mRNA_L-elsbetiae_contig6047.14587.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6047.14587.1
Unique NamemRNA_L-elsbetiae_contig6047.14587.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: D7FI14_ECTSI (SF3b1 domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI14_ECTSI)

HSP 1 Score: 437 bits (1124), Expect = 2.920e-144
Identity = 281/351 (80.06%), Postives = 286/351 (81.48%), Query Frame = 2 
Query:  179 MANVDEEIKALQKERESGIVAAADAEGDAEKEEGGDDADGQVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDQKRRWDDG-TPVAARGGXXXXXXXXXETPAAGRAAVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVARRSSRWDQSGG--VTPVAGGVTPGLTPGGVGDTPKAGSKWDDXXXXXXXXXXXXX-PSGRKKSRWDQVSLAFVCP 1219
            MANVDEEIKALQKERESGIVA AD E D           GQVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRAS+NAPRHLLDGGE        + TIAGMRAGGSGMVNTVIAERESAYQAKGRR+QMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKD KRRWDDG TPVA  GG         ETPA G+  VSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPV RRSSRWDQSGG  VTP+AGGVTPG    GVGDTPKAGSKWDD              PSGRKKSRWDQ   A V P
Sbjct:    1 MANVDEEIKALQKERESGIVATADGEDDGGDGXXXXXXXGQVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASVNAPRHLLDGGEEREGGDDDNSTIAGMRAGGSGMVNTVIAERESAYQAKGRRNQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVKRRWDDGGTPVA--GGVADGD----ETPAVGK-IVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGVTPG----GVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTP 340
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A6H5JJ74_9PHAE (TOG domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ74_9PHAE)

HSP 1 Score: 405 bits (1041), Expect = 2.440e-126
Identity = 278/413 (67.31%), Postives = 284/413 (68.77%), Query Frame = 2 
Query:  179 MANVDEEIKALQKERESGIVAAADAEGDAEKEEGGDDADGQVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDQKRR--------------------------------------------------------------WDDG-TPVAARGGXXXXXXXXXETPAAGRAAVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVARRSSRWDQSGG--VTPVAGGVTPGLTPGGVGDTPKAGSKWDDXXXXXXXXXXXXX-PSGRKKSRWDQVSLAFVCP 1219
            MANVDEEIKALQKERESGIVAAAD E D           GQVALTGAGAYDRDIYGGGGDKFAGVSRTVV XXXXXXXXXXXXXXXXXXXXSHPASRAS+NAPRHLLDGGE        + TIAGMRAGGSGMVNTVIAERESAYQAKGRR+QMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKD   R                                                              WDDG TPVA  GG         ETPA G+  VSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPV RRSSRWDQSGG  VTP+AGG+TPG    GVGDTPKAGSKWDD              PSGRKKSRWDQ   A V P
Sbjct:    1 MANVDEEIKALQKERESGIVAAADGEDDGGDXXXXXXXXGQVALTGAGAYDRDIYGGGGDKFAGVSRTVVEXXXXXXXXXXXXXXXXXXXXSHPASRASVNAPRHLLDGGEEREGGDDDNSTIAGMRAGGSGMVNTVIAERESAYQAKGRRNQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDVIMRKAAKQAEEAASLKRSVPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWDDGGTPVA--GGVADGD----ETPAVGK-IVSDWDADVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVTRRSSRWDQSGGGGVTPMAGGITPG----GVGDTPKAGSKWDDETPRAGGGFGAGETPSGRKKSRWDQTPQAGVTP 402
