mRNA_L-elsbetiae_contig6105.14657.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6105.14657.1
Unique NamemRNA_L-elsbetiae_contig6105.14657.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A6H5JUF8_9PHAE (APG6 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF8_9PHAE)

HSP 1 Score: 447 bits (1151), Expect = 3.820e-152
Identity = 229/269 (85.13%), Postives = 245/269 (91.08%), Query Frame = 1 
Query:    1 LGEETAGWVAQSGASREHQQLVAAAEKLRQRRAAAWRERELVANTRAELARCXXXXXXXXITLEARRNDVAEARQNCRNRRLLYSDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKYLPPC 807
            +GE TAGW+AQS A REH +L+    K+R+RRAA W+EREL+A  RAE    XXXXXXXX       +DVA+ARQNCR+R+ LYS+QLVSAMRMGALNDCFHIWHQGPF TINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEF+KYLIAPCGSFTKIARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQ+HDPTL+LPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKYLPPC
Sbjct:  149 IGEGTAGWMAQSEARREHHRLLGEVGKVRRRRAAVWQERELLAKARAEXXXXXXXXXXXXXXXXXXXSDVADARQNCRSRKALYSEQLVSAMRMGALNDCFHIWHQGPFGTINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFTKYLIAPCGSFTKIARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQEHDPTLKLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKYLPPC 417
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A836CRQ0_9STRA (Autophagy protein Apg6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CRQ0_9STRA)

HSP 1 Score: 198 bits (504), Expect = 7.390e-55
Identity = 110/249 (44.18%), Postives = 139/249 (55.82%), Query Frame = 1 
Query:  136 RAELARCXXXXXXXXITLEARRNDVAEARQNCRNRRLLYSDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYL-------------IAPCGSFTKIARSEDG----------------RVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKY 795
            RA+L           + LEA    + E   +CR RR L   +L         ND FHIW+ G  ATINGFRVGRL +  V W E+NAG+GQAAI L  VA AM ++FS+Y+             + P GSF+++A S                   R L++L +DE FSLFP R+ N AL+AF  C+GE G      DPTL LP+ + +  GTVGG PVALGS  E WTRA+KY LT+LKW+ AW AKY
Sbjct:  158 RADLLSARAQVDERTLCLEAEIAALGEEVASCRQRRALADARLARLSGTHVANDAFHIWYAGALATINGFRVGRLPSVQVGWPEINAGLGQAAIALTLVAGAMKLKFSRYIPTYARAEPPSRHAVLPLGSFSRMAASNXXXXXXXXXXXXXXXXXXRTLHALFSDEGFSLFPHRSLNAALRAFAQCVGEAGQRAAQRDPTLALPHRVDDAAGTVGGAPVALGSDLEAWTRAMKYTLTNLKWLLAWVAKY 406
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A7S3H0Z9_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H0Z9_9STRA)

HSP 1 Score: 169 bits (428), Expect = 2.710e-45
Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 1 
Query:  277 RMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIARSEDGRVLYSLHTDE-SFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKY 795
            ++  LND F++W+ GPFATIN F++G L    V+  E+NA +GQAA+VL  +    G+EF ++ I P GSF KI +++D R  Y L  D  SFS FP+RNFN AL  F+ C+ E+G+++  +DPTL +PY I+  E  +       G   E WT ALK+ML ++KWI AW  K+
