mRNA_L-elsbetiae_contig6040.14581.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6040.14581.1
Unique NamemRNA_L-elsbetiae_contig6040.14581.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 212 bits (539), Expect = 1.800e-63
Identity = 100/160 (62.50%), Postives = 126/160 (78.75%), Query Frame = 2 
Query:  209 QEGDDSG--YAEAGDKTTVTAIATAYDDRPGEESDMNGCGQDGCMPALAHDGI-REDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEVRFNVE 679
            +E DD+   + EAG KTTV   ATAYDDRPGE +   GCG+ GC+P LAHDG+  ED ESRWSC EEIVP+GGQCEI F FDSPQD+ D+ V FWKG+ER+R+LKV ING+K+G +ES PGS   S GI+ +GV TVT+ES+G+D+D+W+SL+EVRF V+
Sbjct:  242 EEEDDNNAEFVEAGSKTTVGVTATAYDDRPGESAGDVGCGEMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFMVD 401
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: A0A6H5JFX1_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JFX1_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 2.460e-55
Identity = 89/143 (62.24%), Postives = 110/143 (76.92%), Query Frame = 2 
Query:  251 TTVTAIATAYDDRPGEESDMNGCGQDGCMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEVRFNVE 679
            T + A AT +D+RPG+ S  +GCG+ GC+P LA DGI +DVESRWSC E+IVP+GGQCEIEF F  PQ++  + VDFWKGEER+R+LKV INGEK G F+S PGSVT+   +    V TVTLES+GLD DEW+SL+EV F VE
Sbjct:  198 TAIAASATGFDERPGQASGDHGCGKYGCLPVLATDGITDDVESRWSCAEDIVPDGGQCEIEFTFSHPQNLKQLQVDFWKGEERTRTLKVKINGEKFGEFDSHPGSVTSYFDVIAYDVHTVTLESLGLDTDEWISLLEVIFMVE 340
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 170 bits (430), Expect = 1.160e-50
Identity = 76/118 (64.41%), Postives = 96/118 (81.36%), Query Frame = 2 
Query:  329 GCMPALAHDGI-REDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEVRFNVE 679
            GC+P LAHDG+  ED ESRWSC EEIVP+GGQCEI F FDSPQD+ D+ V FWKG+ER+R+LKV ING+K+G +ES PGS   S GI+ +GV TV +ES+G+D D+W+SL+EVRF V+
Sbjct:    2 GCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGSTFNSFGIQENGVHTVAMESVGIDADDWISLLEVRFMVD 119
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D7G3F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F6_ECTSI)

HSP 1 Score: 146 bits (368), Expect = 6.230e-40
Identity = 73/146 (50.00%), Postives = 94/146 (64.38%), Query Frame = 2 
Query:  236 EAGDKTTVTAIATAYDDRPGEESDMNGCGQ---DGCMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            E G KT V+  ATA+D RPG  S   GCG+   +GC PA   DGI  + ESRWSC  +IVP GG C+IE++F  PQD+ DI V FWKG+ER R+L+V  +G      ES  GS    LG+   G+ +V LES+ L ++EW+SLIEV
Sbjct:   74 EVGTKTDVSVSATAHDTRPGSSSGDVGCGEAGGNGCTPANTRDGISNEAESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIQVAFWKGDERVRTLEVYFDGTLYRTHESYAGSTFNPLGVSATGISSVMLESVDLLENEWISLIEV 219
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: A0A6H5JTT4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT4_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 2.060e-37
Identity = 75/146 (51.37%), Postives = 94/146 (64.38%), Query Frame = 2 
Query:  236 EAGDKTTVTAIATAYDDRPGEESDMNGCGQ---DGCMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            E G KT V+  ATAYD RPG  S   GCG+   +GC PA   DGI  + ESRWSC  +IVP GG C+IE++F  PQD+ DI V FW G+ER R+L+V  +G      ES  GS   SLG+   G+ TV LES+ L ++EW+SLIEV
Sbjct:  480 EVGTKTDVSVSATAYDTRPGSSSGDVGCGEAGGNGCSPANTRDGISNETESRWSCASKIVPGGGPCQIEYVFGEPQDIEDIKVAFWMGDERVRTLEVYFDGTLHRTHESYAGSTFNSLGVSATGIGTVMLESVDLLENEWISLIEV 625
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D7FI81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI81_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.770e-35