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A835Z3L3_9STRA (Splicing factor 3B subunit 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3L3_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.700e-15
Identity = 59/148 (39.86%), Postives = 83/148 (56.08%), Query Frame = 2 
Query:  299 QVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDQ 742
            +V L   G +D DIYGGG DKFAG S  +V                     SHP++R +I A      GGE        D       +GGSG+VNT I++RE+ Y A+ RR++++SP RG DAF+G+TP RS++DIM  Q L ++K++
Sbjct:   32 KVGLLSVGGFDTDIYGGG-DKFAGFSSAIVDEQEEADGDTEVISHIGAA--SHPSTRMAIPAKALEAAGGEDAS-----DPFAQYRESGGSGLVNTRISDRETDYHAR-RRNRLLSPDRG-DAFSGKTPARSYKDIMINQDLDRQKEE 169
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A7S2D4K5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D4K5_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 2.780e-15
Identity = 70/185 (37.84%), Postives = 90/185 (48.65%), Query Frame = 2 
Query:  188 VDEEIKALQKERESGIVAAADAEGDAEKEEGGDDADGQVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDQ 742
            ++ +I+ LQ+ R +G    A  E D E E G      +V LT  GA+D D+YG   DK                              +HPA+RASINA + LL+ G                    SGMVNT IA+RES YQ KGR+ + ISP RG D F+G TP RS++DIM  Q L KE+ Q
Sbjct:   11 METQIRELQQSRAAG---EAGQEEDNEAEPGE-----RVGLTSKGAFDSDLYGA--DK------------PFHTEIEDIAPDADDEAGNHPATRASINASKGLLEQGTDADTGIDPFAAYKEQ----SGMVNTRIADRESEYQKKGRQGRFISPARG-DVFSGTTPARSYKDIMTAQNLEKEEAQ 168
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A662WMW2_9STRA (SF3b1 domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WMW2_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.040e-14
Identity = 57/145 (39.31%), Postives = 77/145 (53.10%), Query Frame = 2 
Query:  302 VALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEK 736
            VALT AGA+D++IYG GGD+FAG S T+                         ASR++    +    GG+        D       A GSG+VNT I +RE++Y+ K R  +M+SP RG DAF G+TP RS++DIM  Q L  E+
Sbjct:   38 VALTAAGAFDQEIYGAGGDRFAGYSATIADEGDDAEEKEGDETA---------ASRSTTTTNKVATQGGDGLIDDSY-DPFAEAREANGSGLVNTRIVDRENSYR-KRRFDRMLSPERG-DAFGGKTPARSYKDIMQGQQLDMER 170
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A8K1FMX0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FMX0_PYTOL)

HSP 1 Score: 77.4 bits (189), Expect = 1.660e-11
Identity = 53/147 (36.05%), Postives = 74/147 (50.34%), Query Frame = 2 
Query:  299 QVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKD 739
            +V L+  G +D+DIYGGGGDK+AG S  VV                        A++ + N    L+D G         D         GSG+VNT I +RE+ Y+ K R  +M+SP RG D F G+TP RS++D+M  Q L  E++
