mRNA_L-elsbetiae_contig6091.14632.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6091.14632.1
Unique NamemRNA_L-elsbetiae_contig6091.14632.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6091.14632.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6091contigL-elsbetiae_contig6091:2932..3248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size319
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816665.0006247-CDS-L-elsbetiae_contig6091:2931..32461622816665.0006247-CDS-L-elsbetiae_contig6091:2931..3246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6091 2932..3246 +
1691683723.741264-CDS-L-elsbetiae_contig6091:2931..32461691683723.741264-CDS-L-elsbetiae_contig6091:2931..3246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6091 2932..3246 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6091.14632.1prot_L-elsbetiae_contig6091.14632.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6091 2932..3246 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6091.14632.1

>prot_L-elsbetiae_contig6091.14632.1 ID=prot_L-elsbetiae_contig6091.14632.1|Name=mRNA_L-elsbetiae_contig6091.14632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
VRIYAPKSLVSWWNPRAFTLLAQLETARVHTRVLLGGDRKECGNSITCSA
MLEGKPLPRRGRAWCTWRIAVFRTGRNTCYCCGLCVKARVVPFSVRCNCL
IFFRA
back to top

mRNA from alignment at L-elsbetiae_contig6091:2932..3248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6091.14632.1 ID=mRNA_L-elsbetiae_contig6091.14632.1|Name=mRNA_L-elsbetiae_contig6091.14632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=317bp|location=Sequence derived from alignment at L-elsbetiae_contig6091:2932..3248+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGAATCTACGCCCCCAAGTCTCTGGTCTCTTGGTGGAACCCGCGCGC
TTTCACGCTTTTGGCCCAACTGGAAACGGCGCGGGTACATACTCGAGTAC
TACTTGGGGGGGATAGAAAAGAATGTGGCAACTCCATCACCTGTTCGGCG
ATGCTAGAGGGGAAGCCATTGCCGAGGAGAGGAAGGGCGTGGTGCACCTG
GCGTATCGCTGTCTTTCGTACAGGTCGCAACACCTGCTACTGCTGCGGTC
TGTGTGTCAAGGCTCGGGTGGTCCCTTTTTCCGTGCGGTGCAACTGCCTT
ATTTTTTTCCGAGCCAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6091:2932..3248+

>mRNA_L-elsbetiae_contig6091.14632.1 ID=mRNA_L-elsbetiae_contig6091.14632.1|Name=mRNA_L-elsbetiae_contig6091.14632.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig6091:2932..3248+ (Laminarionema elsbetiae ELsaHSoW15)
GTGAGAATCTACGCCCCCAAGTCTCTGGTCTCTTGGTGGAACCCGCGCGC
TTTCACGCTTTTGGCCCAACTGGAAACGGCGCGGGTACATACTCGAGTAC
TACTTGGGGGGGATAGAAAAGAATGTGGCAACTCCATCACCTGTTCGGCG
ATGCTAGAGGGGAAGCCATTGCCGAGGAGAGGAAGGGCGTGGTGCACCTG
GCGTATCGCTGTCTTTCGTACAGGTCGCAACACCTGCTACTGCTGCGGTC
TGTGTGTCAAGGCTCGGGTGGTCCCTTTTTCCGTGCGGTGCAACTGCCTT
ATTTTTTTCCGAGCCGTGAGAATCTACGCCCCCAAGTCTCTGGTCTCTTG
GTGGAACCCGCGCGCTTTCACGCTTTTGGCCCAACTGGAAACGGCGCGGG
TACATACTCGAGTACTACTTGGGGGGGATAGAAAAGAATGTGGCAACTCC
ATCACCTGTTCGGCGATGCTAGAGGGGAAGCCATTGCCGAGGAGAGGAAG
GGCGTGGTGCACCTGGCGTATCGCTGTCTTTCGTACAGGTCGCAACACCT
GCTACTGCTGCGGTCTGTGTGTCAAGGCTCGGGTGGTCCCTTTTTCCGTG
CGGTGCAACTGCCTTATTTTTTTCCGAGCC
back to top