Sbjct:  131 QINTLNDAFYVWYTGPFATINAFKLGNLVNKPVESTEINAALGQAALVLNIITSRCGIEFKQFHIVPMGSFAKILKADDRRTSYPLFIDAGSFSFFPKRNFNLALSGFMQCIHELGEYISAYDPTLSVPYKIEVSESKIADKSFVYGGDEEVWTHALKHMLANIKWIIAWYCKH 304
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A4D9D4J3_9STRA (APG6 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D4J3_9STRA)

HSP 1 Score: 167 bits (423), Expect = 7.040e-45
Identity = 89/218 (40.83%), Postives = 131/218 (60.09%), Query Frame = 1 
Query:  205 DVAEARQNCRNRRLLYSDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHV-VDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIARSE------DGRVL-----------YSLHTDES-FSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYED-WTRALKYMLTDLKWIAAWAAKYL 798
            D++E  Q      L    +L +  ++   NDCFH+WH GPFAT+NG  +GRL     V+W ++NAG+GQA ++L T+    G  F +  + P GSF+KI RS       + +V+            S + DE+  + FPRRN N AL AFL C+ E G HV+  DPT+RLP+ +++ +  +GGLP+      ED W RALKY+LTDLKW++AW+A+++
Sbjct:   63 DLSENHQATHGSELSAGARLEALTQLNVANDCFHVWHSGPFATMNGCSIGRLPAFAAVEWIDINAGLGQAILLLDTLVKQTGFRFRRLELVPFGSFSKILRSPCDLSDVETKVMPNSPRFTASNAMSFYYDEANLAFFPRRNMNAALVAFLQCVEEFGSHVEGLDPTIRLPHRVQDNK--IGGLPIVFTPGEEDTWNRALKYLLTDLKWLSAWSARHV 278
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A067BKQ5_SAPPC (APG6 domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BKQ5_SAPPC)

HSP 1 Score: 161 bits (408), Expect = 8.240e-43
Identity = 84/182 (46.15%), Postives = 114/182 (62.64%), Query Frame = 1 
Query:  253 SDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKI--ARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAK 792
            SD L    R    ND FHIWH+G F TING R+GRL +  V+W E+NA +GQA ++L TVA    + F+++     GS++K+  A S+D R  Y L++D SF  F R+ FN AL  FL C+ E G      +P+LR PY I +  G +G L +++G + E WTRALKY+LT LKW+ AW AK
Sbjct:   84 SDVLRCLQRYNVFNDTFHIWHEGSFGTINGLRLGRLPSKPVEWAEINAALGQATLLLATVASRANLNFARHTPVARGSYSKMLTAPSKDKRKEYPLYSDGSF--FQRQKFNQALVFFLECVDEAGVRAMREEPSLRFPYKIYK--GKIGELAISVGGNDEQWTRALKYLLTHLKWLLAWIAK 261
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A3M6V8C9_9STRA (APG6 domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V8C9_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.240e-41
Identity = 78/172 (45.35%), Postives = 106/172 (61.63%), Query Frame = 1 
Query:  277 RMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAK 792
            R    ND FHIWH G F TING R+GRL +  V+W E+NA +GQA ++L T+A   G EFS+  + P GSF+++       +LYS        +F RR FN A+  FL C+ + G      +P L+ PY ++   G +GGLP++LG+  E WTRALKYMLT LKW+ AW +K
Sbjct:    7 RYNVCNDVFHIWHDGLFGTINGLRLGRLPSKPVEWVEINAAMGQAVLLLATIADRAGFEFSRNRLVPRGSFSRVVN-----ILYS-----DGGMFRRRGFNQAMILFLECVEDAGRRAMKEEPLLKFPYKVER--GKIGGLPISLGND-EQWTRALKYMLTHLKWLLAWISK 165
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A7S2C4Q6_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C4Q6_9STRA)

HSP 1 Score: 155 bits (393), Expect = 1.930e-41
Identity = 79/189 (41.80%), Postives = 118/189 (62.43%), Query Frame = 1 