Sbjct:   10 KVGLSSTGHFDQDIYGGGGDKYAGFSTAVVDEDDDEAAELATLRKGRGF-----AAKGNGNPEDGLIDEGH--------DPFATARAENGSGLVNTRIVDRENDYR-KRRFDRMLSPERG-DTFDGKTPQRSYKDVMQSQRLEAERN 141
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A7S3ZMT2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZMT2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.060e-6
Identity = 61/218 (27.98%), Postives = 91/218 (41.74%), Query Frame = 2 
Query:  179 MANVDEEIKALQKERESGIVAAADAEGDAEKEEGGDDADGQVALTGAGAYDRDIYGGGGDKFAGVSRTVVXXXXXXXXXXXXXXXXXXXXXSHPASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKD---------------QKRRWDDGTPVAARGG 787
            M + ++EI+ALQK R       ++++G A            +    +G +DRD+YGG      G+SR +V                      HP+++  +  P    DG +        +              N  IAERESAYQAKGR ++ +SP R  D FA  TP R FR+ M    + +E+D               +KRR+DD     A+ G
Sbjct:    1 MPSQEDEIRALQKAR-------SESKGTA------------LGAAASGEFDRDLYGGA----KGLSREIVDEPTQDDDGGGGL---------HPSTQRDLRGPADEDDGEDPFKAHRDRN------------PANIPIAERESAYQAKGRATRELSPERQ-DPFADATPARGFREAMGSNVVDRERDDLLKKIAENEDDKGGKKRRFDDAGDKPAKEG 173
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A7S3RUZ3_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RUZ3_EMIHU)

HSP 1 Score: 60.5 bits (145), Expect = 1.610e-6
Identity = 58/178 (32.58%), Postives = 79/178 (44.38%), Query Frame = 2 
Query:  461 ASRASINAPRHLLDGGEXXXXXXXXDGTIAGMRAGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFA---GQTPTRSFRDIMAEQALAKEKDQ------------------KRRWDDGTPVAARGGXXXXXXXXXETPAAGRAAVSDWDADVATPVRSSRGFGGGETPGRTPGG 931
            A R+S  AP+HLL   E        D  ++          +  IA+RE  Y A  RR +++SP R  D FA   G +  RS+RD+MAE  +A++KD+                  +RRWD   P A   G          + AAG+   + WD DVATP      +    TPGR  GG
Sbjct:   55 AKRSSFTAPKHLL---EAVPQQPEDDDPMS--------QRSNRIADREDEYHA--RRQRVLSPSRA-DPFAKGAGGSSERSYRDVMAEADIARQKDEIRRKLAEQSEEGATGVKKRRRWD--APAAGDAGA---------SAAAGKKQATRWD-DVATPAPVGSKWDSTPTPGRDAGG 206
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: A0A2D4C3T6_PYTIN (Splicing factor 3B subunit 1 n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C3T6_PYTIN)

HSP 1 Score: 61.6 bits (148), Expect = 1.950e-6
Identity = 42/95 (44.21%), Postives = 58/95 (61.05%), Query Frame = 2 
Query:  560 AGGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEK-DQKRRWDDGTPVAARGGXXXXXXXXXETPAAGRAA 841
            A GSG+VNT IA+RE+ Y+ K R  +M+SP RG DAFAG+TP RS+++IM +Q L  E+ D  R+      +A   G         + P+AG AA
Sbjct:   67 ANGSGLVNTRIADRENDYR-KRRFDRMLSPERG-DAFAGETPQRSYKEIMQQQRLDSERRDVIRQIQKKQQLADERGDAASADSATDRPSAGSAA 159
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BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Match: UPI000711D3D4 (splicing factor 3b subunit 1 n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711D3D4)

HSP 1 Score: 60.5 bits (145), Expect = 4.160e-6
Identity = 66/177 (37.29%), Postives = 93/177 (52.54%), Query Frame = 2 
