mRNA_L-elsbetiae_contig6064.14599.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6064.14599.1
Unique NamemRNA_L-elsbetiae_contig6064.14599.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6064.14599.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6064contigL-elsbetiae_contig6064:3852..4567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size338
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6064.14599.1prot_L-elsbetiae_contig6064.14599.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6064 3872..4567 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.8750706-UTR-L-elsbetiae_contig6064:3851..38711622816661.8750706-UTR-L-elsbetiae_contig6064:3851..3871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6064 3852..3871 +
1691683721.343957-UTR-L-elsbetiae_contig6064:3851..38711691683721.343957-UTR-L-elsbetiae_contig6064:3851..3871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6064 3852..3871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816661.8850121-CDS-L-elsbetiae_contig6064:3871..39761622816661.8850121-CDS-L-elsbetiae_contig6064:3871..3976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6064 3872..3976 +
1691683721.3543-CDS-L-elsbetiae_contig6064:3871..39761691683721.3543-CDS-L-elsbetiae_contig6064:3871..3976Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6064 3872..3976 +
1622816661.8944051-CDS-L-elsbetiae_contig6064:4354..45671622816661.8944051-CDS-L-elsbetiae_contig6064:4354..4567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6064 4355..4567 +
1691683721.363663-CDS-L-elsbetiae_contig6064:4354..45671691683721.363663-CDS-L-elsbetiae_contig6064:4354..4567Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6064 4355..4567 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6064.14599.1

>prot_L-elsbetiae_contig6064.14599.1 ID=prot_L-elsbetiae_contig6064.14599.1|Name=mRNA_L-elsbetiae_contig6064.14599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=106bp
MRREREEAVTPPSPDSPGPRRRRSVSMTSVSEPAQVLGSAAAAAAAAGAA
AAAMDDAAEVRRLSGSTEGGGSGPLLGGFGHLGGHGLSQSSTSRGDPSLD
CTSTT*
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mRNA from alignment at L-elsbetiae_contig6064:3852..4567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6064.14599.1 ID=mRNA_L-elsbetiae_contig6064.14599.1|Name=mRNA_L-elsbetiae_contig6064.14599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=716bp|location=Sequence derived from alignment at L-elsbetiae_contig6064:3852..4567+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCACCCCCGTCCCCGGCCATGCGGCGTGAGCGAGAAGAGGCGGTCACC
CCCCCGTCTCCGGATTCCCCGGGGCCCCGACGACGTCGGTCTGTCTCCAT
GACCTCCGTGTCGGAACCCGCGCAGGTATCTTGTGATTCCGGTTTGACTC
GAGTTTGCATGTCTGTTTTTTTTTTTTTGTGTCTGAGTTAAATAGTTGTG
TCGCCGTTGCCCCATCTATCGAAAGGGGGGGAGGCGCTGGATATTTGCGG
TAGATTGTGTGTGTGTTTATGTGTGTTTTGTTTGTGCCCCGCGTGCGTGC
GTCGCGCCGATGGACCGATTTTACCTAAATGCATCCATATATTTTACCTA
TGATAGACACACAGACGTTTGACTGATCGACTTGATCGGGGTGGCGTTCT
TGTCACTTCGCGCTCACATTTTTATCAGCTCGACGATCACCCCATCAGCA
CCCCCCCCCCTCTGGCCGTCGACTTGTTCGAACATGGAAATAACTTCGGT
CAGGTGCTGGGCTCGGCGGCAGCAGCGGCGGCGGCGGCGGGGGCGGCGGC
AGCAGCAATGGACGATGCTGCTGAAGTTCGGAGGCTATCTGGCAGCACCG
AGGGTGGTGGCAGCGGGCCACTGCTGGGGGGGTTCGGGCATCTTGGAGGG
CACGGGTTGTCGCAGAGTAGCACCAGCAGAGGTGACCCATCCCTCGATTG
TACTTCTACAACATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6064:3852..4567+

>mRNA_L-elsbetiae_contig6064.14599.1 ID=mRNA_L-elsbetiae_contig6064.14599.1|Name=mRNA_L-elsbetiae_contig6064.14599.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=636bp|location=Sequence derived from alignment at L-elsbetiae_contig6064:3852..4567+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGCGTGAGCGAGAAGAGGCGGTCACCCCCCCGTCTCCGGATTCCCC
GGGGCCCCGACGACGTCGGTCTGTCTCCATGACCTCCGTGTCGGAACCCG
CGCAGATGCGGCGTGAGCGAGAAGAGGCGGTCACCCCCCCGTCTCCGGAT
TCCCCGGGGCCCCGACGACGTCGGTCTGTCTCCATGACCTCCGTGTCGGA
ACCCGCGCAGGTGCTGGGCTCGGCGGCAGCAGCGGCGGCGGCGGCGGGGG
CGGCGGCAGCAGCAATGGACGATGCTGCTGAAGTTCGGAGGCTATCTGGC
AGCACCGAGGGTGGTGGCAGCGGGCCACTGCTGGGGGGGTTCGGGCATCT
TGGAGGGCACGGGTTGTCGCAGAGTAGCACCAGCAGAGGTGACCCATCCC
TCGATTGTACTTCTACAACATAAGTGCTGGGCTCGGCGGCAGCAGCGGCG
GCGGCGGCGGGGGCGGCGGCAGCAGCAATGGACGATGCTGCTGAAGTTCG
GAGGCTATCTGGCAGCACCGAGGGTGGTGGCAGCGGGCCACTGCTGGGGG
GGTTCGGGCATCTTGGAGGGCACGGGTTGTCGCAGAGTAGCACCAGCAGA
GGTGACCCATCCCTCGATTGTACTTCTACAACATAA
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