mRNA_L-elsbetiae_contig6065.14601.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: D8LBC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBC5_ECTSI) HSP 1 Score: 171 bits (434), Expect = 4.750e-52 Identity = 86/100 (86.00%), Postives = 88/100 (88.00%), Query Frame = 3 Query: 315 MSSEASARNPELLAE--AAPAKFVNEGLLRWERERKAWLAGGCSGPVGRRRTRARTMDVDEVVDDLFSGRGGTGSLPQSVPLPQMICLLVDLWEAEGLFD 608 MSSE SARNPELL E A KFVN GLLRWERERKAWLAGG GPVGRRR RARTMDVDEV+DDLFSGRGGTG+LPQSVPLPQMI LLVDLWEAEGLFD Sbjct: 1 MSSEVSARNPELLKEEDTARPKFVNRGLLRWERERKAWLAGGTGGPVGRRRARARTMDVDEVIDDLFSGRGGTGNLPQSVPLPQMIDLLVDLWEAEGLFD 100
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A835Z3H3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3H3_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 3.200e-16 Identity = 43/91 (47.25%), Postives = 55/91 (60.44%), Query Frame = 3 Query: 360 AAPAKFVNEGLLRWERERKAWLAGGCSGPVGRRRT--------RARTMDVDEVVDDLFSGRGGTGSLPQSVPLPQMICLLVDLWEAEGLFD 608 AA A FVN+GL RWE ER+ W+ G +A+T+D D ++D +F G+G G LP+ V LPQMI LLVDLWE EGL+D Sbjct: 88 AAGAPFVNQGLRRWEAERQRWVQKGXXXXXXXXXXXXXXXXXRKAQTVDTDAIIDTIFVGKGN-GVLPRPVMLPQMINLLVDLWETEGLYD 177
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A7S1E125_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E125_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 4.270e-15 Identity = 37/82 (45.12%), Postives = 54/82 (65.85%), Query Frame = 3 Query: 372 KFVNEGLLRWERERKAWLAGGCSGPVGRRRTRARTMDVDEVVDDLFSGRGGTGS-----LPQSVPLPQMICLLVDLWEAEGL 602 +FVN+G L+WE R W++ + +T A+ +DVDE++D +FS R + S P++VPLPQM+ +LVDLWEAEGL Sbjct: 34 QFVNQGFLKWEESRNKWISS-TQESNSKTKTGAKALDVDEIIDLIFSQRWRSQSPERNQFPEAVPLPQMVDILVDLWEAEGL 114
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A7S3KWA5_9STRA (Hypothetical protein n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWA5_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 1.300e-14 Identity = 45/110 (40.91%), Postives = 59/110 (53.64%), Query Frame = 3 Query: 303 KSPIMSSEASARNPELLAEAAPAKFVNEGLLRWERERKAWLA--GGCSGPVGRRRTRARTMDVDEVVDDLF-----SGRGGTGS---LPQSVPLPQMICLLVDLWEAEGL 602 K I+ + + E+ E A FVN+GL+RWE R AWL G R A +DVD+++D LF GR G P++VPLPQM+ +L DLWEAEGL Sbjct: 82 KPAIIPDDLKNESKEMTVEEIRASFVNQGLMRWETARSAWLGERGDSDDTGSSARPTAVPLDVDKIIDVLFYASSREGRAGNAKPEKFPRNVPLPQMVDILQDLWEAEGL 191
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A7S1D623_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1D623_CYCTE) HSP 1 Score: 78.2 bits (191), Expect = 1.450e-14 Identity = 40/82 (48.78%), Postives = 49/82 (59.76%), Query Frame = 3 Query: 372 KFVNEGLLRWERERKAWLAGGCSGPVGRRRTRARTMDVDEVVDDLFSGR-----GGTGSLPQSVPLPQMICLLVDLWEAEGL 602 +F+NEGLLRWE R WL S + A +DVD ++D +FS R G S PQ VPL QM+ +LVDLWEAEGL Sbjct: 102 EFINEGLLRWEESRATWLKSDTSDSTAKA---AIPLDVDAIIDLIFSQRWRNQEGEASSFPQPVPLTQMVDILVDLWEAEGL 180
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A448ZS03_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZS03_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.800e-14 Identity = 47/96 (48.96%), Postives = 55/96 (57.29%), Query Frame = 3 Query: 363 APAKFVNEGLLRWERERKAWLAGGCSGPVGRRRTR--ARTMDVDEVVDDLFSGR---------GGTGSL-----PQSVPLPQMICLLVDLWEAEGL 602 +P FVN GLLRW+ R W +GG S P R A +DVDEV+D LF R G T SL P++VPLPQMI +L DLWEAEGL Sbjct: 55 SPDAFVNNGLLRWQAARSEWCSGGGS-PASRAPASFSAVQLDVDEVIDVLFDPRWRGGPPRTSGSTRSLVPPRFPKNVPLPQMIDVLTDLWEAEGL 149
