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Homology
BLAST of mRNA_L-elsbetiae_contig6076.14615.1 vs. uniprot
Match: D7G6B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6B1_ECTSI) HSP 1 Score: 312 bits (799), Expect = 4.990e-96 Identity = 181/303 (59.74%), Postives = 217/303 (71.62%), Query Frame = 1
Query: 922 PRARVREGSAAQEVKEEPEETLQPRPDEVELVQTLRKYGVTTPDAVHSLRECGNRVEVALQFALDTAKTRAENQSMDKARLESEKEKDLAAERLSLEEKALKVLGEVTSYFPKSLLLNAEDGCTIFRQFVERLSVGDGTCTQALCAFREKATTLLFLERDAFRHYPESDSQIRGYFRKLSQRIQDGVAARR--ETDGAA------------------RAETEGGSAE-DRKTNHLTTSVGEEVEALQKILYHFPKTPGGVPEAFLDVRGGEDVATLEKDGVEEDHDRSHSTRTKDPVVVTIED 1767
PRARVREG +AQEVKEEPE+ L+PRP+EV +V LR++GV TPDAVH LR+ GNRV+VAL++A++ TR EN+ D AR+ESEKEKD AAE+ E+K L VLGEV +FPKS+LLNAEDGCT FRQFVERLS GD LC FRE A TLLFLERDAFRHYPE+D QIR YF KL +RIQ+ R+ E +GA+ RA G S+E D +T LT V EEVEAL+ ILY FPKTPGGVP+AFLD + ATLE+DGVEEDHD S S R++DPVV+ ++D
Sbjct: 88 PRARVREGPSAQEVKEEPEDPLRPRPEEVGMVDMLRRHGVNTPDAVHCLRQSGNRVDVALRYAMEMKNTRHENRQTDMARVESEKEKDRAAEQQQEEDKILMVLGEVIPHFPKSILLNAEDGCTTFRQFVERLSAGD----PKLCDFRETAITLLFLERDAFRHYPENDRQIREYFGKLIERIQNHFTGRQTEEVEGASSQGGTETAKRSSSCEREPRANRCGDSSERDEETESLTARVREEVEALRSILYGFPKTPGGVPDAFLDKQAAHS-ATLERDGVEEDHDHSRSARSEDPVVIDVDD 385
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-10_001200.1 |
| Exons | 3 |
| Model size | 2227 |
| Cds size | 624 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816663.414286-UTR-L-elsbetiae_contig6076:8794..9251 | 1622816663.414286-UTR-L-elsbetiae_contig6076:8794..9251 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6076 8795..9251 - |
| 1691683722.528805-UTR-L-elsbetiae_contig6076:8794..9251 | 1691683722.528805-UTR-L-elsbetiae_contig6076:8794..9251 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6076 8795..9251 - |
| 1622816663.4608488-UTR-L-elsbetiae_contig6076:10437..11583 | 1622816663.4608488-UTR-L-elsbetiae_contig6076:10437..11583 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6076 10438..11583 - |
| 1691683722.5746906-UTR-L-elsbetiae_contig6076:10437..11583 | 1691683722.5746906-UTR-L-elsbetiae_contig6076:10437..11583 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig6076 10438..11583 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622816663.4259455-CDS-L-elsbetiae_contig6076:9251..9587 | 1622816663.4259455-CDS-L-elsbetiae_contig6076:9251..9587 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6076 9252..9587 - |
| 1691683722.543091-CDS-L-elsbetiae_contig6076:9251..9587 | 1691683722.543091-CDS-L-elsbetiae_contig6076:9251..9587 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6076 9252..9587 - |
| 1622816663.4358587-CDS-L-elsbetiae_contig6076:9975..10149 | 1622816663.4358587-CDS-L-elsbetiae_contig6076:9975..10149 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6076 9976..10149 - |
| 1691683722.553381-CDS-L-elsbetiae_contig6076:9975..10149 | 1691683722.553381-CDS-L-elsbetiae_contig6076:9975..10149 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6076 9976..10149 - |
