901363,GO:1901564
EggNOG free text desc.histone peptidyl-prolyl isomerization
EggNOG OGsCOG0545@1,KOG0552@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPlastid FKBP domain protein
Ec32 orthologEc-07_005110.1
Exons5
Model size1518
Cds size855
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.9584146-UTR-L-elsbetiae_contig6110:3637..42571622816668.9584146-UTR-L-elsbetiae_contig6110:3637..4257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6110 3638..4257 -
1691683726.7283103-UTR-L-elsbetiae_contig6110:3637..42571691683726.7283103-UTR-L-elsbetiae_contig6110:3637..4257Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6110 3638..4257 -
1622816669.0304668-UTR-L-elsbetiae_contig6110:8522..85651622816669.0304668-UTR-L-elsbetiae_contig6110:8522..8565Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6110 8523..8565 -
1691683726.7980392-UTR-L-elsbetiae_contig6110:8522..85651691683726.7980392-UTR-L-elsbetiae_contig6110:8522..8565Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6110 8523..8565 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.9694054-CDS-L-elsbetiae_contig6110:4257..44431622816668.9694054-CDS-L-elsbetiae_contig6110:4257..4443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 4258..4443 -
1691683726.7399535-CDS-L-elsbetiae_contig6110:4257..44431691683726.7399535-CDS-L-elsbetiae_contig6110:4257..4443Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 4258..4443 -
1622816668.981618-CDS-L-elsbetiae_contig6110:5333..55061622816668.981618-CDS-L-elsbetiae_contig6110:5333..5506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 5334..5506 -
1691683726.7531276-CDS-L-elsbetiae_contig6110:5333..55061691683726.7531276-CDS-L-elsbetiae_contig6110:5333..5506Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 5334..5506 -
1622816668.9951215-CDS-L-elsbetiae_contig6110:6332..64451622816668.9951215-CDS-L-elsbetiae_contig6110:6332..6445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 6333..6445 -
1691683726.7628663-CDS-L-elsbetiae_contig6110:6332..64451691683726.7628663-CDS-L-elsbetiae_contig6110:6332..6445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 6333..6445 -