Identity = 70/146 (47.95%), Postives = 89/146 (60.96%), Query Frame = 2 
Query:  236 EAGDKTTVTAIATAYDDRPGEESDMNGCGQ---DGCMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            E G  T V   ATA+D RPG  S   GCG+   DGC    AHDGI  ++ESRWSC   +VP+ G C+IEF F  PQD+ DI V FW+G ER+R++ + I+GE     ES   S   +LG+      TV LES+ L  DEW+SL+EV
Sbjct:  158 EVGTMTEVNVSATAHDTRPGSSSGDVGCGETGGDGCAAIKAHDGIISEIESRWSCATMLVPDEGPCQIEFSFADPQDIVDIQVAFWEGNERTRTVDIFIDGELTHTHESYADSTFNTLGVTATEASTVMLESVDLLSDEWISLLEV 303
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D7FI77_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI77_ECTSI)

HSP 1 Score: 131 bits (329), Expect = 9.940e-35
Identity = 70/149 (46.98%), Postives = 87/149 (58.39%), Query Frame = 2 
Query:  227 GYAEAGDKTTVTAIATAYDDRPGEESDMNGCGQDG---CMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            G  E G K  V   ATA+D RPG  S   GCG+ G   C      DGI  ++ESRWSC  ++VP+ G C+IEF F  PQ + DI V FWKG +R+R+L V +NGE     ES   S   +LG+  +   TV LES  L  DEW+SLIEV
Sbjct:   19 GAVEVGTKIEVGVSATAHDTRPGNSSGDVGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVPDEGPCQIEFTFAEPQHIVDIQVAFWKGNDRTRTLGVHVNGELTHTHESYTDSTFNTLGVTANEASTVMLESTALLSDEWISLIEV 167
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D7G5F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5F4_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 4.090e-34
Identity = 71/149 (47.65%), Postives = 91/149 (61.07%), Query Frame = 2 
Query:  227 GYAEAGDKTTVTAIATAYDDRPGEESDMNGCGQDG---CMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            G  E G KT V   +TA+D RPG++    GCG+ G   C  A   DGI  ++ESRWSC  ++V + G C+IEF F  PQ + DI V FWKG ER+R+L+V INGE     ES   +   +LG+    V TV LES+ L  DEW+SLIEV
Sbjct:   87 GAVEVGTKTEVGVSSTAHDVRPGDD----GCGEVGGLGCTAANTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIVDIQVAFWKGNERTRTLEVYINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 231
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D7G0S3_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0S3_ECTSI)

HSP 1 Score: 129 bits (324), Expect = 1.640e-32
Identity = 68/146 (46.58%), Postives = 90/146 (61.64%), Query Frame = 2 
Query:  236 EAGDKTTVTAIATAYDDRPGEESDMNGCGQ---DGCMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            E G KT V+  ATA+D R G  S   GCG+   +GC    A DGI  ++ESRWSC  +++ + G C+IEF F  PQ++ DI V FWKG ER R+L+V +NGE     ES   S   +LG+  +   TV LES+ L  +EW+SLIEV
Sbjct:  155 EVGTKTEVSVSATAHDVRAGRSSGEVGCGEAGGNGCAANNARDGISTEIESRWSCAAKLLDDEGPCQIEFSFAEPQNIVDIQVAFWKGNERVRTLEVYVNGELTHTHESYADSTFNTLGVTANEANTVMLESVSLLSNEWISLIEV 300
[Close]
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Match: D7G3F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3F4_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 3.150e-32
Identity = 71/149 (47.65%), Postives = 89/149 (59.73%), Query Frame = 2 
Query:  227 GYAEAGDKTTVTAIATAYDDRPGEESDMNGCGQDG---CMPALAHDGIREDVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKVLINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEV 664
            G  E G KT V   +TA+D RPG  S   GCG+ G   C      DGI  ++ESRWSC  ++V + G C+IEF F  PQ + DI V FWKG ER+R+L+V INGE     ES   +   +LG+    V TV LES+ L  DEW+SLIEV
Sbjct:  361 GAVEVGTKTEVGVSSTAHDVRPGMSSGDAGCGEVGGLGCTATNTRDGIFSEIESRWSCATKLVDDEGPCQIEFTFAEPQTIMDIQVAFWKGNERTRTLEVHINGEMTHTHESYADATFNTLGVTATDVSTVMLESVALLSDEWISLIEV 509