| 1622816663.4475927-CDS-L-elsbetiae_contig6076:10323..10437 | 1622816663.4475927-CDS-L-elsbetiae_contig6076:10323..10437 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6076 10324..10437 - |
| 1691683722.5640671-CDS-L-elsbetiae_contig6076:10323..10437 | 1691683722.5640671-CDS-L-elsbetiae_contig6076:10323..10437 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig6076 10324..10437 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6076.14615.1 >prot_L-elsbetiae_contig6076.14615.1 ID=prot_L-elsbetiae_contig6076.14615.1|Name=mRNA_L-elsbetiae_contig6076.14615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=208bp
MDKARLESEKEKDLAAERLSLEEKALKVLGEVTSYFPKSLLLNAEDGCTI
FRQFVERLSVGDGTCTQALCAFREKATTLLFLERDAFRHYPESDSQIRGY
FRKLSQRIQDGVAARRETDGAARAETEGGSAEDRKTNHLTTSVGEEVEAL
QKILYHFPKTPGGVPEAFLDVRGGEDVATLEKDGVEEDHDRSHSTRTKDP
VVVTIED* back to topmRNA from alignment at L-elsbetiae_contig6076:8795..11583- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig6076.14615.1 ID=mRNA_L-elsbetiae_contig6076.14615.1|Name=mRNA_L-elsbetiae_contig6076.14615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2789bp|location=Sequence derived from alignment at L-elsbetiae_contig6076:8795..11583- (Laminarionema elsbetiae ELsaHSoW15)
TTTTTTCGTCTTGTTTTTGTCAGTGCCCCGCTGGTCGGAGGGAGCAAAAT
ACCTGCAATATACGGCCTTTTTCAGGCCGACTGGTTTTTTCTCGGGCGCT
CATGCACGCGGGGTGATGCGTGCAACAAAAAAAAAACGGACTTTAACTCG
AAAAACACCAAAGATTTAAAAAAAATGGTCGCCTGCGGCATCGGACACGG
TTAACGGTCTGTGTAAACTTAACGACCTTTACTTATGGCACAGAGGAAGT
AGAAGTACTATGTATCTACGAATGTACAGACCATTGACATTGTAGGTTAT
TGAACCTTCACCTGCCTCAATCACCCCATGCACAAAGCTTCGGTGTGATG
ATCGTGCTCATTTCCGCATGCGAACACCAGTCAGGGAAGACTTTGGTTGA
CATTTACAGAAAGACCGCCGGTCGCCGCCGTTTGGCTAGGAGAGCTCCTC
AAATCGGGCCTGCAGGGCATTACGGCTGCCACACGCCGTATTGAGTACTG
CAGAAAGGGTCTGCATGCGCATAAAACTAGAGGTTGCAAGAGGCATCGTC
GTTACACAAATGTCTGAAGTTAATCCCATACGGTGAGTGCTCCGCGGGAT
TCTCTGTGTGTTCGCGACATTCAATATTTGCGTCGGTTCTCTGGTGCGAA
TACGTTGAAAACCCGCCTGCTTCGTTTACTTTTACCCTTCCGCGCTTGGT
TTTGTTGAAAAATGTTGGTTGTATAAATACATGCCACTTCGAGCATGTGG
TCGTCGAGAGAAACCAGGCTCAGTTTGTTTATCCATGGACGATGGGCATG
GTATTGATTCCACTCTCAGTAAAGCGCGGTTTTCAATAACTAATTGCGGT
TTTCATCGCCCGTTTTGCTCCTCTTTCCCTGCGTGATAAATGGAATCTCT
CGAACTGCTTGTAAAGTTCCACCCCGCGCCCGGGTCCGCGAGGGTTCAGC
TGCGCAAGAAGTCAAAGAGGAGCCGGAAGAAACTCTCCAACCGAGGCCAG
ATGAAGTTGAGCTGGTGCAGACGCTTCGCAAGTACGGTGTGACCACGCCA
GATGCTGTGCACAGTCTACGGGAGTGTGGCAATCGAGTTGAGGTGGCACT
TCAATTTGCGCTTGACACTGCGAAAACTCGCGCCGAGAACCAATCAATGG
ACAAGGCTCGCCTGGAGTCGGAGAAGGAGAAAGATCTAGCAGCGGAACGG
CTATCACTTGAGGAGAAAGCCCTAAAGGTGCTTGGCGAAGTGACATCATA
TTTCCCGAAGGTGCGCGGTGGCTTTTCCCCTGTCTTGGAGCCTTACGTTG
ACCGCGGTCGGCAAAATGCTTCTGCTTCATACGCACTGGTTATTCCAGGA
ATCGTGGCGGAAAGCGGCGGGTTTCCCGATGAATTAACTAACCCCCCCAG
GATGTTTCCACCCCCACCCCATGTTCTCCCACAGTCGCTCCTCCTGAATG
CGGAAGATGGATGTACGATTTTTCGACAGTTTGTGGAAAGGCTTTCCGTG
GGAGATGGAACGTGCACCCAGGCATTGTGCGCGTTTCGCGAGAAGGCCAC
AACCCTTCTTTTTCTAGAGCGCGACGCCTTCCGACACTATCCTGAAAGTG