Query:  563 GGSGMVNTVIAERESAYQAKGRRSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDQKRRWDDGTPVAARGGXXXXXXXXXETPAAGRAAVSDWDA--DVATPVRSSRGFGGGETPGRTPGGXXXXXXXSRWDQTPSRDAQETPVARRSSRWDQS------GGVTPVAGGVTPG 1069
            GGSG+VNT IA+RES YQ + R  +M+SP R  D +    P R ++++M E+ L +E+ +  +      +  +     X      + A+    VS  D+  D  TP R S     GETP R+    XXXXXX   DQ   +   +TP A+RS RWD++      G  TP +GGVTPG
Sbjct:  101 GGSGLVNTRIADRESDYQRQ-RIKRMLSPERS-DPYKDSEPVRGYKEVMREKLLDEEESRVYK-----QILEKQQEEQXRQSQKRSEASTDKTVSSTDSVWDAPTPTRGSEV---GETPSRSK--WXXXXXXXXXDQG-EKTIGDTPGAKRS-RWDETPVSRAFGTSTPGSGGVTPG 263
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6047.14587.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FI14_ECTSI2.920e-14480.06SF3b1 domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5JJ74_9PHAE2.440e-12667.31TOG domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A835Z3L3_9STRA1.700e-1539.86Splicing factor 3B subunit 1 n=1 Tax=Tribonema min... [more]
A0A7S2D4K5_9STRA2.780e-1537.84Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A662WMW2_9STRA3.040e-1439.31SF3b1 domain-containing protein n=2 Tax=Nothophyto... [more]
A0A8K1FMX0_PYTOL1.660e-1136.05Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3ZMT2_9STRA1.060e-627.98Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S3RUZ3_EMIHU1.610e-632.58Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A2D4C3T6_PYTIN1.950e-644.21Splicing factor 3B subunit 1 n=2 Tax=Pythium insid... [more]
UPI000711D3D44.160e-637.29splicing factor 3b subunit 1 n=1 Tax=Blastocystis ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6047contigL-elsbetiae_contig6047:5927..11080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score439.5
Seed ortholog evalue1.5e-120
Seed eggNOG ortholog2880.D7FI14
Preferred nameSF3B1
KEGG koko:K12828
KEGG Pathwayko03040,map03040
KEGG ModuleM00352
Hectar predicted targeting categoryother localisation
GOsGO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000785,GO:0001701,GO:0001824,GO:0001825,GO:0003002,GO:0003674,GO:0003676,GO:0003682,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005686,GO:0005689,GO:0005694,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0007389,GO:0008150,GO:0008152,GO:0008380,GO:0009653,GO:0009790,GO:0009792,GO:0009892,GO:0009893,GO:0009952,GO:0009987,GO:0010467,GO:0010468,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016363,GO:0016604,GO:0016607,GO:0019222,GO:0022607,GO:0022613,GO:0022618,GO:0030532,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034399,GO:0034622,GO:0034641,GO:0034693,GO:0040029,GO:0043009,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045815,GO:0046483,GO:0048518,GO:0048519,GO:0048646,GO:0048856,GO:0050789,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071004,GO:0071005,GO:0071010,GO:0071011,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0090304,GO:0097159,GO:0097525,GO:0120114,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.spliceosomal complex assembly
