mRNA_L-elsbetiae_contig6065.14600.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6065.14600.1
Unique NamemRNA_L-elsbetiae_contig6065.14600.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A6H5KLJ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLJ2_9PHAE)

HSP 1 Score: 204 bits (519), Expect = 7.400e-65
Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQ---SIGGPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RDFTGAVTLLEFNRRSGED+TLEDTLMWLGYC+FHLGNYQRAI+AYQ   S+GG DEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL
Sbjct:   11 RDFTGAVTLLEFNRRSGEDETLEDTLMWLGYCAFHLGNYQRAIEAYQELESLGGADEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 115
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: D8LBC6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBC6_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 6.260e-62
Identity = 98/105 (93.33%), Postives = 101/105 (96.19%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQ---SIGGPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYC+FHLGNYQRAI+AYQ   S+GG DEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL
Sbjct:   28 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCAFHLGNYQRAIEAYQELESLGGADEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 132
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A836CHL9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHL9_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.160e-37
Identity = 61/106 (57.55%), Postives = 84/106 (79.25%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSI----GGPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RD+TGA+ LLEFNRRSG+DD LED L+W+GYC+FH+G YQRA++AY+ +     G  +V L++ACC+YY+Q +D+AEEAA +GP+  L+ RLL H++HK  DE KL
Sbjct:   40 RDYTGALALLEFNRRSGDDDNLEDMLLWIGYCAFHVGRYQRALEAYEEVVAIGAGGGDVHLYVACCHYYLQSYDQAEEAASRGPKGPLRTRLLLHIAHKQNDERKL 145
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A4P9W5C2_9FUNG (Uncharacterized protein n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9W5C2_9FUNG)

HSP 1 Score: 118 bits (295), Expect = 8.530e-32
Identity = 54/106 (50.94%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSI---GGPDEVT-LFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RD+TGA+TLLEFN+ +G+ D   D ++WLGY +FHLG+Y++A++AYQ       PD +  LFLAC ++++ M+ +A+E A++GP C L+NRLLFH+SHK  DE +L
Sbjct:   39 RDYTGAITLLEFNKATGKYDA--DNMLWLGYSAFHLGDYKKAMEAYQGFLQEANPDPLGHLFLACTFFFLGMYKEADEEAQRGPTCKLQNRLLFHLSHKFNDEKRL 142
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A6P8PLB5_GEOSA (Intraflagellar transport protein 56 n=1 Tax=Geotrypetes seraphini TaxID=260995 RepID=A0A6P8PLB5_GEOSA)

HSP 1 Score: 121 bits (303), Expect = 9.370e-32
Identity = 60/107 (56.07%), Postives = 80/107 (74.77%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSIG-----GPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RDFTGA+TLLEF R+ GE D  ED+ MW+GYCSFHLG+Y+R+++ Y+SI       PD V + LAC Y+++ M+ +AEEAA K P+  L+NRLLFH++HK  DE KL
Sbjct:   37 RDFTGAITLLEFKRQLGEGD--EDSDMWIGYCSFHLGDYKRSMEEYESISKREVCNPD-VWVNLACTYFFLGMYKEAEEAATKAPKSRLQNRLLFHLAHKFNDEKKL 140
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A482SUH5_9ARCH (Tetratricopeptide repeat protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUH5_9ARCH)

HSP 1 Score: 118 bits (295), Expect = 2.300e-31
Identity = 54/106 (50.94%), Postives = 80/106 (75.47%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSIGGPDEVT----LFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RD+TGA+TLLEF R   +D  ++D L+W+GYC+FHLGNY+RA +AY+ +    +V     LF+ACCY++ QM+++AE  A K PE  LK+R+LF+++H++ DENKL
Sbjct:   39 RDYTGALTLLEF-RLKCQDGDVKDLLLWIGYCAFHLGNYRRAEEAYRELLNAHDVGRILHLFIACCYFFQQMYEEAEREADKAPEDPLKSRILFNIAHRVGDENKL 143
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A0L0HE99_SPIPD (Tetratricopeptide repeat protein 26 n=3 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0HE99_SPIPD)

