mRNA_L-elsbetiae_contig609.14629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig609.14629.1
Unique NamemRNA_L-elsbetiae_contig609.14629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig609.14629.1 vs. uniprot
Match: A0A6H5KNC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNC6_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 1.300e-36
Identity = 68/133 (51.13%), Postives = 90/133 (67.67%), Query Frame = 1 
Query:   25 QYDVDERRLGLVQTFEARLWELDVQVRQIKCIGFGQ--AGPPREMGDLTLKCSQVGVAIVQKGSDGYSPLSFRPPSRPLLLAKQVGAGHYFELNLVKEVHGAEVQELLFLSPVSIQDFDVLVQFMLSYHEWCG 417
            +Y   ++RL L+++FE RLWELDVQV+ IKCIGFGQ  A PP E   +  +CS VGV++ Q+   G++ LS  P S PLLLA+ VG+ H+  L LV    G EV+ LLFLSP++  DFD L+ FML   +WCG
Sbjct:   20 EYVAGDQRLALMRSFETRLWELDVQVQGIKCIGFGQGQAAPPSE---VIQRCSDVGVSVAQENPGGFAALSPWPVSCPLLLAESVGS-HFLRLYLVTADGGHEVRSLLFLSPITTHDFDTLIHFMLGMRQWCG 148
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig609.14629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KNC6_9PHAE1.300e-3651.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig609contigL-elsbetiae_contig609:16707..17942 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-14_005860.1
Exons2
Model size420
Cds size420
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816664.7157223-CDS-L-elsbetiae_contig609:16706..170271622816664.7157223-CDS-L-elsbetiae_contig609:16706..17027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 16707..17027 -
1691683723.5046892-CDS-L-elsbetiae_contig609:16706..170271691683723.5046892-CDS-L-elsbetiae_contig609:16706..17027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 16707..17027 -
1622816664.7259185-CDS-L-elsbetiae_contig609:17843..179421622816664.7259185-CDS-L-elsbetiae_contig609:17843..17942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 17844..17942 -
1691683723.514561-CDS-L-elsbetiae_contig609:17843..179421691683723.514561-CDS-L-elsbetiae_contig609:17843..17942Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig609 17844..17942 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig609.14629.1prot_L-elsbetiae_contig609.14629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig609 16707..17942 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig609.14629.1

>prot_L-elsbetiae_contig609.14629.1 ID=prot_L-elsbetiae_contig609.14629.1|Name=mRNA_L-elsbetiae_contig609.14629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
MAFFPEVKQYDVDERRLGLVQTFEARLWELDVQVRQIKCIGFGQAGPPRE
MGDLTLKCSQVGVAIVQKGSDGYSPLSFRPPSRPLLLAKQVGAGHYFELN
LVKEVHGAEVQELLFLSPVSIQDFDVLVQFMLSYHEWCG*