Query:  259 QLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIA-RSEDGRV-----LYSLHTDES--FSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYED--WTRALKYMLTDLKWIAAWAAKY 795
            QL +  +M A NDCF+IWH GPF TINGFR+GRL    V+W E+NA +GQ A++L T+     ++ S  L+ P GS++++A  +  G+V      ++L+  +    S   + +F+ AL+  L  +GE G+++ + DP  RLPY + E    +  +P+  G S  D  WTRALK+MLTD+KWI AWAAK+
Sbjct:   15 QLEATSQMNAANDCFYIWHAGPFGTINGFRLGRLPVETVEWHEINAALGQVALLLETIENETPLQLSLTLL-PLGSYSQVAIPNSQGKVDEKSKRFNLYASDGGVLSFGQKGSFHKALEYLLQIIGEAGNYISEQDPAFRLPYAVSEGGRYINNIPITYGGSNSDELWTRALKFMLTDVKWIVAWAAKH 202
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A1V9ZC45_9STRA (Beclin-1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZC45_9STRA)

HSP 1 Score: 165 bits (418), Expect = 2.460e-41
Identity = 93/233 (39.91%), Postives = 131/233 (56.22%), Query Frame = 1 
Query:  109 RERELVANTRAELARCXXXXXXXXITLEARRNDVAEARQNCRNRRLLYSDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIARS--EDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKYLP 801
            R REL+ +   ELA            ++       E R +     +  SD L    R   +ND FHIWH+G F TING R+GRL +  V+W E+NA +GQA ++L TVA    ++F+++     GS++K+  S  ++ R  Y L++D SF  F R+ FN AL  FL C+ E G      +PTLR PY I +  G +G L +++G + E WTRALKY+LT LKW+ AW AK  P
Sbjct:  385 RNRELIWSCATELASLQHQTFDEGAIVQLASTFTKEERTSVGTFAVHASDMLRCLQRYNVMNDTFHIWHEGSFGTINGLRLGRLPSKPVEWTEINAALGQATLLLATVASRANLQFARHTPVARGSYSKMLTSHGKERRREYPLYSDGSF--FQRQKFNQALVFFLECVDEAGQRAMREEPTLRFPYKIFK--GKIGELAISVGGNDEQWTRALKYLLTHLKWLLAWVAKRYP 613
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: A0A3R7EER2_9STRA (APG6 domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7EER2_9STRA)

HSP 1 Score: 159 bits (402), Expect = 3.100e-41
Identity = 82/186 (44.09%), Postives = 110/186 (59.14%), Query Frame = 1 
Query:  253 SDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKIARSEDGRVL---YSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKYLP 801
            SD L    R    ND FHIWH+GPF TING R+GRL +  V+W E+NA +GQA ++L TVA   G+ F+K++    GS++K+  ++   V    Y L  D  F    R+ FN ALK  L C+ E G      +P+LR PY I   +  +G L + +G + E WTRALKY+LT LKW+ AW AK  P
Sbjct:  152 SDMLRCLQRYNVFNDAFHIWHEGPFGTINGLRLGRLPSRPVEWAEINAALGQATLLLTTVAQRAGMVFAKHVPVARGSYSKMLVAQGSGVKRKEYPLFNDGGF--LQRQKFNTALKCLLECVDEAGRQAIVEEPSLRFPYKITRAK--IGDLSIEVGGNDEQWTRALKYLLTHLKWLLAWVAKRYP 333
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BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Match: T0RCX9_SAPDV (APG6 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0RCX9_SAPDV)

HSP 1 Score: 165 bits (418), Expect = 4.100e-41
Identity = 94/233 (40.34%), Postives = 131/233 (56.22%), Query Frame = 1 
Query:  109 RERELVANTRAELARCXXXXXXXXITLEARRNDVAEARQNCRNRRLLYSDQLVSAMRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVLVTVAMAMGVEFSKYLIAPCGSFTKI--ARSEDGRVLYSLHTDESFSLFPRRNFNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSYEDWTRALKYMLTDLKWIAAWAAKYLP 801