HSP 1 Score: 120 bits (301), Expect = 9.020e-30
Identity = 55/106 (51.89%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSIGGPDE----VTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RDFTGA+TLLEFN  +G+ D  +DTL WLGY +FHL +Y++A++ YQ++    +    V L+L CCY+++ M+ +A+E A+KGP C L+NRLLFH+SHK  DE +L
Sbjct:   39 RDFTGAITLLEFNAAAGKQD--QDTLAWLGYAAFHLSDYKKAMETYQAMLQDPKCDPLVHLYLGCCYFFLGMYREADEEAQKGPTCKLQNRLLFHLSHKFNDEKRL 142
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A2R5G680_9STRA (Intraflagellar transport protein 56 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G680_9STRA)

HSP 1 Score: 120 bits (301), Expect = 9.270e-30
Identity = 56/106 (52.83%), Postives = 79/106 (74.53%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSI----GGPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RD+TGA+ LLEFN+ +  DD   ++ MWLGYC+ HLG+Y++A++A+Q +        EV L+LA C Y++QM+D+AEE A +GP C L+NRLLFH++HK  DENKL
Sbjct:   40 RDYTGAIALLEFNQHA--DDFDAESCMWLGYCAAHLGDYKKALEAFQDLQRLGDTGKEVHLYLAICMYFLQMYDEAEEEALQGPTCGLQNRLLFHIAHKQNDENKL 143
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: UPI001CC554A2 (intraflagellar transport protein 56 isoform X4 n=2 Tax=Metatheria TaxID=9263 RepID=UPI001CC554A2)

HSP 1 Score: 117 bits (292), Expect = 1.330e-29
Identity = 56/106 (52.83%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSI----GGPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RDFTGA+TLLEF R  GE D  ED  +W+GYC+FHLG+Y+RA++ Y+S+    G   EV + LAC Y+++ M+ +AE A  K P+  L+NRLLFH++HK  DE KL
Sbjct:   44 RDFTGAITLLEFKRHVGEQD--EDADLWIGYCAFHLGDYKRALEEYESVTKEEGCNPEVWVNLACTYFFLGMYKQAETAGFKAPKSRLQNRLLFHLAHKFNDEKKL 147
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BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Match: A0A7J8HDY6_MOLMO (Intraflagellar transport protein 56 n=1 Tax=Molossus molossus TaxID=27622 RepID=A0A7J8HDY6_MOLMO)

