mRNA_L-elsbetiae_contig6101.14650.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6101.14650.1
Unique NamemRNA_L-elsbetiae_contig6101.14650.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6101.14650.1 vs. uniprot
Match: A0A6H5K6L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L8_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 2.260e-16
Identity = 36/60 (60.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:    1 QVDEELRSHLQFLRDNPFAALQLPLPHGAGSTTSTNPSWEVTDTLVKNNYRRLALRFHPG 180
            +V+ ELR+HL+FL+ N FAALQLPLP  A S  ++  +  ++D LVKNNYRRLAL+FHPG
Sbjct:   93 KVERELRTHLRFLKSNHFAALQLPLPRRASSDRTSRIA-RISDALVKNNYRRLALQFHPG 151
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6101.14650.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K6L8_9PHAE2.260e-1660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6101contigL-elsbetiae_contig6101:11299..11484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_010620.1
Exons1
Model size186
Cds size186
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.511133-CDS-L-elsbetiae_contig6101:11298..114841622816667.511133-CDS-L-elsbetiae_contig6101:11298..11484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6101 11299..11484 -
1691683725.700856-CDS-L-elsbetiae_contig6101:11298..114841691683725.700856-CDS-L-elsbetiae_contig6101:11298..11484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6101 11299..11484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6101.14650.1prot_L-elsbetiae_contig6101.14650.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6101 11299..11484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6101.14650.1

>prot_L-elsbetiae_contig6101.14650.1 ID=prot_L-elsbetiae_contig6101.14650.1|Name=mRNA_L-elsbetiae_contig6101.14650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=62bp
QVDEELRSHLQFLRDNPFAALQLPLPHGAGSTTSTNPSWEVTDTLVKNNY
RRLALRFHPGG*
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mRNA from alignment at L-elsbetiae_contig6101:11299..11484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6101.14650.1 ID=mRNA_L-elsbetiae_contig6101.14650.1|Name=mRNA_L-elsbetiae_contig6101.14650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=186bp|location=Sequence derived from alignment at L-elsbetiae_contig6101:11299..11484- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGATGAAGAACTTCGATCACATCTTCAGTTTCTCCGAGACAACCC
CTTTGCGGCGCTGCAGCTACCCCTTCCTCATGGTGCCGGTAGCACGACCT
CCACCAACCCAAGCTGGGAGGTAACCGACACGCTCGTGAAAAACAATTAC
CGGCGGCTCGCGTTACGCTTCCACCCCGGTGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6101:11299..11484-

>mRNA_L-elsbetiae_contig6101.14650.1 ID=mRNA_L-elsbetiae_contig6101.14650.1|Name=mRNA_L-elsbetiae_contig6101.14650.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=372bp|location=Sequence derived from alignment at L-elsbetiae_contig6101:11299..11484- (Laminarionema elsbetiae ELsaHSoW15)
CAGGTGGATGAAGAACTTCGATCACATCTTCAGTTTCTCCGAGACAACCC
CTTTGCGGCGCTGCAGCTACCCCTTCCTCATGGTGCCGGTAGCACGACCT
CCACCAACCCAAGCTGGGAGGTAACCGACACGCTCGTGAAAAACAATTAC
CGGCGGCTCGCGTTACGCTTCCACCCCGGTGGGTGACAGGTGGATGAAGA
ACTTCGATCACATCTTCAGTTTCTCCGAGACAACCCCTTTGCGGCGCTGC
AGCTACCCCTTCCTCATGGTGCCGGTAGCACGACCTCCACCAACCCAAGC
TGGGAGGTAACCGACACGCTCGTGAAAAACAATTACCGGCGGCTCGCGTT
ACGCTTCCACCCCGGTGGGTGA
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