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A4D9DFS2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DFS2_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.100e-12 Identity = 39/94 (41.49%), Postives = 52/94 (55.32%), Query Frame = 3 Query: 360 AAPAKFVNEGLLRWERERKAWLAGGCSGPVGRRRT-----------RARTMDVDEVVDDLFSGRGGTGSLPQSVPLPQMICLLVDLWEAEGLFD 608 A+ ++VN GL W R+ W + G R+ RAR++DVD V++ +FS G LPQ VPL QMI LLVD WEA+GL+D Sbjct: 43 ASREEYVNSGLKLWSERRREWQSKNNQSEGGGTRSEPPPARSQLPKRARSVDVDHVIESIFSTTGDA-RLPQPVPLSQMIDLLVDFWEADGLYD 135
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A7S2E517_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2E517_9STRA) HSP 1 Score: 72.4 bits (176), Expect = 1.220e-12 Identity = 45/104 (43.27%), Postives = 55/104 (52.88%), Query Frame = 3 Query: 375 FVNEGLLRWERERKAWLAGGC-------SGPVGRRRTRARTMDVDEVVDDLFS-------------GRGGTG--------SLPQSVPLPQMICLLVDLWEAEGL 602 FVN GL RWE ER WL+ + V +++ A +DVDEV+D +FS GRGG G S P VPLPQM+ +LVDLWEAEGL Sbjct: 49 FVNVGLQRWEVERARWLSSASLDETHPTNKSVQQQQRHAIELDVDEVIDCVFSNRWRQTAQQLPSGGRGGRGFHQKIDDGSFPCPVPLPQMVDILVDLWEAEGL 152
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: A0A7S2XR72_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XR72_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 9.870e-11 Identity = 41/99 (41.41%), Postives = 52/99 (52.53%), Query Frame = 3 Query: 375 FVNEGLLRWERERKAWLA--GGCSGPVGRRRTR-----ARTMDVDEVVDDLFSGR-----------GGT-----GSLPQSVPLPQMICLLVDLWEAEGL 602 +VN GLL WE+ RK WL G G ++ A +DVDE++D +FS R G T G+ VPLPQM+ +LVDLWEAEGL Sbjct: 26 YVNTGLLHWEKGRKHWLRKKAGSVGEEDKKEEEGEERAAINIDVDEIIDIIFSNRWRVTSPSNSLPGKTTETARGTFAHPVPLPQMVDILVDLWEAEGL 124
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Match: B7FW96_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FW96_PHATC) HSP 1 Score: 65.9 bits (159), Expect = 8.630e-10 Identity = 43/92 (46.74%), Postives = 52/92 (56.52%), Query Frame = 3 Query: 357 EAAPAKFVNEGLLRWERERKAWLAGGCSGPVGRRRTR----ARTMDVDEVVDDLFSG----RGGTGS--LPQSVPLPQMICLLVDLWEAEGL 602 EAAP F N GL WE+ R WLA R TR A+ ++VDE++D +F+ R TG P VPLPQMI +L DLWEAEGL Sbjct: 117 EAAP-DFFNYGLEFWEKSRATWLA------TNRDETRISPHAKPLEVDEIIDAIFAAPRQWRETTGPTRFPTPVPLPQMIDILQDLWEAEGL 201 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6065.14601.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6065.14601.1 >prot_L-elsbetiae_contig6065.14601.1 ID=prot_L-elsbetiae_contig6065.14601.1|Name=mRNA_L-elsbetiae_contig6065.14601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=99bp MSSEASARNPELLAEAAPAKFVNEGLLRWERERKAWLAGGCSGPVGRRRTback to top mRNA from alignment at L-elsbetiae_contig6065:6265..9638+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6065.14601.1 ID=mRNA_L-elsbetiae_contig6065.14601.1|Name=mRNA_L-elsbetiae_contig6065.14601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3374bp|location=Sequence derived from alignment at L-elsbetiae_contig6065:6265..9638+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6065:6265..9638+ >mRNA_L-elsbetiae_contig6065.14601.1 ID=mRNA_L-elsbetiae_contig6065.14601.1|Name=mRNA_L-elsbetiae_contig6065.14601.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=594bp|location=Sequence derived from alignment at L-elsbetiae_contig6065:6265..9638+ (Laminarionema elsbetiae ELsaHSoW15)back to top |