HSP 1 Score: 114 bits (284), Expect = 1.580e-29
Identity = 54/106 (50.94%), Postives = 76/106 (71.70%), Query Frame = 1 
Query:    1 RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSIGGPD----EVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDENKL 306
            RDFTGA+TLLEF R  GE +  EDT +W+GYC+FHLG+Y+RA++ Y++    +    EV + LAC Y+++ M+ +AE A  K P+  L+NRLLFH++HK  DE KL
Sbjct:   37 RDFTGAITLLEFKRHVGEQE--EDTNLWIGYCAFHLGDYKRALEEYENATKEENCNPEVWVNLACTYFFLGMYKQAEAAGFKAPKSRLQNRLLFHLAHKFNDEKKL 140
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6065.14600.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KLJ2_9PHAE7.400e-6592.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LBC6_ECTSI6.260e-6293.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CHL9_9STRA1.160e-3757.55Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A4P9W5C2_9FUNG8.530e-3250.94Uncharacterized protein n=1 Tax=Blyttiomyces helic... [more]
A0A6P8PLB5_GEOSA9.370e-3256.07Intraflagellar transport protein 56 n=1 Tax=Geotry... [more]
A0A482SUH5_9ARCH2.300e-3150.94Tetratricopeptide repeat protein n=1 Tax=archaeon ... [more]
A0A0L0HE99_SPIPD9.020e-3051.89Tetratricopeptide repeat protein 26 n=3 Tax=Spizel... [more]
A0A2R5G680_9STRA9.270e-3052.83Intraflagellar transport protein 56 n=1 Tax=Hondae... [more]
UPI001CC554A21.330e-2952.83intraflagellar transport protein 56 isoform X4 n=2... [more]
A0A7J8HDY6_MOLMO1.580e-2950.94Intraflagellar transport protein 56 n=1 Tax=Moloss... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6065contigL-elsbetiae_contig6065:3927..4988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue6.1e-51
Seed eggNOG ortholog2880.D8LBC6
Preferred nameTTC26
KEGG koko:K19685
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000902,GO:0000904,GO:0001655,GO:0001822,GO:0002009,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007399,GO:0008150,GO:0008594,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0019953,GO:0022008,GO:0022412,GO:0022414,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030705,GO:0030990,GO:0030992,GO:0031503,GO:0031514,GO:0032501,GO:0032502,GO:0032504,GO:0032989,GO:0032991,GO:0035239,GO:0035295,GO:0035720,GO:0035735,GO:0035845,GO:0036064,GO:0039022,GO:0039023,GO:0042073,GO:0042461,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0046530,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060271,GO:0060429,GO:0060562,GO:0060993,GO:0065007,GO:0070925,GO:0071840,GO:0072001,GO:0072073,GO:0072114,GO:0072176,GO:0072178,GO:0097542,GO:0099111,GO:0120025,GO:0120031,GO:0120036,GO:0120038
EggNOG free text desc.intraciliary transport
EggNOG OGsKOG3785@1,KOG3785@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Ec32 ortholog descriptionTetratricopeptide TPR2
Ec32 orthologEc-27_004420.1
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6065.14600.1prot_L-elsbetiae_contig6065.14600.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6065 3927..4988 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.9319549-CDS-L-elsbetiae_contig6065:3926..40191622816661.9319549-CDS-L-elsbetiae_contig6065:3926..4019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6065 3927..4019 -
1691683721.3788714-CDS-L-elsbetiae_contig6065:3926..40191691683721.3788714-CDS-L-elsbetiae_contig6065:3926..4019Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6065 3927..4019 -
1622816661.9438443-CDS-L-elsbetiae_contig6065:4553..46251622816661.9438443-CDS-L-elsbetiae_contig6065:4553..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6065 4554..4625 -
1691683721.3943784-CDS-L-elsbetiae_contig6065:4553..46251691683721.3943784-CDS-L-elsbetiae_contig6065:4553..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6065 4554..4625 -
1622816661.9551153-CDS-L-elsbetiae_contig6065:4847..49881622816661.9551153-CDS-L-elsbetiae_contig6065:4847..4988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6065 4848..4988 -
1691683721.406053-CDS-L-elsbetiae_contig6065:4847..49881691683721.406053-CDS-L-elsbetiae_contig6065:4847..4988Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6065 4848..4988 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6065.14600.1