1622816669.005356-CDS-L-elsbetiae_contig6110:7188..74091622816669.005356-CDS-L-elsbetiae_contig6110:7188..7409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 7189..7409 -
1691683726.7716126-CDS-L-elsbetiae_contig6110:7188..74091691683726.7716126-CDS-L-elsbetiae_contig6110:7188..7409Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 7189..7409 -
1622816669.0180259-CDS-L-elsbetiae_contig6110:8360..85221622816669.0180259-CDS-L-elsbetiae_contig6110:8360..8522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 8361..8522 -
1691683726.7849188-CDS-L-elsbetiae_contig6110:8360..85221691683726.7849188-CDS-L-elsbetiae_contig6110:8360..8522Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6110 8361..8522 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6110.14669.1prot_L-elsbetiae_contig6110.14669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6110 4258..8522 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6110.14669.1

>prot_L-elsbetiae_contig6110.14669.1 ID=prot_L-elsbetiae_contig6110.14669.1|Name=mRNA_L-elsbetiae_contig6110.14669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=285bp
MMLPLSWLVLGLAIAAASVSLVSAFTAQLRTHPAQQQQSSVRMMSAGAVD
GAPEPPPPRVDGPLSRRQCLASAVSAAGLVAAAAGAGARDAPRTPPRARL
PEGDTQGSDYMELGGGSKSFAKPRIRYADFKDLENGLQYKDAKVGSGRAA
SEGDKVVFDWEGYTIGYNGNLFETSNGPKGGDFDKAKDSYRFVVGKGDVI
PGLEEGIKGMQAGGVRQIVVPPEMGYPENDRKHERVGPKPSTFSGYRALD
FVLSNPGYIDKTLLFTIKVIRVDKPGDRASRSGK*
back to top

mRNA from alignment at L-elsbetiae_contig6110:3638..8565-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6110.14669.1 ID=mRNA_L-elsbetiae_contig6110.14669.1|Name=mRNA_L-elsbetiae_contig6110.14669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4928bp|location=Sequence derived from alignment at L-elsbetiae_contig6110:3638..8565- (Laminarionema elsbetiae ELsaHSoW15)
ACGACGAGGCCTGGACAACGGGGTACGGTTGACATTGCTGCCTATGATGC
TACCTCTCTCCTGGCTTGTGCTTGGCTTGGCCATAGCAGCCGCGTCGGTC
AGTTTGGTGTCTGCCTTCACGGCACAGCTTCGGACACACCCTGCGCAACA
GCAGCAATCGTCTGTACGCATGATGAGTGCTGGAGCAGTAGACGGCGCAC
CTGAGGTGGGGGGATTCCTGCAGCAAAAGTGTAGTTTACTGCAGAGTTGG
TGACGATTCCAATTGGCATCTGTATGACATTGGCTGTGCGGGGAGCAAGT
GCAGCAGTTCATTTCTCTCTGAGTTGCTCTCGCTCAGGGGTTCAGGAGCA
ACGTGCATGATCAGAAGTCATCCGACGAGCGACCCATTTGTACAGGATTC
GTAGCGCCAGCAATGAGGACCCGCATGTTCCCCAAGGTACACGTTGTTAT
TCAGTGACATGGCAAGCCCCTCGTCGTATAGTTCTGTGCGGACAGCTGTC