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mRNA from alignment at L-elsbetiae_contig609:16707..17942-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig609.14629.1 ID=mRNA_L-elsbetiae_contig609.14629.1|Name=mRNA_L-elsbetiae_contig609.14629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig609:16707..17942- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTTCTTCCCAGAAGTGAAGCAGTATGATGTCGACGAGAGGAGGCT
AGGTCTCGTGCAAACCTTTGAGGCAAGGCTGTGGGAGCTGGATGTGCAGG
TACAGCAAGGGTAATCATAGATATGTGCTGCTGGAAGTAAGCATTTGGCA
CGCTGCCCCCATCGCGTAGAGAACGGCAGGACCGTGTGGTTCAAATGCAT
CTGCCACCGCGCCCATTCTTAGATAGGACTTCACCATACAAACATGATTC
AACACTTGAGCCAATATATATGCACAGCAGGTACAAGTCTATCTTGTAGA
TACAAGACATGCAACAATGAACCCCGTTGGTCCGTAAAGTTACGTTGGCC
CTCGAGACCTTCCCCTTTCTTCCAATTTGAGGACGTCGTAGTGTTTCAAG
GATAAAATTCCTTCCCTCAATTTGACAAGTGAGTTTGGGAAGCCCCCATC
ATTGTCTCGGGGGGTAAAGGCTCCCCCCTTGCTCGTGTGGCATGCACTCT
GGCGAGGCATGCAACGCCGGGCACATTTTGCGCGCGCAGCCTCCCCCCTT
ATCAACTGTTGACATCATTTCCTGCCGTGGGGGGGGGTGTCTTGATTACG
AGTATTTTTCAAATATTATTTCGAGCCTGACTTTCTTAACTACCAGTTTG
TCAGCGTTGGCGCCTGCTGCTCTCTATGTATCCGTAGCTCATCATGCAGC
TTTCGTGATCTGGTATTTAGCCTGTGCATGCATTCCTATGCGTACACATC
GCAGTGTATTTTGGTGATACTACTGGTATGTAGTTTAGATATCTAGTCTT
GAGTCAAAACTTTTTGAACCAACAGAAACTCAGTTTCTCCAGAGTTTCGG
CAAATACATACGAGATACAAGTACCCTGTGTTCCTCCTCTGCTTCGCCGC
CTCTTCCGTCCACAGGTGCGCCAGATTAAGTGCATTGGATTCGGACAAGC
AGGGCCTCCACGTGAAATGGGCGACTTGACTCTGAAGTGCAGCCAGGTCG
GCGTCGCCATCGTGCAGAAAGGATCCGATGGCTACTCCCCTCTTTCTTTC
CGGCCTCCGTCGCGGCCGCTGCTGCTGGCAAAGCAGGTTGGAGCCGGGCA
TTATTTTGAGCTGAATCTCGTGAAGGAGGTTCATGGTGCGGAGGTTCAAG
AGTTGCTGTTTTTGTCTCCTGTTTCGATCCAGGATTTTGACGTTCTTGTG
CAGTTCATGCTTTCGTATCACGAGTGGTGTGGCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig609:16707..17942-

>mRNA_L-elsbetiae_contig609.14629.1 ID=mRNA_L-elsbetiae_contig609.14629.1|Name=mRNA_L-elsbetiae_contig609.14629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig609:16707..17942- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCTTTCTTCCCAGAAGTGAAGCAGTATGATGTCGACGAGAGGAGGCT
AGGTCTCGTGCAAACCTTTGAGGCAAGGCTGTGGGAGCTGGATGTGCAGA
TGGCTTTCTTCCCAGAAGTGAAGCAGTATGATGTCGACGAGAGGAGGCTA
GGTCTCGTGCAAACCTTTGAGGCAAGGCTGTGGGAGCTGGATGTGCAGGT
GCGCCAGATTAAGTGCATTGGATTCGGACAAGCAGGGCCTCCACGTGAAA
TGGGCGACTTGACTCTGAAGTGCAGCCAGGTCGGCGTCGCCATCGTGCAG
AAAGGATCCGATGGCTACTCCCCTCTTTCTTTCCGGCCTCCGTCGCGGCC
GCTGCTGCTGGCAAAGCAGGTTGGAGCCGGGCATTATTTTGAGCTGAATC
TCGTGAAGGAGGTTCATGGTGCGGAGGTTCAAGAGTTGCTGTTTTTGTCT
CCTGTTTCGATCCAGGATTTTGACGTTCTTGTGCAGTTCATGCTTTCGTA
TCACGAGTGGTGTGGCTAAGTGCGCCAGATTAAGTGCATTGGATTCGGAC
AAGCAGGGCCTCCACGTGAAATGGGCGACTTGACTCTGAAGTGCAGCCAG
GTCGGCGTCGCCATCGTGCAGAAAGGATCCGATGGCTACTCCCCTCTTTC
TTTCCGGCCTCCGTCGCGGCCGCTGCTGCTGGCAAAGCAGGTTGGAGCCG
GGCATTATTTTGAGCTGAATCTCGTGAAGGAGGTTCATGGTGCGGAGGTT
CAAGAGTTGCTGTTTTTGTCTCCTGTTTCGATCCAGGATTTTGACGTTCT
TGTGCAGTTCATGCTTTCGTATCACGAGTGGTGTGGCTAA
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