            R REL+ +   ELA            ++       E R +     +  SD L    R    ND FHIWH+G F TING R+GRL +  V+W E+NA +GQA ++L TVA    + F+++     GS++K+  A+S+D R  Y L++D SF  F R+ FN AL  FL C+ E G      +P+LR PY I +  G +G L +++G + E WTRALKY+LT LKW+ AW AK  P
Sbjct:  433 RNRELIWSCATELATLQRDSFDHGAVVQLLHASTKEERSSVSTFAVHASDVLRCLQRYNVFNDTFHIWHEGSFGTINGLRLGRLPSKPVEWAEINAALGQATLLLATVAGRANLTFARHTPVARGSYSKMLTAQSKDKRKEYPLYSDGSF--FQRQKFNQALVFFLECVDEAGVRAMREEPSLRFPYKIYK--GKIGELAISVGGNDEQWTRALKYLLTHLKWLLAWIAKRYP 661
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6105.14657.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUF8_9PHAE3.820e-15285.13APG6 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A836CRQ0_9STRA7.390e-5544.18Autophagy protein Apg6-domain-containing protein n... [more]
A0A7S3H0Z9_9STRA2.710e-4544.83Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9D4J3_9STRA7.040e-4540.83APG6 domain-containing protein n=2 Tax=Monodopsida... [more]
A0A067BKQ5_SAPPC8.240e-4346.15APG6 domain-containing protein n=1 Tax=Saprolegnia... [more]
A0A3M6V8C9_9STRA1.240e-4145.35APG6 domain-containing protein n=1 Tax=Peronospora... [more]
A0A7S2C4Q6_9STRA1.930e-4141.80Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A1V9ZC45_9STRA2.460e-4139.91Beclin-1 n=1 Tax=Thraustotheca clavata TaxID=74557... [more]
A0A3R7EER2_9STRA3.100e-4144.09APG6 domain-containing protein n=2 Tax=Aphanomyces... [more]
T0RCX9_SAPDV4.100e-4140.34APG6 domain-containing protein n=1 Tax=Saprolegnia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6105contigL-elsbetiae_contig6105:4248..11168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score373.2
Seed ortholog evalue6.6e-101
Seed eggNOG ortholog2880.D7FJA3
KEGG koko:K08334,ko:K19683
KEGG Pathwayko04136,ko04137,ko04138,ko04140,ko04215,ko04371,ko05167,map04136,map04137,map04138,map04140,map04215,map04371,map05167
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to nitrogen starvation
EggNOG OGsKOG2751@1,KOG2751@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko03036,ko04131
Exons5
Model size1380
Cds size537
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.8344717-UTR-L-elsbetiae_contig6105:4247..43861622816667.8344717-UTR-L-elsbetiae_contig6105:4247..4386Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6105 4248..4386 +
1691683725.8776336-UTR-L-elsbetiae_contig6105:4247..43861691683725.8776336-UTR-L-elsbetiae_contig6105:4247..4386Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6105 4248..4386 +
1622816667.8493235-UTR-L-elsbetiae_contig6105:6483..66171622816667.8493235-UTR-L-elsbetiae_contig6105:6483..6617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6105 6484..6617 +
1691683725.9028857-UTR-L-elsbetiae_contig6105:6483..66171691683725.9028857-UTR-L-elsbetiae_contig6105:6483..6617Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6105 6484..6617 +