GAATGCATATGGCATGTGAAAGCGCGACCGTCAGCCGATGCGGTTCAACT
TGCAATCCGCGGTACATCTTTCGACGAGTGCATCAGCGATCAGCGAGCAG
CGAGCAAACACCCCGCATCCCTTTGGCGCAGCAACTTCCTCCAATCCTCC
GATGCAACGTCTCCCTTCCACTGCACCCCCTAGTTCTCCGCATTTGTATA
TGTATTCACCGCACACACACGTCCTGCGTAATTTGGCAGACCCCCAAAGC
AGGATCCAGCAGGAGAGAGAGAGAGAGAGCGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGTCCCTGCTGGCTTACTACTGTCGGTGAAG
GCATTGTATATGTGACACGGCTAGGATGGTTGACTTGTTTTCACAGCTCG
GGCTTGCTCAGGCCCCAGCAGTACCCTTCGAAACCTTTCCTTTCTCAGCC
ACTTCTCTGGGTTGATATATCTTACAAGCACATGCCCAGAGAAGCTCTCC
CCACTCGTCCCGTGGTAGTAGTGGTGGACTCGAGGGTCCCGAGTCAGTCG
GGGGTCTACATACATACGAGTATGCACGGCTATGTGCGAGCGCACACACT
TACTCTGGCGAACCCCTCGCTCCTCCCTTACCAACCGCTATGTATCTTTA
TCCCAGCCGCCGCCGCCGCGAGTGGACGGCCCGCTCAGCCGGCGGCAGTG
CCTCGCTTCCGCTGTGTCCGCGGCTGGGCTAGTGGCGGCGGCGGCGGGAG
CGGGGGCGCGCGATGCGCCCAGGACGCCGCCCAGGGCCCGCTTGCCGGAA
GGAGACACTCAGGGCTCCGACTACATGGAACTTGGTGGAGGGAGCAAGAG
CTTCGCGAAGCCGCGCATCCGCTACGCGTGAGAAAATTGTTTCTGTGTGC
CATGCGTGTATCTATGCCATTCGTACATGCATAGGTACACATATGTGTGT
ACATGCGCTGTCTCCCCCTCCTGTGCGTGTGGATTTATTTGCGGGGGGGC
TAGAGCAGTGTTGTTTGAAGAGCAGCCCTTTCGGGCGGGGTCGTCTGGTG
CTATGTTAGACAACGAAACAGTCTCAACTCAACTTTAGGGAATAATATCT
ATCTAGGTGCCCAGACCGTCGTGCCCGGGGGGGGGGAGAGAACCAGCCGT
TTGGAACTCACCTCAGGTTGCGGATTCGTTCGATTTCTGCACCCCCCGGC
GTTCAGAGACCCCTTTGCGTCACCAGGGGTAGAATCGCACACGTACACAC
ATCAGATGTAGATATGTGCGTGTACCATGCCGTGCAGAAACGTACCATGC
CGTGCAGAAACCGCTCTTCGAATGCGCCAACAACACAGCCGGCGGCAACC
TTCTTCCCCGTCGGTGGGCGTTCGTAAATGGTGACAACACGTCAAGGCCA
ACGTCGTCCTCATTATGTTTCTACGCTAGTTCACATAGAGCAGGTCAACA
ACAAACACACACACACAGATAACGCGCAAGTCCCCAACATGTAAGATGAT
GCGCTCGCGGGTCCATCGCCACCACCCTGCTCCCTTCCTCGCGCGTGCTC
CGCGCGCAACGCTGCTTGCTACACCCACCCACCCACCCACCCACCGAACC
CCTCGACGTGATAAAAAAAGAGATTTCAAAGACCTGGAGAACGGTCTGCA
GTACAAGGACGCCAAGGTCGGCTCAGGAAGAGCAGCCTCGGAGGGAGACA
AAGTCGTGTTCGACTGGGAGGGATACACGATCGGTGAGAAAAGAGGCTCC
GTAGAATCAAACCCCGGGGAGGAACTGTGGGATGGTGAGAGCAATCGTAT
CCCGGATCAAGTTGCCCGGGTTTGCAGGGTTGGGGCAGGGGTCAGGCGAT
GGTTCTCTTTCACCCGGGTCTGGTCTGACGATGAGTGCGCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCGCCTCTCCCTTGATCCGTCTTTCGCTCGACTACGTCCNNNNNNNNNNG
GGGTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGCTTTTTCCCCCGGG
CGGGGGCTGCGGGGGGGGGGCCCCCCCCCCCCCCCCCCCCCTCTCTCCCC
TTCCGACGGATGCTGTCGCGACGATTTCCCTGTATGTAGGTACATGCGTA