EggNOG OGsCOG5181@1,KOG0213@2759
Ec32 orthologEc-12_006680.2
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko03041
Ec32 ortholog descriptionSplicing factor 3B subunit 1
Ec32 orthologEc-12_006680.1
Exons4
Model size1219
Cds size1041
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6047.14587.1prot_L-elsbetiae_contig6047.14587.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6047 6105..11080 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.450317-UTR-L-elsbetiae_contig6047:5926..61041622816660.450317-UTR-L-elsbetiae_contig6047:5926..6104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6047 5927..6104 +
1691683720.2699106-UTR-L-elsbetiae_contig6047:5926..61041691683720.2699106-UTR-L-elsbetiae_contig6047:5926..6104Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6047 5927..6104 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816660.4652689-CDS-L-elsbetiae_contig6047:6104..62951622816660.4652689-CDS-L-elsbetiae_contig6047:6104..6295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 6105..6295 +
1691683720.2818596-CDS-L-elsbetiae_contig6047:6104..62951691683720.2818596-CDS-L-elsbetiae_contig6047:6104..6295Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 6105..6295 +
1622816660.4799767-CDS-L-elsbetiae_contig6047:8163..84341622816660.4799767-CDS-L-elsbetiae_contig6047:8163..8434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 8164..8434 +
1691683720.2901986-CDS-L-elsbetiae_contig6047:8163..84341691683720.2901986-CDS-L-elsbetiae_contig6047:8163..8434Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 8164..8434 +
1622816660.490368-CDS-L-elsbetiae_contig6047:9641..97431622816660.490368-CDS-L-elsbetiae_contig6047:9641..9743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 9642..9743 +
1691683720.2986917-CDS-L-elsbetiae_contig6047:9641..97431691683720.2986917-CDS-L-elsbetiae_contig6047:9641..9743Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 9642..9743 +
1622816660.502311-CDS-L-elsbetiae_contig6047:10603..110801622816660.502311-CDS-L-elsbetiae_contig6047:10603..11080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 10604..11080 +
1691683720.3121607-CDS-L-elsbetiae_contig6047:10603..110801691683720.3121607-CDS-L-elsbetiae_contig6047:10603..11080Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6047 10604..11080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6047.14587.1

>prot_L-elsbetiae_contig6047.14587.1 ID=prot_L-elsbetiae_contig6047.14587.1|Name=mRNA_L-elsbetiae_contig6047.14587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=347bp
MANVDEEIKALQKERESGIVAAADAEGDAEKEEGGDDADGQVALTGAGAY
DRDIYGGGGDKFAGVSRTVVEEEEPEEDEDEVVTHRGGGGASHPASRASI