1622816667.904746-UTR-L-elsbetiae_contig6105:10598..111681622816667.904746-UTR-L-elsbetiae_contig6105:10598..11168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6105 10599..11168 +
1691683725.9535384-UTR-L-elsbetiae_contig6105:10598..111681691683725.9535384-UTR-L-elsbetiae_contig6105:10598..11168Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6105 10599..11168 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.8605335-CDS-L-elsbetiae_contig6105:6617..66271622816667.8605335-CDS-L-elsbetiae_contig6105:6617..6627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 6618..6627 +
1691683725.9120567-CDS-L-elsbetiae_contig6105:6617..66271691683725.9120567-CDS-L-elsbetiae_contig6105:6617..6627Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 6618..6627 +
1622816667.8701851-CDS-L-elsbetiae_contig6105:9008..91551622816667.8701851-CDS-L-elsbetiae_contig6105:9008..9155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 9009..9155 +
1691683725.9224038-CDS-L-elsbetiae_contig6105:9008..91551691683725.9224038-CDS-L-elsbetiae_contig6105:9008..9155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 9009..9155 +
1622816667.881485-CDS-L-elsbetiae_contig6105:9865..100451622816667.881485-CDS-L-elsbetiae_contig6105:9865..10045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 9866..10045 +
1691683725.931447-CDS-L-elsbetiae_contig6105:9865..100451691683725.931447-CDS-L-elsbetiae_contig6105:9865..10045Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 9866..10045 +
1622816667.8933442-CDS-L-elsbetiae_contig6105:10398..105981622816667.8933442-CDS-L-elsbetiae_contig6105:10398..10598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 10399..10598 +
1691683725.9414132-CDS-L-elsbetiae_contig6105:10398..105981691683725.9414132-CDS-L-elsbetiae_contig6105:10398..10598Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6105 10399..10598 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6105.14657.1prot_L-elsbetiae_contig6105.14657.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6105 6618..10598 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6105.14657.1

>prot_L-elsbetiae_contig6105.14657.1 ID=prot_L-elsbetiae_contig6105.14657.1|Name=mRNA_L-elsbetiae_contig6105.14657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=179bp
MRMGALNDCFHIWHQGPFATINGFRVGRLNTHVVDWQEVNAGVGQAAIVL
VTVAMAMGVEFSKYLIAPCGSFTKIARSEDGRVLYSLHTDESFSLFPRRN
FNFALKAFLHCLGEVGDHVQDHDPTLRLPYHIKEKEGTVGGLPVALGSSY
EDWTRALKYMLTDLKWIAAWAAKYLPPC*
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mRNA from alignment at L-elsbetiae_contig6105:4248..11168+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6105.14657.1 ID=mRNA_L-elsbetiae_contig6105.14657.1|Name=mRNA_L-elsbetiae_contig6105.14657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6921bp|location=Sequence derived from alignment at L-elsbetiae_contig6105:4248..11168+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGGGAAGAAACAGCCGGGTGGGTGGCGCAGTCGGGGGCTAGCCGTGA