>prot_L-elsbetiae_contig6065.14600.1 ID=prot_L-elsbetiae_contig6065.14600.1|Name=mRNA_L-elsbetiae_contig6065.14600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
RDFTGAVTLLEFNRRSGEDDTLEDTLMWLGYCSFHLGNYQRAIDAYQSIG
GPDEVTLFLACCYYYMQMFDKAEEAAKKGPECALKNRLLFHVSHKLLDEN
KL
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mRNA from alignment at L-elsbetiae_contig6065:3927..4988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6065.14600.1 ID=mRNA_L-elsbetiae_contig6065.14600.1|Name=mRNA_L-elsbetiae_contig6065.14600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1062bp|location=Sequence derived from alignment at L-elsbetiae_contig6065:3927..4988- (Laminarionema elsbetiae ELsaHSoW15)
AGGGATTTCACCGGAGCGGTAACCCTGCTCGAGTTTAACCGTCGATCAGG
AGAGGACGACACTCTCGAGGACACTCTCATGTGGCTGGGATATTGCTCCT
TCCACCTCGGGAACTACCAAAGAGCCATCGACGCATACCAGGTGAAGTCT
TGACTCGCTCCAGCTCCCACGAGGGGCCGTCATACGGCGTTGGGCGACCC
CGGCCATCCTGATTTCCACCAGCACTTTACGTAGAATGCACGAAACACGC
ACCCTGCTGCGACACCCTATTTCCCTAAATATCGTCACATTTCCTCTGAG
AACGGCCATCTGGCCTAACGCCGACCGTTAAAACAACACTGCGGCGTCAT
GCAGGAACTAGAGTCGATCGGCGGTCCGGACGAGGTCACTCTGTTCCTGG
CGTGCTGCTACTACTACATGCAGATGTTTGATAAGGTGAGCTTGAAGATC
TCTTTTTACGTCCACACGTGAACACACACGTGAACAATCAGCGGGTTTCC
TGGGCACCGCAGGCCGCAGGCGGGCAGCGGAGGCCGCCGCCAACAACACT
AGGTTGGCGTACATACCTCGACACAAACAACAGGGATGGCAGAAGTTGTT
GCACCCAGCAGCCCATCGTACGACAGCGTAGCGCATTGTCCTCAAAACCG
TAGCCTTTTCGCCCTCTACCCCAAGCCAAGGTGGCCGTCCTCCATCCCGG
GGCCGAGGAATCCACCAAGAAGGATTGCAGCACGAAAAATAACGCAACTT
TCAAAGTCACACGCCACTACTCACGCACACACCACTGCGGCATGGAAAAA
ACGACAGGAGTTGCCTCGCCTGTATCCGCAAGAGTTGTCGTGGTTAACTA
ACGGCGGGACCAGCCGCGAATCATTCAAATCTTGCTTTTAATTTTCGATA
TTTCGGTTCGTGCTTGGTTGTTACGCTCATGCACACATGGCAAATGCATC
CACTCCCAAACCACACCAGGCGGAGGAGGCCGCGAAAAAGGGCCCCGAGT
GCGCCCTGAAGAACCGACTGCTGTTCCACGTGTCGCACAAGCTGCTCGAC
GAGAACAAGCTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6065:3927..4988-

>mRNA_L-elsbetiae_contig6065.14600.1 ID=mRNA_L-elsbetiae_contig6065.14600.1|Name=mRNA_L-elsbetiae_contig6065.14600.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig6065:3927..4988- (Laminarionema elsbetiae ELsaHSoW15)
AGGGATTTCACCGGAGCGGTAACCCTGCTCGAGTTTAACCGTCGATCAGG
AGAGGACGACACTCTCGAGGACACTCTCATGTGGCTGGGATATTGCTCCT
TCCACCTCGGGAACTACCAAAGAGCCATCGACGCATACCAGAGGGATTTC
ACCGGAGCGGTAACCCTGCTCGAGTTTAACCGTCGATCAGGAGAGGACGA
CACTCTCGAGGACACTCTCATGTGGCTGGGATATTGCTCCTTCCACCTCG
GGAACTACCAAAGAGCCATCGACGCATACCAGTCGATCGGCGGTCCGGAC
GAGGTCACTCTGTTCCTGGCGTGCTGCTACTACTACATGCAGATGTTTGA
TAAGTCGATCGGCGGTCCGGACGAGGTCACTCTGTTCCTGGCGTGCTGCT
ACTACTACATGCAGATGTTTGATAAGGCGGAGGAGGCCGCGAAAAAGGGC
CCCGAGTGCGCCCTGAAGAACCGACTGCTGTTCCACGTGTCGCACAAGCT
GCTCGACGAGAACAAGCTCGCGGAGGAGGCCGCGAAAAAGGGCCCCGAGT
GCGCCCTGAAGAACCGACTGCTGTTCCACGTGTCGCACAAGCTGCTCGAC
GAGAACAAGCTC
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