GGTTTCGCGACCAGCTAGCTCAACCTGTCGTGTGTATTCCCCCTCGGCCG
CCGTTTTGTACGGCCGATGGAAGAGACGCAAATATCAGCACGCACGTGCA
GCAGTTGAAATCGTTTTTTTTTTTATTGTTGCTGCACTTTGGCTGAAATA
TTTCCCTTTTTTTTTCGGCCGGTGAAGCGGTCAAGGATACAATGAACGGT
ATTTATTCAACACCCATACACGCAGGTGCCCGCTGGCAATGAGTTTTTCC
GTTGGCCTGCCCGTCATCGCAGCCTGTACCCAAGTACCAAGTAGGCAAAC
ACACATACACATATGTATACACGCGCGTGCATGCACGCAGACGACGAATA
AGCCAAAAATGGGAGAACACAAAAAAAAAATGCACGCGCATACCCACCTT
GGACCGCAGGCTACAACGGAAACCTGTTCGAGACGAGCAACGGGCCGAAG
GGGGGAGACTTTGACAAAGCAAAGGACTCGTATCGCTTTGTTGTCGGCAA
GGGGGACGTCATCCCGGGGCTCGAGGAGGGCATCAAGGGAATGCAGGCCG
GGGGCGTGCGGCAAATTGTTGTGCCTCCTGAGGTACGTAAATATGTTGTG
TGCAGAGAGCGTCGGGCGTCTCGTCTACCATGCCACAGCAGCTGTGTGGT
TGCCGAAGGGTGTCAAATCGTGCTGCGTGCTCGTTCGTTTTGTGTTTTTG
GAGTCTTGCTACACCCTCCGTTTATTGTGGGGCTTCAGTTGCGTCTCGAT
TTTTACTGCTGTTGGGTGTTTTGGCTCGCCTGCGTGTCTCATCTCACCCT
CGCAACCTCTCAAGTCCTAAATAGTGCGCGTTTCTCTCCGCCACCAACAG
CGATGCCTGCCTGCTGACCCCACATACTCCTCTAATGTTTGGTGCCGCGT
GACGTGGTAGGGTCGCCGTACGACCGGAACCCATCCGTGAGTTTTTATGT
TTACATACATACTTGATGTACGCAAGACCCATGCCGAAGTGCAAGCAAGC
CCCAAGAGCGATGCTCTGTCGGCTGCCACACCAATGTAGAAAGCCACGAG
ATTATTATATGCTCTCCTTCCTTTCGCTCCTTTGCATCCCGAGCACCCCA
ACGTTTGGAGACTGGAGCAACGTGTTTTGAGGGATATGAACGATGCTCAT
CCAACGTTTCGAGACTGGAGCAGCGTGTTTGAGTGATATGAACGATGCTC
AATCGTCCCACGACAGGGCGATAGATCGCCGAGTGGTTCGCCCCACAAGC
GATTCTTAGCATGCAAACGTGGTACTGCCTTTGGTGTGGCTCGCCGAAGC
AAAGGAAGCACCTCACGGCGCCCCGCGCTCTGTGCGGAACGCACGGGACC
CATATTGTAGAGGTGCCGAGGGCTGCTGTTGTGTAAGGCTTCATACTTGC
GGCACAGCTAACTCACCCCCCCCCGCCACACGCCCGTTGCGCCAACCACC
GCGGCATCTGTGCGGAAACCAGATGGGCTACCCCGAGAACGACCGAAAGC
ACGAGAGGGTGGGGCCGAAGCCATCGACCTTCTCGGGGTACCGCGCTCTC
GATTTTGTGCTGAGCAACCCGGGGTACATCGATAAGACCTTACTCTTCAC
CATCAAGGTCATCCGCGTAGACAAGCCTGGAGACAGGGCCTCTCGCTCGG
GGAAGTAACTAATTGTGTGCTAGTTAGATGTCGGCAGCATGTGTTCTCAG
GGCATGGTTTTCGTGTTCTGTTGCGGTGTCGAATGGCATGCACCATTCCT
ATGTACTACGTCAAGGGGTGGAATTCAGCGAGTGCCTTCTACTCGAGTGT
TTTTTTTGGGAGGGAGGTATGGGGTGGTTTGTAGGCTGTTTTTTTTCACC
TTCAATAGATGATGTGGGCGGTATAATACACTCCCACGAGCATGTATGTA
TGTATGTGCTGCCGTTTCCCTCCACCCAGGAATCGAGACGGGTAAAAACC
TGTCTTCTCTAAACTTTGCTGTTATCATTTCACGCGGCCATGCCAACGGT
ACCGAGAGAAAAGCATATACATATCTAGATTAAAGTATGCGAATAAAAGT
GCTATTTCGTAGGCCCAAAGGAAGAAGCGGGGGATCCGTGGGCAGGATGG
GGGGGGGGGTTAACTGGCGAAACTGAGGAATGGAGTATCACTTCATTGGA
CGAGCAAGGCCTGTGTGTTCGGTCGATCTAAGGCAGCGCAGGCAGCGCAA
