mRNA_L-elsbetiae_contig6107.14660.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6107.14660.1
Unique NamemRNA_L-elsbetiae_contig6107.14660.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6107.14660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6107contigL-elsbetiae_contig6107:7193..9457 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size334
Cds size321
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6107.14660.1prot_L-elsbetiae_contig6107.14660.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6107 7193..9445 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.1338112-CDS-L-elsbetiae_contig6107:7192..72761622816668.1338112-CDS-L-elsbetiae_contig6107:7192..7276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 7193..7276 -
1691683726.1309164-CDS-L-elsbetiae_contig6107:7192..72761691683726.1309164-CDS-L-elsbetiae_contig6107:7192..7276Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 7193..7276 -
1622816668.1448996-CDS-L-elsbetiae_contig6107:9208..94451622816668.1448996-CDS-L-elsbetiae_contig6107:9208..9445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 9209..9445 -
1691683726.140109-CDS-L-elsbetiae_contig6107:9208..94451691683726.140109-CDS-L-elsbetiae_contig6107:9208..9445Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6107 9209..9445 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816668.1555648-UTR-L-elsbetiae_contig6107:9445..94571622816668.1555648-UTR-L-elsbetiae_contig6107:9445..9457Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6107 9446..9457 -
1691683726.1486816-UTR-L-elsbetiae_contig6107:9445..94571691683726.1486816-UTR-L-elsbetiae_contig6107:9445..9457Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6107 9446..9457 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6107.14660.1

>prot_L-elsbetiae_contig6107.14660.1 ID=prot_L-elsbetiae_contig6107.14660.1|Name=mRNA_L-elsbetiae_contig6107.14660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=107bp
MRCQRAATCYLFGTAIVHLAFDKNSLPRWFLHLGQRPMNCTMPPSERTRA
LLFEGVDQHRPSRPRTLEPYHVGCRGESLRSTRHPFLVVDALRGQECRGP
GQDLEAR
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mRNA from alignment at L-elsbetiae_contig6107:7193..9457-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6107.14660.1 ID=mRNA_L-elsbetiae_contig6107.14660.1|Name=mRNA_L-elsbetiae_contig6107.14660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2265bp|location=Sequence derived from alignment at L-elsbetiae_contig6107:7193..9457- (Laminarionema elsbetiae ELsaHSoW15)
GCCGGAGTGAGGATGCGGTGCCAACGTGCTGCCACTTGCTATCTGTTTGG
CACGGCCATCGTTCATCTGGCCTTTGACAAAAACAGTCTTCCGCGATGGT
TCCTCCATCTCGGACAGCGGCCCATGAACTGCACCATGCCGCCCTCCGAG
CGCACACGAGCCCTGCTTTTCGAGGGAGTTGACCAACATCGACCAAGCCG
ACCCAGAACGCTGGAGCCCTATCACGTGGGCTGCCGAGGAGAGTCGCTGG
TGCGTTGCCAAGATCCTGCTGAACAGGAGAGCAAACATGTAGATAGCGGT
GGATTGCGACACTAGTTGACACTACGGCTCTGCACTCACACGTGACCACT
TTGCTCAGCCAGAGGGTTGGGGTCACTTCAACCCTCTGTAGCATTCGCAC
CACTGCTGCTAGGGTTGACGAAATATGAACCCTGTAGAGGGTTCCAACCC
