mRNA_L-elsbetiae_contig6100.14648.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6100.14648.1
Unique NamemRNA_L-elsbetiae_contig6100.14648.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6100.14648.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 7.670e-33
Identity = 72/125 (57.60%), Postives = 83/125 (66.40%), Query Frame = 1 
Query:    1 IFGLGSVFLGFQYHASRWGSMTSSLFGLGITLAVWFPFLVTITLVIFNARHGNIGGG--PLQIPGEPT----QKQINSVAAMGIFXXXXXXXXXXXXXXXXX-KMYRFFEGAASIYTATYYRNRL 354
            +FGL S+FLGFQY ASRWGS  +SLFGLGITLA WFPFL T+ L+ F A HGN+GGG  PLQI   PT    Q +INS+A MGI                   KMYRFF+G AS Y+ATYYR+RL
Sbjct:   74 LFGLVSMFLGFQYVASRWGSKVTSLFGLGITLAAWFPFLTTVALIAFQADHGNVGGGAGPLQIL-HPTISVSQGEINSIALMGILGFWGYAGTVIGALTFLQWKMYRFFQGGASTYSATYYRSRL 197
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6100.14648.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LES9_ECTSI7.670e-3357.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6100contigL-elsbetiae_contig6100:7462..9283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.7
Seed ortholog evalue7.1e-27
Seed eggNOG ortholog2880.D8LES9
Hectar predicted targeting categorysignal anchor
EggNOG OGs2E0GM@1,2S7X1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size355
Cds size354
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6100.14648.1prot_L-elsbetiae_contig6100.14648.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6100 7462..9283 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816667.384379-CDS-L-elsbetiae_contig6100:7461..74971622816667.384379-CDS-L-elsbetiae_contig6100:7461..7497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 7462..7497 +
1691683725.6423528-CDS-L-elsbetiae_contig6100:7461..74971691683725.6423528-CDS-L-elsbetiae_contig6100:7461..7497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 7462..7497 +
1622816667.3980393-CDS-L-elsbetiae_contig6100:7875..80461622816667.3980393-CDS-L-elsbetiae_contig6100:7875..8046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 7876..8046 +
1691683725.652361-CDS-L-elsbetiae_contig6100:7875..80461691683725.652361-CDS-L-elsbetiae_contig6100:7875..8046Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 7876..8046 +
1622816667.416626-CDS-L-elsbetiae_contig6100:8345..84031622816667.416626-CDS-L-elsbetiae_contig6100:8345..8403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 8346..8403 +
1691683725.6606836-CDS-L-elsbetiae_contig6100:8345..84031691683725.6606836-CDS-L-elsbetiae_contig6100:8345..8403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 8346..8403 +
1622816667.4300425-CDS-L-elsbetiae_contig6100:9194..92831622816667.4300425-CDS-L-elsbetiae_contig6100:9194..9283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 9195..9283 +
1691683725.6717458-CDS-L-elsbetiae_contig6100:9194..92831691683725.6717458-CDS-L-elsbetiae_contig6100:9194..9283Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6100 9195..9283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6100.14648.1

>prot_L-elsbetiae_contig6100.14648.1 ID=prot_L-elsbetiae_contig6100.14648.1|Name=mRNA_L-elsbetiae_contig6100.14648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
IFGLGSVFLGFQYHASRWGSMTSSLFGLGITLAVWFPFLVTITLVIFNAR
HGNIGGGPLQIPGEPTQKQINSVAAMGIFGFYGYAGVVSSLTFLQFKMYR
FFEGAASIYTATYYRNRL