ACTCCCAGGTGTGTGTAGTGGACGTGCGGTCGGTTGTGTTCGGTCGATCA
AGGGCAAAGGTCCCCCACCATTTCGCCCGACAGGATAGGTTAGAAAGAGG
TATAAATGGCTTTATCGCTGCGGGCTAGGGACTCTGGGGGCGTCGCACCT
CGTTGAATGTACCAGGTACGATTTCGTTGATGGCGGTATAGCAGACATGC
CTTGATTTTGTCGACACTGGCTGCAGTGTCGGTAACGAATAGATCCTCGC
AAAAGCTGGCTGTCCGAAGGCCGGCCGGTTAGTTTAGGACATTTATTTGT
ACGTACAATGTTAAGTTAATTTGTGACGTGTCCGAGTTTGGCATGGCACC
GAAGTCTGCAACCATCTTTCCCTCCCCTCCTCCTGTCTCAAAACAGATCC
GAGGATATTTTCGTAAACTCAGCCAACGAATACAAGACGGCGTTGCGGCT
AGGCGCGAAACGGACGGGGCGGCTCGCGCGGAGACTGAGGGCGGGTCAGC
AGAAGATCGCAAGACGAACCACCTGACGACTAGCGTAGGAGAGGAAGTCG
AGGCTTTGCAGAAAATTTTGTACCACTTCCCGAAGACGCCAGGCGGAGTT
CCCGAAGCGTTTCTAGACGTTCGAGGGGGAGAGGATGTCGCCACGTTGGA
GAAAGATGGCGTGGAAGAAGACCACGATCGCAGCCATTCCACTCGGACCA
AGGACCCCGTTGTAGTCACCATCGAGGACTGAGCAAAGGGTGATGGCGAT
ATTTAGGCGATATATTTTGTGTCGACGTGCAGGAGCATTCCGGGGCTGCT
CCGTTGCTGTCTTTGAAGCTTTTCTTGAGGCCGGTAGTATTCGAACGACC
TGGCTGTTCTCGTGAAATATTTCGCGGAAGGCAAGAACTAGATCCTAGGG
CAGTGTTTTAGGACCGAATTCTCTCATAGATGGTGGGGGTTGTAGGCTCC
CCTTGGCTGCTTCCTTAGTTTTTTTGTAGTTATCGCAGTCTTTGTGCGTG
TATAGCCTAAGCACAAGCAACAATAATCAGTCGTGCATTTTGGATAAATG
TCCACCTACATGTATTGTCGGTCGCGTGGTATGAGGTCTCAATGTACCCC
GGGCGTAATTTCAGCTGCAACGACTCAGCTTTGCAGGTACAGCAGCATCG
GGTCACCTTGAAAACTCAGTGTCGCCTTTTCGCGGCGAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig6076:8795..11583- >mRNA_L-elsbetiae_contig6076.14615.1 ID=mRNA_L-elsbetiae_contig6076.14615.1|Name=mRNA_L-elsbetiae_contig6076.14615.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1248bp|location=Sequence derived from alignment at L-elsbetiae_contig6076:8795..11583- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACAAGGCTCGCCTGGAGTCGGAGAAGGAGAAAGATCTAGCAGCGGA
ACGGCTATCACTTGAGGAGAAAGCCCTAAAGGTGCTTGGCGAAGTGACAT
CATATTTCCCGAAGATGGACAAGGCTCGCCTGGAGTCGGAGAAGGAGAAA
GATCTAGCAGCGGAACGGCTATCACTTGAGGAGAAAGCCCTAAAGGTGCT
TGGCGAAGTGACATCATATTTCCCGAAGTCGCTCCTCCTGAATGCGGAAG
ATGGATGTACGATTTTTCGACAGTTTGTGGAAAGGCTTTCCGTGGGAGAT
GGAACGTGCACCCAGGCATTGTGCGCGTTTCGCGAGAAGGCCACAACCCT
TCTTTTTCTAGAGCGCGACGCCTTCCGACACTATCCTGAAAGTGACTCCC
AGTCGCTCCTCCTGAATGCGGAAGATGGATGTACGATTTTTCGACAGTTT
GTGGAAAGGCTTTCCGTGGGAGATGGAACGTGCACCCAGGCATTGTGCGC
GTTTCGCGAGAAGGCCACAACCCTTCTTTTTCTAGAGCGCGACGCCTTCC
GACACTATCCTGAAAGTGACTCCCAGATCCGAGGATATTTTCGTAAACTC
AGCCAACGAATACAAGACGGCGTTGCGGCTAGGCGCGAAACGGACGGGGC
GGCTCGCGCGGAGACTGAGGGCGGGTCAGCAGAAGATCGCAAGACGAACC
ACCTGACGACTAGCGTAGGAGAGGAAGTCGAGGCTTTGCAGAAAATTTTG
TACCACTTCCCGAAGACGCCAGGCGGAGTTCCCGAAGCGTTTCTAGACGT
TCGAGGGGGAGAGGATGTCGCCACGTTGGAGAAAGATGGCGTGGAAGAAG
ACCACGATCGCAGCCATTCCACTCGGACCAAGGACCCCGTTGTAGTCACC
ATCGAGGACTGAATCCGAGGATATTTTCGTAAACTCAGCCAACGAATACA
AGACGGCGTTGCGGCTAGGCGCGAAACGGACGGGGCGGCTCGCGCGGAGA
CTGAGGGCGGGTCAGCAGAAGATCGCAAGACGAACCACCTGACGACTAGC
GTAGGAGAGGAAGTCGAGGCTTTGCAGAAAATTTTGTACCACTTCCCGAA
GACGCCAGGCGGAGTTCCCGAAGCGTTTCTAGACGTTCGAGGGGGAGAGG
ATGTCGCCACGTTGGAGAAAGATGGCGTGGAAGAAGACCACGATCGCAGC
CATTCCACTCGGACCAAGGACCCCGTTGTAGTCACCATCGAGGACTGA back to top
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