NAPRHLLDGGEEREGGGDDDGTIAGMRAGGSGMVNTVIAERESAYQAKGR
RSQMISPIRGGDAFAGQTPTRSFRDIMAEQALAKEKDQKRRWDDGTPVAA
RGGGGGGDGDGDETPAAGRAAVSDWDADVATPVRSSRGFGGGETPGRTPG
GGGETPGRSRWDQTPSRDAQETPVARRSSRWDQSGGVTPVAGGVTPGLTP
GGVGDTPKAGSKWDDETPRAGGFGAGETPSGRKKSRWDQVSLAFVCP
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mRNA from alignment at L-elsbetiae_contig6047:5927..11080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6047.14587.1 ID=mRNA_L-elsbetiae_contig6047.14587.1|Name=mRNA_L-elsbetiae_contig6047.14587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5154bp|location=Sequence derived from alignment at L-elsbetiae_contig6047:5927..11080+ (Laminarionema elsbetiae ELsaHSoW15)
CGAGCACGAGGGAGGGATCAGCTGACGGAGCACGTAAACAACTGGAAAAG
TGCCGGTGTAACATCTTCCCAATCGAAGAGCCGGCCTGAAGCCTCCCTCG
AACGAAAAGGGAATTGGTTGGTAGTTTTGCACCCCGTTTTTGCTGCGTTC
GAGAGAGGGGGCACAGCAGGCAGCCATCATGGCGAACGTGGACGAGGAGA
TAAAGGCGCTCCAGAAGGAGAGGGAGAGTGGCATCGTTGCAGCAGCGGAC
GCCGAGGGAGACGCCGAGAAAGAGGAGGGGGGGGATGACGCGGACGGCCA
GGTGGCGCTCACAGGAGCGGGAGCCTACGACAGAGATATCTACGGCGGCG
GTGGGGACAAGTTTGCCGGGTATGTATCTGGTATCAAGCGAGAGAGCCGA
CGGCCGGGTTTTGGGGTGTTCGCGCACGTGCTGTTGGTTGCGGGGCGCGC
GTACAGCGTGGCGATCGTCGAGAAGGCTGAGCCATGAGCACGAGAAAGAT
CCACGCAGCGCTGCTCGTACTTGTCGTAAATCTGCAGCAGCAGCTGCTGT
TGTCCTCTCCTCTCCCCTGTCTGATTTTTCTCCCGCTCTAGTCTACACAT
AGTTTCACGAGTACCTGAAGGGGTGCACGTGCGCCTCGTGTACAGCGGCG
GTGTACTTTACCGGGGCACTCACAGTTTATTGGCGTATAGGATCGTTTGT
GATCGAATGTTTTCCCCACCAATCCACCTCGATGATGTTCCCTCTGGGCG
GGATCGAGACAGAGCGGCTCTGCCTGCTCCAGGGGCGAGCGGTTTATGAC
GCTGCCGCGATGCCGACGGCCGCCGCCACAGCAGGCGTGCGTGCGCCTGC
AATCCTGTGTCTTGTTGCATGGCAGACAAGACCAGGCCTGGTGGCGATTT
TGCCGTGTCATGCTTGTCAGTTCGTGGCACACTCTATTGTTTTCAATGAA
GACCTGCCCAAAGTTGCGAAAAATTGCACTCACGGGCCCCCTTCCGGCCG
GACCCCGGCTTTACCAGGCACCCCTCAGGTGCAAACGGTATCCGCGGTAC
ACGATCGTTCGCGTGGGTCGTAATTTCCCGAGACACCAGCTAGGAACGGG
CGGTGTGTGAAAGGGCTAGATAACAAGGAAAAAGAGATACATGAGACTAC
TCCCGGTGCTCGACGCGCCACGTACCCCCCTCCGACCCAACACGGGGTGA
CCTGGTCACCTGGTTACCAGGAGAGTGCAGGGCAGGACGACCCCCGCCCC
TATTTCCCAGGGTTTTCAGGCCTTGTCGAAGTTTGCTTTCATATACAGGA
ATTAGTATGGTCATACTCTTGTTAAGACCCCCCTGGTAGCTGGTATCATG
GGGGGGTGGTAGGCAGCGTATGACCATGCTAAATCCTGTATATTAATAAC
ATATATTAATAACATATGGTTTGCATACCACCCTAAATCCGATACAAACC
CGCCCCCCTTTCCCCCCCTCCTTCCCCTCCGAGTTTGGGCTAATTAAAGT
TTTGGGGGGGTGCATCCAGCCCTGCAATCCTGGTGACCCCTTGCCCCAAC
GATAAATGAATCATCACCGCCGTCCACAGCGTGCCCAGCCGATCACGCGC
TGCTCCGACACCGAGAAGGAGGGGAGAACAGTTGCCGTATGATAAATATC
TCGAAATACAACTATACCTCCAAATACACCCCCCGACCTCTTCTCCCCCA
AGCAAAGACTCCCCCTCCTCCCTCACCCGGTGCACAACTTATGACCGTGC
CCCTCTCGCACTGCACACACAAACCTTACACAACACACTATTAATGTGTA
CCAAGACTAGCTGGACCGAATGAATACCGTACCATTGTAGCCAGGGGCGG
CGGTTAAGGGGCGGGTGTACGTTACAACATTGACACTGTCCAAGTTTTGG
GCAAAAGGTACTACAAAACAGCAGCCGTGTCGCTTTGTGACAAAAATAGT
ACATATGTACTTCACAAGTCAGGTGGTCCATACCTCCTTGCCTCGCCTCT
CCCCAACAATCCACAGCCTCCATGGCTCACGTGCACCCATCGACGTCGAC
CAACCCACCCGCCACCACCACCACCACCACCACCACCACGCCCCACCATT