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6040.14581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5J8U9_9PHAE1.800e-6362.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JFX1_9PHAE2.460e-5562.24Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D8LCQ5_ECTSI1.160e-5064.41Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3F6_ECTSI6.230e-4050.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JTT4_9PHAE2.060e-3751.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI81_ECTSI2.770e-3547.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FI77_ECTSI9.940e-3546.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5F4_ECTSI4.090e-3447.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0S3_ECTSI1.640e-3246.58LNR domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G3F4_ECTSI3.150e-3247.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6040contigL-elsbetiae_contig6040:4855..8959 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue3.2e-14
Seed eggNOG ortholog2880.D7FL48
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size712
Cds size618
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.67544-UTR-L-elsbetiae_contig6040:4854..48811622816659.67544-UTR-L-elsbetiae_contig6040:4854..4881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6040 4855..4881 -
1691683719.711777-UTR-L-elsbetiae_contig6040:4854..48811691683719.711777-UTR-L-elsbetiae_contig6040:4854..4881Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6040 4855..4881 -
1622816659.7397294-UTR-L-elsbetiae_contig6040:8892..89591622816659.7397294-UTR-L-elsbetiae_contig6040:8892..8959Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6040 8893..8959 -
1691683719.7778866-UTR-L-elsbetiae_contig6040:8892..89591691683719.7778866-UTR-L-elsbetiae_contig6040:8892..8959Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6040 8893..8959 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816659.6885145-CDS-L-elsbetiae_contig6040:4881..49051622816659.6885145-CDS-L-elsbetiae_contig6040:4881..4905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 4882..4905 -
1691683719.7261732-CDS-L-elsbetiae_contig6040:4881..49051691683719.7261732-CDS-L-elsbetiae_contig6040:4881..4905Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 4882..4905 -
1622816659.6981332-CDS-L-elsbetiae_contig6040:5212..53591622816659.6981332-CDS-L-elsbetiae_contig6040:5212..5359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 5213..5359 -
1691683719.7356684-CDS-L-elsbetiae_contig6040:5212..53591691683719.7356684-CDS-L-elsbetiae_contig6040:5212..5359Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 5213..5359 -
1622816659.7096825-CDS-L-elsbetiae_contig6040:5794..60931622816659.7096825-CDS-L-elsbetiae_contig6040:5794..6093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 5795..6093 -
1691683719.747902-CDS-L-elsbetiae_contig6040:5794..60931691683719.747902-CDS-L-elsbetiae_contig6040:5794..6093Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 5795..6093 -
1622816659.719529-CDS-L-elsbetiae_contig6040:8013..80641622816659.719529-CDS-L-elsbetiae_contig6040:8013..8064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 8014..8064 -
1691683719.7587264-CDS-L-elsbetiae_contig6040:8013..80641691683719.7587264-CDS-L-elsbetiae_contig6040:8013..8064Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 8014..8064 -
1622816659.7295303-CDS-L-elsbetiae_contig6040:8795..88921622816659.7295303-CDS-L-elsbetiae_contig6040:8795..8892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 8796..8892 -