GCACCAACAGCTGGTGGCAGCGGCGGAAAAACTTCGACAGCGAAGGGCGG
CGGCGTGGCGGGAGAGAGAGCTTGTGGCAAACACGAGAGGTGTGGGATTG
TTTTGGTTTTGGGTGTCCACCGCAAAGGGCGCACAAGAGGACTGCTGCCG
ACTGTTTTTCTGCCGCGTATTTACCTCGAAGTAGGGAGAGGCGGCACCCT
TTCGGTGCAACCACGGTTCAGAGCTTTGGCAAGATGGAGCGCTTTGGAGT
TGTTGCTGTTGTTAAAAATAAACAATAAATCAAAGATGGAACCTACCCCA
CACTACATAGAGCAAGGACTCGATATGGGGTTCAAACGGTATTCCATTCA
GAGACGTAATGTTTGGCGAAGCGAGCAGAAAAACAACCTAAAATATCAGA
AGAGTTCCACATCTCCCCTGCAAAGATTTAAGATTTGCGAGGTCGGCCAA
CAAATATTCAGGCGGGTAAGGCCCGCCGTGATGCCGTAATTTTGTCATCT
ACTTCAAAATAGGAACACATCGCATTGTTGAACTAAATCAAAATGCTGGT
TTAATATATGTGGGTTAGTTGTTGTTGTTGGTGGTGTCTTGACATTACAA
ACCGTTCCGATATGTCTATCTAGTATCCCCATGGGCCCCCGCACTAATCT
AACACTGACGCGGTCGATTCCCAAAGTCACAGAATAACTCAACTCTAAAG
AGGGTTTACTGAAAAATGAAAAAATGAAAAAATGGTCCCGAACGGTCCGC
AAAAAATAAATAAAGATCAGACACAGATGGTCTGGAGCCCTCCGCTCCCC
TCTGCACGCTACTTACATATGTGAGGTGAGAACAAACCTGGGAAAACCAA
CATCACCGGACTGCCTTACCGAGAAAAAACGGGGAATATTGGTTTATCTG
TGAAACAGAGTACTAGGGGTTCCGTAACCCTAACCCTAACCACCGACCCC
CCAAAGATTCCTCGATTCCATGCTTTATCCCATATGTTTCGCCGACCAAA
AACCTGCGTAGACTACCGACATCACCAACCGCGGGGATATATTCCCTGTT
TTTTTTTTGGTACCCCAACACCGCCGGGGTGTTCCGTGCCGGGTTCTCGC
CGGTCATGCCCACCAATCTAGCCCCCTCCACCGATTAACCGCACACATGA
TACTTCGACCTCACCGTCGACGAGGGAAAGGGACGGCTGAACCCTTCTCG
CGACAAAAATCTTAGGCCAGCACCGCAGACGGGGGGAGCGGGGGCCTTGG
GGAAAGGAACCCTTCTGTGTGACCACAGTTCAGTACTCTGGCAAGATGTC
CTCGTGACAGGGAGCCCATCGAGCACTGGAAACTTGAAGAAGAAAAAAAA
AGAAAAAAAATGATACAACGAACGAGGGGAAAAAGGACGCCGGACAAGAA
ACAAGTCGAAAGTACAAACAACAAAAACACAATTAAACACAAACCCCAGA
CATAAATAAGAACCAACTAAAACACGTGATCGCTCCCCCGGCGGTGTTGA
AGGATGGTACATCAGTGGCGGGGGGGGAGATTAGTCAAGAATTCAATCCG
CAACATGTCTCGCTAATGCGTCTGCCTCCGCCCTCTTGTATGCATCGCGC
GCAGTTTCGATCGCCTCCGACTCCTTCCCCCCGTTGGTATTGCTGTTCTT
TTTCTTTCTCGTTTGCTCGCCCGTATAGTCGGCTGCATAGCCTCTTCCTC
CTTCTTGTGCTGGGAGGCCATACTGATCCTCTTAAGCTCCCCGCAGCACC
CCCTCGTGCCACGTCCTTCCCTCCTGCGCTTTGGCTGCTGTCGCCCGATC
AGCCGCGCTGGAGATTTTGAACGGCCTTATTTCAGTCGAGCGCTGGAACT
GAACGTGATGAAAAGAAAGAGGACAAAACCCCCCGAAACATTCAGTGGAA
CGCTGGTACGCGTGTGGGTACACAGTATCCGCCAGAAAAAACTTAAAAAC
GAAATAAATAGTTGTTGTTGTTGTTGTTTCTCACATTAGCTCTCTAGTCC
TAAACATCCTTGGGGGCCCGTGGTCACAAAACAAAGCACACTCGACGCCG
CGGAAGAAAAATAAAACAAAACAGTATGGTACATACGAGCCCGGTGGTAC
TAGACTGGACCCAGGGGGAGTCTTGCAAAGTATCTTCGTCAAACCCCCCT
TCCTCGCTTGTGCACGTTTTTAACACCTGTCCCCAGCGGAACTAGCGCGA
TGCCGCGCTGAGCTCCTCTCTCGGAGGATAACCCTGGAGGCTCGAAGGAA
CGACGTGGCCGAGGCTCGACAAAACTGTAGAAACAGGCGACTGCTGTACT
CGGACCAGCTCGTGAGCGCCATGAGAATGGGTAAGTGCTTGCCTGCTGTT
GGCCGGAAGCGGGGAAGGAACGAGAGCAAAGGTCGTGCGTGGGGATGCGT
GCATGCATGGGCAAGCCATCATAGCAGGCGGTTGCACACCCAAGTTTACC
CCCTTTTCTTCTGGGAGATTTATGTAGAGGACGAAGTACGCGCTGCTGCT
GTCTTGACGTGCTGTGCGGCCACCATTTTGTTATTATATAGAAGTAGTTC
GCACATCGCGGTGCCACGAAGGCCACTAGGCGCAGCTACAACTCCGGTAC
ACGCTACCGTGCCATGACAATTGGCGAGCTCAAGTGCCACAAAAATGCCG
TGGCGACCTCCCCCATTTCGGTGACTGCTTTCAGTGTGAGTAGGGCAATC
AGATCTCGGCGATGGAAATGGAGAGCCTATTTGCAAAGCAATGCCATAGC
