mRNA_L-elsbetiae_contig6069.14607.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6069.14607.1
Unique NamemRNA_L-elsbetiae_contig6069.14607.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6069.14607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6069contigL-elsbetiae_contig6069:4680..5140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size463
Cds size318
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.6117642-UTR-L-elsbetiae_contig6069:4679..48221622816662.6117642-UTR-L-elsbetiae_contig6069:4679..4822Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6069 4680..4822 +
1691683721.9413931-UTR-L-elsbetiae_contig6069:4679..48221691683721.9413931-UTR-L-elsbetiae_contig6069:4679..4822Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6069 4680..4822 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816662.623375-CDS-L-elsbetiae_contig6069:4822..51401622816662.623375-CDS-L-elsbetiae_contig6069:4822..5140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6069 4823..5140 +
1691683721.9544818-CDS-L-elsbetiae_contig6069:4822..51401691683721.9544818-CDS-L-elsbetiae_contig6069:4822..5140Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6069 4823..5140 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6069.14607.1prot_L-elsbetiae_contig6069.14607.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6069 4823..5140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6069.14607.1

>prot_L-elsbetiae_contig6069.14607.1 ID=prot_L-elsbetiae_contig6069.14607.1|Name=mRNA_L-elsbetiae_contig6069.14607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MNIRLCSGGRQKHQQSACRTDRPTQQLARVSRKQAAADLGLLDAKNEIHH
RLRGLLVRLSEGHYDGQVILPLEPDMPHASACAATFASNRHAPHLPSPPA
LSHSIF
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mRNA from alignment at L-elsbetiae_contig6069:4680..5140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6069.14607.1 ID=mRNA_L-elsbetiae_contig6069.14607.1|Name=mRNA_L-elsbetiae_contig6069.14607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=461bp|location=Sequence derived from alignment at L-elsbetiae_contig6069:4680..5140+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTGGTTACGACACCCAGAGACACGTGCTGCGCGATGCCTTGAGAAGA
GAGGGCGGGGACAGCCGCGAACAGGCGTGCTCCTTCGTTGCATAAATTAC
GAACTATTTCAAACCAACGGAGCCCTTTTGCTGCCACCGCCGTATGAACA
TAAGGCTCTGCTCTGGCGGGCGCCAAAAGCACCAACAGAGCGCATGCCGG
ACAGACAGACCTACACAGCAGCTGGCGCGGGTCAGCAGAAAACAGGCGGC
AGCAGATCTAGGGCTTTTGGATGCCAAGAATGAAATCCATCACCGCCTTC
GAGGCTTGCTTGTCCGGCTCTCCGAAGGACACTATGACGGACAGGTGATC
CTCCCCCTCGAGCCGGACATGCCGCACGCTTCCGCCTGCGCTGCGACGTT
CGCCTCCAACCGCCACGCTCCTCATCTCCCATCGCCGCCGGCGCTGTCCC
ATTCGATCTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6069:4680..5140+

>mRNA_L-elsbetiae_contig6069.14607.1 ID=mRNA_L-elsbetiae_contig6069.14607.1|Name=mRNA_L-elsbetiae_contig6069.14607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig6069:4680..5140+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACATAAGGCTCTGCTCTGGCGGGCGCCAAAAGCACCAACAGAGCGC
ATGCCGGACAGACAGACCTACACAGCAGCTGGCGCGGGTCAGCAGAAAAC
AGGCGGCAGCAGATCTAGGGCTTTTGGATGCCAAGAATGAAATCCATCAC
CGCCTTCGAGGCTTGCTTGTCCGGCTCTCCGAAGGACACTATGACGGACA
GGTGATCCTCCCCCTCGAGCCGGACATGCCGCACGCTTCCGCCTGCGCTG
CGACGTTCGCCTCCAACCGCCACGCTCCTCATCTCCCATCGCCGCCGGCG
CTGTCCCATTCGATCTTCATGAACATAAGGCTCTGCTCTGGCGGGCGCCA
AAAGCACCAACAGAGCGCATGCCGGACAGACAGACCTACACAGCAGCTGG
CGCGGGTCAGCAGAAAACAGGCGGCAGCAGATCTAGGGCTTTTGGATGCC
AAGAATGAAATCCATCACCGCCTTCGAGGCTTGCTTGTCCGGCTCTCCGA
AGGACACTATGACGGACAGGTGATCCTCCCCCTCGAGCCGGACATGCCGC
ACGCTTCCGCCTGCGCTGCGACGTTCGCCTCCAACCGCCACGCTCCTCAT
CTCCCATCGCCGCCGGCGCTGTCCCATTCGATCTTC
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