CCATTCCGCGCTGACAAATAACAAAACAACAACAACAACAACAACAACAA
CAACAACAACAGCAGCAACAACAACAGCAGCAGCAGCATTATTAACACGA
AACGACTACGACACACCCAATAAAAAACGCCGCGCAGGGTTTCCCGGACG
GTCGTGGAGGAGGAAGAGCCGGAGGAGGACGAGGACGAGGTCGTCACGCA
CCGCGGCGGCGGGGGGGCTTCGCACCCCGCCTCCCGCGCGAGCATCAACG
CCCCCCGGCACCTCCTAGATGGCGGCGAGGAGAGAGAGGGCGGGGGAGAC
GACGACGGAACCATCGCAGGCATGCGGGCCGGGGGGTCGGGGATGGTGAA
CACGGTCATCGCGGAGCGCGAGTCGGCGTACCAGGCGAAGGGCCGCCGGA
GTCAGATGGTGCGCTGGTGGTGGTGGTGGTGGTGATGTTATTTTATTTGT
TTGTTACTTTGCGGGAGGTGCAGAGCGAGGATGGTGCCATCCATGCCTTG
CAGTAGAAAACTTGCCCTTGGTCTCTTTGTGTGCGTTTTCCGCCTCATGG
AGTGTTTGTTGTGTTTGTGTGTGTTGTTTCCCAATGGAAACCCCTACCTG
CCCGTAGAAACGAGAGGGGGGGGGGGGGGGGGCAGGGGAGGGCCCCATGT
TGTCTCCGGTCTCCTGGGGGAGTGGGGGGGATCATTCTTCTCATCCTTTC
CTCGTCTTGTTTTTGTTGTGTTTGTGTGGTTTTTTTGTGTTTTCTTTGGT
TTTTCGCTCAGTCGACCCCCCTCCAGCCAGGACGAAGGGGGGGGGGGGGG
GGGGGGGGCAGCGAAGGTGCCCTGTCTGTCTCGCTTCTACTTGAGAATTG
GTGCGAATCATTCTACTCATCCTTTCGTCGTCTTCCGAGTGGTGTTTTTT
CATTAATAATAGTTTTTCTCGTCGTGAGCACCTACAGTACATATAAACAC
ATGAGCGATCTACGTACCATACGTACGTACTTCCGACCCTGTGAGGAATA
AAAGCCGTTTCCGGGCTGGCTCTTACGTGTTGTAGACGCACTCACCCTGC
ATACCTCGCCGCCCCAGACCTTCTCCTTGGTCGTCTTTCAAGACCCTCTT
CTTGGTCGTCTTTCAAGAGAGCGATGCTATTTTTTAATGCCGTGTCGCAT
CGTACGTATCGTATCGTATCTTATCGTACCGTGTCCTGTCCTATCCTGTC
CTGTTTTGTCTTATCCTATCCTGTCCTGTCCTGTCCTATCCTGTCCTATC
CTATCCTATCCTATCCTATCCTATACTGTCCTATACTGTCCTGTCCTATC
CTATCCTATACTGTCCTATACTGTCCTATCCTATCCTATCCTATCCTGTC
CTGTCCGTCCTATCCTGTCCTATCCTGTCTCGCTTCATTTCTGCCTTTTC
GTGCTCGGCCGGTGGCACACCCGTCGTACCGCGGCCGTGCGACCTTTCCC
TCACCAACACTCCTTTCCCCTGCCGAGCTCTTTCTCGCACCCACCCATCC
GCCCGCCCGCCCGCCCGCCCGCCCGCACGTCGCCCCCATCGTCCCCGCCG
TCCCCGTCACCCCCACCTCCCCCCCTCCCCCACCCTCCCCTCCTCGCTCC
CCATGGCGCAACTAGATATCCCCCATCCGAGGCGGGGATGCGTTCGCCGG
CCAGACGCCCACCCGGAGCTTCAGGGACATCATGGCGGAGCAGGCGTTGG
CTAAGGAGAAGGATCAGGTCGAGTTTTGTGTGGAGCGCTCTCGCTTTTTG
TTGCACTTTTTCTCCTGTGTGTGTGTGTGTGTGTGTGTTGTTGTTTCTTC
ACGTTAGCTCGTATAATCGAGATTGCTAATTCCAAAAATCTAGCAACTCA
CGGCCCGTGGTCACAGAAGTGCTAGAGCCATCAGAAGATCCGAAAAAAGG
GTGTGGGTGTGTGTGTGTGTGTGTCGGTTCGGTCTTCTGTTTTCCGTTTT
CCTTTTGGGCTTGGGTTTTGGTCTCGAACTTTGCTGCTACCTACCACCTA
CTAGCTGTCAGCGATGCGATCCGACGGTTCTTGACCAAACAAAAGGCTTT
GGATATTGTCTTATTCCGTGTATTGATGGTGGGTTCCTGAGGTAAATAGT
TTGTTGACCGGATGGATCGATGGATGGGTGTCTTGTGGTTGTGTGGAGGG
GACACCGCTGCGATCGCGAAAAGATAACGAGGCGTTTTGTCAAAAGGTCG
ATCCTTCGTGCATACATACCTCAGCTTCTCGGTCAGGCACCGCTGCTGTC
AGAGTCGCCGCCGCTTCCGGCACCGGAGGTGTTTGTCTTGCTTGCCGTGC
CGCCGCCGCCGCGCTCACGAACGCCTTCCTTCCTCACAACCACACCACAC
CACCGCCCACCGCGACCCATGCACAGATCCTGCGGAAGGCGGCCAAGCAA
GCCGAGGAGCAGGCGAGCCTCAAGCGCTCGGTACCATCCTCCGGCGGCGC
CGCCGGCGCCGCGGGAGTGTACGGCCCCGGCGCGGGCGCGGCCGCCTCCG
CGGCAGCGGCGGCGGCGGCGGCGGCCTCTGCGTCGACCACGCCTCGCGTC
GGCGGCGGTGCCGGCTCGGTCCGCAAGAAGCGCCGCTGGGATGACGGGAC
TCCCGTGGCGGCGAGGGGCGGCGGCGGCGGCGGCGACGGGGACGGGGACG
AGACGCCGGCGGCCGGCAGGGCCGCCGTGTCGGACTGGGACGCCGACGTG
GCGACGCCGGTGCGCAGCAGCCGCGGCTTCGGCGGCGGCGAAACCCCGGG
CAGGACGCCCGGGGGCGGCGGCGAGACCCCCGGGCGGAGCCGGTGGGACC