ATGAGCGGGGGTTCGGGTCCGGAGTGATCTCGATACATATCGTCTTTTTT
TTTTGGCATTTACGTGACCGACCCCCTTCCTGTGATATTTACCATCGTCC
GCTCGAGATGAATTCCGCGCTGCCAAATCCAACCCGCCAGCCCAGTATAG
ACTACACCCTGGACAAAGCAATATTCAATACGATGTTGGAAAAACAATAC
CCCACGATCGATGGGTGCAACACATGTTCGTGGTGCAATACAGAGTGGGA
ATCGGGGAAGCAATACGTGTTGTTTAGTCAATATGCGTGCCTGATTGACA
CCCAATATATATTGTTAGGATCGATATGCGTTAGATATTGGACTGTAAGT
CCTATAGTTCTTGCAATATTGCAAGGAAGAAGGGTGCAACATGCATTGAG
CAACCAATATCTGCAAATGTGTTGTATGTCAACATGTTTTGTTGGGCAAT
ACGTGGCCCAGCAACGCAAGCAACATCTAATGAAAGAACAATATGAATCA
AGTTCAGTGTACAATACATATTGCAGGCGCAATACGATGGGCGGGCGCCC
GTGCAACATGTACTATGGTTCAATACGCTTATTGAAGTTTACAATATCAA
TATGTAACTTCAATATCATTGGCGTGCCAACACGCCCCGTAGCGCGGTTA
ATACCAATACGCCGCCCAAAAAACGATATCTGCAACATGTATTGAAATGT
CAATACTACCTCACTCCTGGTGTCCAACATGTGTTGACTGGTCAATACGT
CGGGCAAACACATGTGCAATACATATTGCCCGCACAACAAATCTACGGGA
GCCGTGTGCAAAGCGTATTGCACCTTCCAAGCAAAATTGCGACTGAGACT
CAACACGTGTTGTTGCGGCAGCACTTCCGAGATGGGCGTTTGCAATACAT
GCTCCAAGGGAGCCCAAAATGACAAACACACCCGCATACATGTTGTCCTG
GGTGTCAATGGGCCCCAACGAAACCAAGACGTATTGCAGTGGCACTATTC
TGCCGTTAAATGAGTGCAAGATGTATTGAGGTACTCCAAAAGGTGATCAT
GTCAATATAAAATATCGAAAATGTGTTGACAGCGTATTATGTTGTCCAGG
GTATTATAGGGGACTCTCAACACCCCAGATCACTGCAGGTGGCACTGGCG
AATTTTCCTGCGATACACTCTCAAGGGGACAGTTCGCCCGCAATACATAT
TTTCCACCCACCAAGAACCACACCCAGCGAAACCAATACATATTGCAGTG
ACAAACTCTGTCGTTAGCTGAGTGCAAGGTGTGATGGCGTAGTGTCTTGT
CCGGGGTGTACAAAAAAAAAGACGACTCTCAACCCCCAGGTACAGACAAT
CATATACGATATCCGGCAAGCAGTAGGCGCAGCTTGTGCTGTCACAGCAT
ATTGTATTAGTTTATACGAAGTATTGTTTTGCAACATGCACAATAGCAAT
ATGTATGTACTGTATATGTTGAATGTTGAAGTTTCAATATGCTTAGGTCG
CCAAATTTCAATATGTGTATGTTTTGCAATATGTGGAACTGACTACCAAA
ACAACACGTATTGGACATTCAATACATCAAATCCGGCCGAAGTCAATATG
TGTTGGATATACAATATTATCGGCGCCATATGTAGCAATATGTATTGAAA
ATAAGAACACTTTAGTCGCAGCTGGAACCAAGATGTATTGGGGTTTCCAA
CACTGTCTGATGGCCGACCTGCAACATATATTGCTAACCCAATACGACAT
GACTCTTCAATATGATGTATTAAATACGTATTGATCGGGTATTGTATTGT
CCAGGGTGTGGTCATCGACCTCAAGGCGCTCTTTCCCGCAGATGTACGTG
TCGTATATACATATGTATGTACGTTTGTGTCTCGATCGGCTTCAAACCGC
GAATGTTGAATTTTGGTCCCCGCCGTATTTGTTTGGATTACTTTTTTGGC
GACCACCACAGGTGCCTTGAACGACTGCTTCCACATCTGGCACCAAGGGC
CGTTCGCGACGATCAACGGGTTCAGGGTCGGCAGGCTCAACACGCATGTG
GTGGACTGGCAGGAAGTGAACGCCGGCGTGGGGCAGGCGGCCATCGTGCT
CGTCACAGGCACGTTGTTGTGTTTTTTCCACTTCCATGCAGGAGGGACCT
TGTAAATTAGGCAGTTGCATGCCTGATGAATAGAAGTCGCCCTCATCTCG
TTCTCGCTCTCAAACTCCGTGCACAGGCAGCAGCGTGTTGACCCTATATA
CCAAAATGGTCTGATTTTAAGTGGTAAATTGTGGTAAATTGCTCCTTGTA
CGGACGGTAGTTCCGGCCCCGCAAGCGGGGCTACCACAGACCAAAATGTC
AACGCTTCGCCTCCAGTTTCGGCAGGCCGGCGCGTGTTGTCCCGTCGCCG
TGGTCTCTTGGTGGCAGCACGTACCGTAGGTGACACACGATACCGCACCC
CCTGGGCATATTTTCAAAGGTCGGTTCCTCCCCAGCAAGAAGAGTGCCAG
TGCCGAAAGGCGGTGGCGTTGGAAAGATCTAGTCGAGGGCCGTCCGAAAA
CGTGTCGTTTCGTGCTGGCACCCTCTTCGTTACGGGGAGTACTGGAGCTC
TAAAAGTCGGTCCAGGGGGTGTGGTATCTTGTGTTACCTACGGTAAGTTG
TTGTCACCGACAAGCGTTAATGATGTTTTTCATTTGATACAGACATTTTA
TTCATGCTGAACTCGCTCAACATTAAACAAACCAACTTCAACGAGAGCGT
CTCCCGCTGAGCCTGTTCCCTGCTTCTGTGTTTATTGTTCGCGCGTACGC