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mRNA from alignment at L-elsbetiae_contig6100:7462..9283+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6100.14648.1 ID=mRNA_L-elsbetiae_contig6100.14648.1|Name=mRNA_L-elsbetiae_contig6100.14648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1822bp|location=Sequence derived from alignment at L-elsbetiae_contig6100:7462..9283+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTTTGGCTTGGGATCGGTGTTCCTTGGATTCCAGGTGTGTTTGCGCTC
TTGTACGAAGCATTCTAGCACCAGAAGATGCAGAATATTCAACCGGCTGG
CCATGGGACGAGCCTGTTTGTACCACACTGCTTGGCGGGCGCAAAAAAAA
AGGAATATATTTTGGGCAAACTTCCGCGGCACGTTAGCCGGCGATCCCGC
GAGAGGTTGGGCAGCAGGCTACTTGTATCGCGGGTGGCCACGCATCAGCA
GTTTGTTGCGCATTTTTCTGCAAGATAACATGGTACGCCAAGCTGATCAA
GCACCGTGCCCCTGCCCCTGCCGTGTCTACTTTGTGGCCCCCGTCCTCGC
CTACATACCTACGGCTGATCGATATGGTAAATAAACGCATCACGCTTCCA
TCCACAACAAACAGTATCATGCGAGCAGGTGGGGGTCGATGACGAGCTCC
CTCTTCGGCCTGGGCATCACGCTCGCGGTGTGGTTCCCCTTCCTCGTCAC
CATCACCCTCGTAATCTTTAACGCCCGCCACGGGAACATCGGTGGCGGTC
CTCTGCAGATCCCCGGGGAGCCGACCCAGAAACAGGTGAGAAGGACGTGC
GTGTGTGTGCCGATGGAGAGATGGTGCGGAGTTCGAGAAGAGCAGCAGGC
AGGGGCAAGCTGCGCTGTGGTCTTGTTTCTGCAAGCGCCATGGAAGATGC
GCCATGGAAGACTGAAATTTCGATGCCAGGTGACCGGCAGTTTGACATGA
GCCTCGTCTCCCCTCCGGAGCCGAGAACCAGCTCCTAGCTCTGTCGCCTC
TGCAGTAATGGGAAACCATGCCCCCTTGAGGTTGACGCTTTAACAATATC
CGATGCTGCTTTTTTCGGACCCCGCTTTTGCCAGATCAACTCCGTCGCTG
CTATGGGCATCTTCGGGTTCTACGGCTACGCGGGCGTTGTAAGTTCGCAT
GTTGTCTGGTCTGTTTGGTTTGGCGCTTTCCCTGAGTATCTCACAGCCCA
GTACCTCGCTATGTCCGTACTATTCGACACTTGATGCGGCCAATTCCCGT
GGTCACAGGCTAACTTGCACCTAAATCAAAGACAAACATTGTGGGGACTC
CGCTCCCCTCTACACGCTTTTCGAGGTAAAAACGAAGCTGGACAACCCAA
CATCACCAACCGGGGGTACTGGTTTATCTAGGGTTAACATACGTTACTGT
TCGTGTACGGGTGAAGCATCTTCCCTTCCGCTCTCGATGCTTTTACGGTT
TCTGGGGAATACCTTAATTTGTCTTTCCTCTGACCAATTGCTGCCCCTCT
CCCTCCTATCCGATACTCTCCCCCCTGCCGCGGCCAATCTGCTGGCGACC
TCCCACGATTTTGACCGTGGGCTCCAACGCGAACGGCACAGGTCATCGGT
GAGTCAAAATATCATGAGGGTACCAAGCCGGCGTGAGTATGTTTTAGTTG
CGCAAGAAACTCCTGCCTGACGCTAAACTCATCCCTTCATCATCAAAATA
GGATAGCTTCGTATTCAACATCCAGAAAGGTTCCGCTTGGTGCTTGGCGT
TCCTTCACGAGAATCTACACAACAGGACCCCTCGCTGGGGCCGACATCTG
TTACCATGTAATCAGTCTAAATTTATTGTTTTATGCTTGTTCCGACGCAG
TGCCCTCATCATCTTGCCCCCGCCCCTGCCCTTTGCCCTCTTCCGGAACG
CAACTTGCTATCCCGCTCCGGCCCGTCCATCAGGTTCCCTGACGTTCCTC
CAGTTTAAGATGTACCGCTTCTTCGAGGGCGCCGCCAGCATCTACACCGC
CACGTACTACCGCAACCGCCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6100:7462..9283+

>mRNA_L-elsbetiae_contig6100.14648.1 ID=mRNA_L-elsbetiae_contig6100.14648.1|Name=mRNA_L-elsbetiae_contig6100.14648.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6100:7462..9283+ (Laminarionema elsbetiae ELsaHSoW15)
ATTTTTGGCTTGGGATCGGTGTTCCTTGGATTCCAGATTTTTGGCTTGGG
ATCGGTGTTCCTTGGATTCCAGTATCATGCGAGCAGGTGGGGGTCGATGA
CGAGCTCCCTCTTCGGCCTGGGCATCACGCTCGCGGTGTGGTTCCCCTTC
CTCGTCACCATCACCCTCGTAATCTTTAACGCCCGCCACGGGAACATCGG
TGGCGGTCCTCTGCAGATCCCCGGGGAGCCGACCCAGAAACAGTATCATG
CGAGCAGGTGGGGGTCGATGACGAGCTCCCTCTTCGGCCTGGGCATCACG
CTCGCGGTGTGGTTCCCCTTCCTCGTCACCATCACCCTCGTAATCTTTAA
CGCCCGCCACGGGAACATCGGTGGCGGTCCTCTGCAGATCCCCGGGGAGC
CGACCCAGAAACAGATCAACTCCGTCGCTGCTATGGGCATCTTCGGGTTC
TACGGCTACGCGGGCGTTGTAAATCAACTCCGTCGCTGCTATGGGCATCT
TCGGGTTCTACGGCTACGCGGGCGTTGTAAGTTCCCTGACGTTCCTCCAG
TTTAAGATGTACCGCTTCTTCGAGGGCGCCGCCAGCATCTACACCGCCAC
GTACTACCGCAACCGCCTCGTTCCCTGACGTTCCTCCAGTTTAAGATGTA
CCGCTTCTTCGAGGGCGCCGCCAGCATCTACACCGCCACGTACTACCGCA
ACCGCCTC
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