AGACCCCGAGCCGAGACGCCCAGGAGACCCCCGTGGCCCGGCGGTCGAGC
AGGTGGGATCAGAGCGGGGGCGTGACGCCGGTGGCGGGGGGGGTCACTCC
CGGCCTGACTCCCGGCGGCGTCGGCGACACCCCCAAGGCCGGCTCGAAGT
GGGACGACGAGACCCCGAGAGCGGGGGGGTTCGGGGCCGGAGAGACCCCG
TCGGGGCGCAAGAAGTCTCGGTGGGACCAGGTGAGTCTTGCTTTTGTGTG
TCCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6047:5927..11080+

>mRNA_L-elsbetiae_contig6047.14587.1 ID=mRNA_L-elsbetiae_contig6047.14587.1|Name=mRNA_L-elsbetiae_contig6047.14587.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2082bp|location=Sequence derived from alignment at L-elsbetiae_contig6047:5927..11080+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACGTGGACGAGGAGATAAAGGCGCTCCAGAAGGAGAGGGAGAG
TGGCATCGTTGCAGCAGCGGACGCCGAGGGAGACGCCGAGAAAGAGGAGG
GGGGGGATGACGCGGACGGCCAGGTGGCGCTCACAGGAGCGGGAGCCTAC
GACAGAGATATCTACGGCGGCGGTGGGGACAAGTTTGCCGGATGGCGAAC
GTGGACGAGGAGATAAAGGCGCTCCAGAAGGAGAGGGAGAGTGGCATCGT
TGCAGCAGCGGACGCCGAGGGAGACGCCGAGAAAGAGGAGGGGGGGGATG
ACGCGGACGGCCAGGTGGCGCTCACAGGAGCGGGAGCCTACGACAGAGAT
ATCTACGGCGGCGGTGGGGACAAGTTTGCCGGGGTTTCCCGGACGGTCGT
GGAGGAGGAAGAGCCGGAGGAGGACGAGGACGAGGTCGTCACGCACCGCG
GCGGCGGGGGGGCTTCGCACCCCGCCTCCCGCGCGAGCATCAACGCCCCC
CGGCACCTCCTAGATGGCGGCGAGGAGAGAGAGGGCGGGGGAGACGACGA
CGGAACCATCGCAGGCATGCGGGCCGGGGGGTCGGGGATGGTGAACACGG
TCATCGCGGAGCGCGAGTCGGCGTACCAGGCGAAGGGCCGCCGGAGTCAG
ATGGGTTTCCCGGACGGTCGTGGAGGAGGAAGAGCCGGAGGAGGACGAGG
ACGAGGTCGTCACGCACCGCGGCGGCGGGGGGGCTTCGCACCCCGCCTCC
CGCGCGAGCATCAACGCCCCCCGGCACCTCCTAGATGGCGGCGAGGAGAG
AGAGGGCGGGGGAGACGACGACGGAACCATCGCAGGCATGCGGGCCGGGG
GGTCGGGGATGGTGAACACGGTCATCGCGGAGCGCGAGTCGGCGTACCAG
GCGAAGGGCCGCCGGAGTCAGATGATATCCCCCATCCGAGGCGGGGATGC
GTTCGCCGGCCAGACGCCCACCCGGAGCTTCAGGGACATCATGGCGGAGC
AGGCGTTGGCTAAGGAGAAGGATCAGATATCCCCCATCCGAGGCGGGGAT
GCGTTCGCCGGCCAGACGCCCACCCGGAGCTTCAGGGACATCATGGCGGA
GCAGGCGTTGGCTAAGGAGAAGGATCAGAAGCGCCGCTGGGATGACGGGA
CTCCCGTGGCGGCGAGGGGCGGCGGCGGCGGCGGCGACGGGGACGGGGAC
GAGACGCCGGCGGCCGGCAGGGCCGCCGTGTCGGACTGGGACGCCGACGT
GGCGACGCCGGTGCGCAGCAGCCGCGGCTTCGGCGGCGGCGAAACCCCGG
GCAGGACGCCCGGGGGCGGCGGCGAGACCCCCGGGCGGAGCCGGTGGGAC
CAGACCCCGAGCCGAGACGCCCAGGAGACCCCCGTGGCCCGGCGGTCGAG
CAGGTGGGATCAGAGCGGGGGCGTGACGCCGGTGGCGGGGGGGGTCACTC
CCGGCCTGACTCCCGGCGGCGTCGGCGACACCCCCAAGGCCGGCTCGAAG
TGGGACGACGAGACCCCGAGAGCGGGGGGGTTCGGGGCCGGAGAGACCCC
GTCGGGGCGCAAGAAGTCTCGGTGGGACCAGGTGAGTCTTGCTTTTGTGT
GTCCCAAGCGCCGCTGGGATGACGGGACTCCCGTGGCGGCGAGGGGCGGC
GGCGGCGGCGGCGACGGGGACGGGGACGAGACGCCGGCGGCCGGCAGGGC
CGCCGTGTCGGACTGGGACGCCGACGTGGCGACGCCGGTGCGCAGCAGCC
GCGGCTTCGGCGGCGGCGAAACCCCGGGCAGGACGCCCGGGGGCGGCGGC
GAGACCCCCGGGCGGAGCCGGTGGGACCAGACCCCGAGCCGAGACGCCCA
GGAGACCCCCGTGGCCCGGCGGTCGAGCAGGTGGGATCAGAGCGGGGGCG
TGACGCCGGTGGCGGGGGGGGTCACTCCCGGCCTGACTCCCGGCGGCGTC
GGCGACACCCCCAAGGCCGGCTCGAAGTGGGACGACGAGACCCCGAGAGC
GGGGGGGTTCGGGGCCGGAGAGACCCCGTCGGGGCGCAAGAAGTCTCGGT
GGGACCAGGTGAGTCTTGCTTTTGTGTGTCCC
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