CGGATTCTTTGGTAGAGAGAGGCATATCATATTTGCAAATATTTATGTAG
TCAGGTGGAACGAGCACGCATTCAATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6110:3638..8565-

>mRNA_L-elsbetiae_contig6110.14669.1 ID=mRNA_L-elsbetiae_contig6110.14669.1|Name=mRNA_L-elsbetiae_contig6110.14669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1710bp|location=Sequence derived from alignment at L-elsbetiae_contig6110:3638..8565- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGCTACCTCTCTCCTGGCTTGTGCTTGGCTTGGCCATAGCAGCCGC
GTCGGTCAGTTTGGTGTCTGCCTTCACGGCACAGCTTCGGACACACCCTG
CGCAACAGCAGCAATCGTCTGTACGCATGATGAGTGCTGGAGCAGTAGAC
GGCGCACCTGAGATGATGCTACCTCTCTCCTGGCTTGTGCTTGGCTTGGC
CATAGCAGCCGCGTCGGTCAGTTTGGTGTCTGCCTTCACGGCACAGCTTC
GGACACACCCTGCGCAACAGCAGCAATCGTCTGTACGCATGATGAGTGCT
GGAGCAGTAGACGGCGCACCTGAGCCGCCGCCGCCGCGAGTGGACGGCCC
GCTCAGCCGGCGGCAGTGCCTCGCTTCCGCTGTGTCCGCGGCTGGGCTAG
TGGCGGCGGCGGCGGGAGCGGGGGCGCGCGATGCGCCCAGGACGCCGCCC
AGGGCCCGCTTGCCGGAAGGAGACACTCAGGGCTCCGACTACATGGAACT
TGGTGGAGGGAGCAAGAGCTTCGCGAAGCCGCGCATCCGCTACGCCCGCC
GCCGCCGCGAGTGGACGGCCCGCTCAGCCGGCGGCAGTGCCTCGCTTCCG
CTGTGTCCGCGGCTGGGCTAGTGGCGGCGGCGGCGGGAGCGGGGGCGCGC
GATGCGCCCAGGACGCCGCCCAGGGCCCGCTTGCCGGAAGGAGACACTCA
GGGCTCCGACTACATGGAACTTGGTGGAGGGAGCAAGAGCTTCGCGAAGC
CGCGCATCCGCTACGCAGATTTCAAAGACCTGGAGAACGGTCTGCAGTAC
AAGGACGCCAAGGTCGGCTCAGGAAGAGCAGCCTCGGAGGGAGACAAAGT
CGTGTTCGACTGGGAGGGATACACGATCGAGATTTCAAAGACCTGGAGAA
CGGTCTGCAGTACAAGGACGCCAAGGTCGGCTCAGGAAGAGCAGCCTCGG
AGGGAGACAAAGTCGTGTTCGACTGGGAGGGATACACGATCGGCTACAAC
GGAAACCTGTTCGAGACGAGCAACGGGCCGAAGGGGGGAGACTTTGACAA
AGCAAAGGACTCGTATCGCTTTGTTGTCGGCAAGGGGGACGTCATCCCGG
GGCTCGAGGAGGGCATCAAGGGAATGCAGGCCGGGGGCGTGCGGCAAATT
GTTGTGCCTCCTGAGGCTACAACGGAAACCTGTTCGAGACGAGCAACGGG
CCGAAGGGGGGAGACTTTGACAAAGCAAAGGACTCGTATCGCTTTGTTGT
CGGCAAGGGGGACGTCATCCCGGGGCTCGAGGAGGGCATCAAGGGAATGC
AGGCCGGGGGCGTGCGGCAAATTGTTGTGCCTCCTGAGATGGGCTACCCC
GAGAACGACCGAAAGCACGAGAGGGTGGGGCCGAAGCCATCGACCTTCTC
GGGGTACCGCGCTCTCGATTTTGTGCTGAGCAACCCGGGGTACATCGATA
AGACCTTACTCTTCACCATCAAGGTCATCCGCGTAGACAAGCCTGGAGAC
AGGGCCTCTCGCTCGGGGAAGTAAATGGGCTACCCCGAGAACGACCGAAA
GCACGAGAGGGTGGGGCCGAAGCCATCGACCTTCTCGGGGTACCGCGCTC
TCGATTTTGTGCTGAGCAACCCGGGGTACATCGATAAGACCTTACTCTTC
ACCATCAAGGTCATCCGCGTAGACAAGCCTGGAGACAGGGCCTCTCGCTC
GGGGAAGTAA
back to top