CTGGTTTTGACACAACAGTGGCAATGGCGATGGGGGTGGAGTTCTCCAAG
TACCTGATCGCCCCCTGCGGGAGCTTCACAAAAATCGCGCGCTCGGAAGA
TGGCAGGGTGCTGTACAGCCTGCACACGGACGAGAGCTTCAGCCTCTTCC
CGAGACGCAACTTCAACTTCGCGCTCAAGGCGTTCCTGCACTGCCTAGGT
TGGCGAATGAACGCACGCTATTTTTAAGAAAAATGCAGAGCCCTAAGTTT
GGGAGTATAAACGCGTAGTGGTGTGTGTACCCGCAGCATCTCCTATGCCC
GGTCCTTGGTCACCGTCAGCAAGCACTACTATGCACCCATGTATGGCGCA
TAGCAACGGGGCTCCCACGATATCGCGTGCGGCGGCGGGAGTCCGGATGG
CATTTTTCTCGCGTTCTGTCTGCTAAATATACAATAACTGACAAAATATG
TTTCCATGTGTTCGGCTGCTGTTGTCTTTGCCATTTTATCGATGTCCGGC
ACGGGTTCTTGCTCACGTTTTGTCGGATATTGGACGATCCGATCCTCGCA
GGAGAAGTCGGAGATCACGTGCAAGACCACGACCCTACGCTGCGGCTCCC
CTACCATATCAAGGAGAAGGAAGGCACCGTCGGGGGGCTCCCGGTGGCTC
TTGGTAGCAGCTACGAGGATTGGACGCGTGCTCTTAAGTACATGCTGACG
GACCTCAAGTGGATCGCCGCGTGGGCCGCCAAGTATCTCCCTCCTTGCTG
ATCGAAACTCTGTTATGTACACGTAACCTATATATCTGGGGAAGGTTTTG
AAGCTCGGTGCTTAACTTGTATCGGACGAACGGGGTCGTAGTCGCGTAGC
GTGGGCGCTGATAGAGCAGCGCGTTGTCACCAGGTGCTCTGGGGTCTGCA
ACCTGGGCATCATCCCCGGCGAAGTCCGGAAATATCGGGCGCAGACTCTT
TATCGTGGTTCTGGCAAACAATTTATTGTTGACCAAGCTTGGTGTATGCT
TTCGGCTCTCGCGTGAAGTTCGTTTACCACCGGCCAACCAACTCATACCG
AGACACCTAGACATCAGGAGTGTGTTTCTTAGTATGCGCCTACCGTAAGT
GACGCAAGATACCTCACCCCCTGGACACATTTTCAAAGCTCGATTCCTCC
CCTGCAGGAAGGGTGCCTGTGCCGAAAGGGGACGGCGTTGGAAATATTCA
GTCGAGGGCTGTCCGAAAATATGTCGTTTGGTGCTGGCACTCTCTTCCTT
ACGGAGTGATGGAGCTCTAAAAGTTGGTCCAGGGGGTGTGGTATCTGATG
TCACCTACAGTACTTTAGGAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6105:4248..11168+

>mRNA_L-elsbetiae_contig6105.14657.1 ID=mRNA_L-elsbetiae_contig6105.14657.1|Name=mRNA_L-elsbetiae_contig6105.14657.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1074bp|location=Sequence derived from alignment at L-elsbetiae_contig6105:4248..11168+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAATGGATGAGAATGGGTGCCTTGAACGACTGCTTCCACATCTGGC
ACCAAGGGCCGTTCGCGACGATCAACGGGTTCAGGGTCGGCAGGCTCAAC
ACGCATGTGGTGGACTGGCAGGAAGTGAACGCCGGCGTGGGGCAGGCGGC
CATCGTGCTCGTCACAGGTGCCTTGAACGACTGCTTCCACATCTGGCACC
AAGGGCCGTTCGCGACGATCAACGGGTTCAGGGTCGGCAGGCTCAACACG
CATGTGGTGGACTGGCAGGAAGTGAACGCCGGCGTGGGGCAGGCGGCCAT
CGTGCTCGTCACAGTGGCAATGGCGATGGGGGTGGAGTTCTCCAAGTACC
TGATCGCCCCCTGCGGGAGCTTCACAAAAATCGCGCGCTCGGAAGATGGC
AGGGTGCTGTACAGCCTGCACACGGACGAGAGCTTCAGCCTCTTCCCGAG
ACGCAACTTCAACTTCGCGCTCAAGGCGTTCCTGCACTGCCTAGTGGCAA
TGGCGATGGGGGTGGAGTTCTCCAAGTACCTGATCGCCCCCTGCGGGAGC
TTCACAAAAATCGCGCGCTCGGAAGATGGCAGGGTGCTGTACAGCCTGCA
CACGGACGAGAGCTTCAGCCTCTTCCCGAGACGCAACTTCAACTTCGCGC
TCAAGGCGTTCCTGCACTGCCTAGGAGAAGTCGGAGATCACGTGCAAGAC
CACGACCCTACGCTGCGGCTCCCCTACCATATCAAGGAGAAGGAAGGCAC
CGTCGGGGGGCTCCCGGTGGCTCTTGGTAGCAGCTACGAGGATTGGACGC
GTGCTCTTAAGTACATGCTGACGGACCTCAAGTGGATCGCCGCGTGGGCC
GCCAAGTATCTCCCTCCTTGCTGAGAGAAGTCGGAGATCACGTGCAAGAC
CACGACCCTACGCTGCGGCTCCCCTACCATATCAAGGAGAAGGAAGGCAC
CGTCGGGGGGCTCCCGGTGGCTCTTGGTAGCAGCTACGAGGATTGGACGC
GTGCTCTTAAGTACATGCTGACGGACCTCAAGTGGATCGCCGCGTGGGCC
GCCAAGTATCTCCCTCCTTGCTGA
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