TGGGGAGTCCTTGAAATATGAACCCTGTAGAGGGTTCCAACCCTGGGGGG
TCCTTCATATGTATATTATGAACCCTCTGGGTTTGAACACTCTGCCGGGT
CCATATTTTCTGTACCCTCAGAGGCGTGCGAAAAGCTTCATCTGGTGTTT
GTCCGTTGTGGCAGCAACTATAAATAAAGTGCACACACTACGCGCCGTCG
CAATATACTCATCGGGGGCTATGCTTGGTTTCCCGTTGTGAACCGTACAT
GCACTGGATCCAGAATTCGCGACTCTCACAAGATTGAAGGCAAGATGAGA
ATACGAACGACACCCCAGCAAACGGAAACGGTACACAACAAACCTACCTT
CTCTCAAAACCTAAAACAAGGTTAAACAACACTTCCACTATAGAGGATGA
ACAAAACTTTTAAACTTGGATCAAGCCCGAAATACTAATTTCCTCCCGAA
GTGTGTAAAATACAAAACATGTGCTTTCCGAAAACAGTGTCCATTGTTTT
GGTCGCTTGTGGTGTTTCTTTTCAAGGGGTGCACACCATCATTATCTATT
ATGCTTATTTTTTCGGGCGGGCGTAGATCAGACAAGCGCTGTCACACGGT
TTATGCCCGTTTTTCTATGCACTATGTGCGTGTCCTTAAGTATGCTTGTG
TTGACTACGGGTGCTCGATATTGTATGTGTATTCGTCGTCTGCCCCACTG
GCCCCCGTCCTTCACGACGACTAGCTAGCTAGACGACTCAACCGGGGTCA
CTGTGTGTGTGTGTAAAGATACATAAATAGAAGCCCAGCCTGCCCATTGG
AATGTTAAGTTCCCAGAGCGACTGCTGTAGACCGACTACTGCTGTATCCC
TCCCTCACCGACCCCCGCAGCCGCAAATAGCGCAAACCCGAAGAAATTTG
AGCTGTCCTGGCTTCCCGGTCACTTTGCAAAGCAGTATTGCAGCGCTGTG
TATATATGCATGAAGGCAATGAAAGCTGACGTGGTTGTGCTGGCCATGAT
GCTGACCCAGATTGGTTTGTGTGCTGCCACATACATCTGTGTCCCCTCTA
CAAGTGTGTGCGCCGCTCGTTCTCTCTTGTTAGTGCTGCCGTGATTCATA
AATACCCTCGGAAAACGCCCCCGGGGAGGGCCGACCGAACGTGTAACCCA
ATTTTCTTCTTTGTACAACGGGGAGGGTAGGAGAAGGTCAAGCAGTAGAT
ATATATGTATGTAGATAGATAGATTCTGCAACAATCTGGTGGGGATTCAA
CCACCACTGCGCGTCCCTGGCATACAGAAGTATGTCAGTTCCCCCCGATT
GTTCATAAAATGGGGCCCCCTGGAATGCGCTTGTTTTCCCCCGTGGAGAA
AATTTTGTACTATGTACGGTGCTCAATTTCCCTGTACCGACGCCCCCCTT
TTTGGGGGGGCCTTGGACTGGTTGTCCGTCTGAATACCTAAGTACAAAGA
CGCAGACGTGCCACACACATATCCCCGACTAGGGCCGACTCGGGAAAAAC
AAATCTCACTGAACGTCAACCGTCTATTACATATACGCCCGGCCTATGCA
TGTATGAAAAAGTCGTTCCAGAAGATACAGTTAAGCCTCCTTCGCGGCCT
CCACCTATTGTGTACATGAAGTGGTAAAATACACAAATTGGCCAGCCGCA
AGTACACCAAAGTAGTTGCTTATTCCGACCCCCCGCCTCTTTTTTGCGTT
TTTTTGCCGTGTTTTTCTTTTGCCCTTGCAGCGCTCCACACGACACCCCT
TTTTGGTGGTAGATGCCCTCCGTGGGCAGGAATGCCGTGGACCAGGCCAG
GACCTAGAAGCAAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6107:7193..9457-

>mRNA_L-elsbetiae_contig6107.14660.1 ID=mRNA_L-elsbetiae_contig6107.14660.1|Name=mRNA_L-elsbetiae_contig6107.14660.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=642bp|location=Sequence derived from alignment at L-elsbetiae_contig6107:7193..9457- (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGTGCCAACGTGCTGCCACTTGCTATCTGTTTGGCACGGCCATCGT
TCATCTGGCCTTTGACAAAAACAGTCTTCCGCGATGGTTCCTCCATCTCG
GACAGCGGCCCATGAACTGCACCATGCCGCCCTCCGAGCGCACACGAGCC
CTGCTTTTCGAGGGAGTTGACCAACATCGACCAAGCCGACCCAGAACGCT
GGAGCCCTATCACGTGGGCTGCCGAGGAGAGTCGCTGATGCGGTGCCAAC
GTGCTGCCACTTGCTATCTGTTTGGCACGGCCATCGTTCATCTGGCCTTT
GACAAAAACAGTCTTCCGCGATGGTTCCTCCATCTCGGACAGCGGCCCAT
GAACTGCACCATGCCGCCCTCCGAGCGCACACGAGCCCTGCTTTTCGAGG
GAGTTGACCAACATCGACCAAGCCGACCCAGAACGCTGGAGCCCTATCAC
GTGGGCTGCCGAGGAGAGTCGCTGCGCTCCACACGACACCCCTTTTTGGT
GGTAGATGCCCTCCGTGGGCAGGAATGCCGTGGACCAGGCCAGGACCTAG
AAGCAAGACGCTCCACACGACACCCCTTTTTGGTGGTAGATGCCCTCCGT
GGGCAGGAATGCCGTGGACCAGGCCAGGACCTAGAAGCAAGA
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