1691683719.7683074-CDS-L-elsbetiae_contig6040:8795..88921691683719.7683074-CDS-L-elsbetiae_contig6040:8795..8892Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6040 8796..8892 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6040.14581.1prot_L-elsbetiae_contig6040.14581.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6040 4882..8892 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6040.14581.1

>prot_L-elsbetiae_contig6040.14581.1 ID=prot_L-elsbetiae_contig6040.14581.1|Name=mRNA_L-elsbetiae_contig6040.14581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=206bp
MTKQWLMTVALSILFATTAAVSNESAAGAAAVENTARSPTFRGSRNLQEG
DDSGYAEAGDKTTVTAIATAYDDRPGEESDMNGCGQDGCMPALAHDGIRE
DVESRWSCCEEIVPEGGQCEIEFIFDSPQDVNDILVDFWKGEERSRSLKV
LINGEKVGMFESQPGSVTTSLGIEWDGVETVTLESMGLDKDEWLSLIEVR
FNVEA*
back to top

mRNA from alignment at L-elsbetiae_contig6040:4855..8959-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6040.14581.1 ID=mRNA_L-elsbetiae_contig6040.14581.1|Name=mRNA_L-elsbetiae_contig6040.14581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4105bp|location=Sequence derived from alignment at L-elsbetiae_contig6040:4855..8959- (Laminarionema elsbetiae ELsaHSoW15)
GTTCCCCGTTCCCTCCAATCCCCGCGTACGCCGCGCGATCCACAGGTCTA
CGTTATCAAATAGAATTATGACGAAGCAATGGCTGATGACCGTCGCCTTG
TCGATCCTCTTCGCCACCACAGCGGCTGTGTCGAACGAGAGCGCTGCTGG
TGCTGCTGCTGTTGGTAAGCTTTTCCGTAGCCGTTTTCACAACAGTATTG
TGGGACGGGGACTGTAAGAGCCGCCACCTTATGCGCGCGGAGACGATAAC
TTGAGGTCTGGGCTCGCCATCGTCAGCGCACGTATGCATACACTCTGACA
GGCTAGATACATAGATACTCACGAACCCACCTTACTCACGAACCCACCTT
ACTTGTTCGGGTTGACCTCGTTTCCCGGCACGAAAAGAAGAAATGTCCAA
ATGATCCCCCGTGTCCAGCAAGTCATCTGGGGCCTAGCTTCCCGAGGAGC
TCGAGCATCATCGGCTTCTTAACTGCTGCTAGCCATCTGCATTCATTCAC
CAAAGCTGTTTGCGCGCGGGTGACTTGCAGCGGCGGCACAAGCCGTCTCA
TCTTCGTGAAGGGGTCGCCCGGCAACGGCTTACCTCTTCCCTGGCGGCGC
GCGCACAACATTCATGTTATCTTAGAAAACAAGCCAGGAAATAAATCACA
AGATGGGATAGTCTAGTCATACATATGTAGGATATTTATCTATCTACTGT
ATGTAATAGTCGAGACTAGGTACCAGCCGTTGATATTTGTTAGCTCAAAG
CATGTCGCGCCGCGAATAGACCTTGGGTGCCTTACGGCTTAAAAATGTCT
CGCTCGTCCGGTTGCCCCCCTATTGTGTATGTATGTCTTCTATGTACATA
CGTGCTTACTCTCCATGCGTCAACACTTTCCGTGTTTTTTCACAGAAAAT
ACCGCCCGATCGCCGACCTTCAGAGGAAGCCGAAATTTGCAGGAAGGTGA
GCAGAATAGCCGGAACCACCCACTTACACAACGCGTCACGACGATGTCAC
CAGACAGAACAACACCGATGTGGACTCGATACAGCGTCCAGTTACTTTTG
TAAAATAGAGCCCATGATTGCCTATTATTGTACGCCGATTGTTTATCTGC
TACTTCGAGTACATACATACCTGGATATGGGCATACGACACCCAGCGTTT
CCGTGGATTTTCCCGTGGTTGACCTGGCAGAGTTAGTTGTGCAGGGGAGG
TTGTGAGGTAAAATCAAAACATGAAACATCAACATCACCGACCGCAGGCA
TGTATACCCCTTGCAGGCGGTAGCAGTAGTTGTAGGCAGTGATATTGTAT
CACCTCCCTTTTTGGTATCAACCCCCGTCCTTGGAACCGTTTGCCGTGTT
CTTTTATTTAGGAAAACTTACCCTACGATTTCAAAATAGAAGAGTACAAC
TTGGCCTTCTACATGCTGGTTTCCCCTCAAATCTGGAGAACAACCGGATA
ATAATTGTTGCCTCGGAAAAACAAAATACCTGGTACCCACCTGGGGATCG
AACTCAGAATGCCGCAGTCTTTTTGGAAATCGTAGGGCCAGTTTTCCCAA
ACAAAATAACTACTCATCATATTTGGATTTACTGCGTGACGCTCAGCACA
ACCGCGAAATAGTTCTGCTCCACAGTGTTGACATCTGGGGCAGCCATTAG
TACGGTGATACCGGCATCTTTGCGAGTCGATTCCAGACTTTCACGGCGTG
TTTTGAGTGTACAAATGTCAGCCAATGTAGTACCTTCTGAAACCAAGTCT
ACATCGCCGAAGGACTTATCGAATTGTTCAGGTTCTTCGTCAATATCGTT
TTTCTTCGCTCAGCTTGTTTATCAATAACTTGCTGTTCTTTCGACGTGTA
CACTCTCCTCCGTTCGTCGTTTATATCACTGGCGTTGGCATCATATCCTC
CACATATTTGTTGCGCTCTTCGCACGCACACACGTTTCGAATGCTCTTTG
CGACGACACGCGTCAACCCCCGAACGCTCATCACCCAGACGTGTCGAATA
CGCTTGGCGGCGACACGCACGCGTTCACTTTCGTCTTTTGTGAAGCATGT
CGCTCACGCCTCTGTTGCCGAAAATTTGTTTACTCAATTACTAGATAGAG
ATTATTTATCCAACCCGCGCGTATTGAACAAAGCACAGATGACTGTGTAG
CCAGTAAAATAATTGGACGAATCGGCCTCGAATGGACTGGCTCTCCCTGT
GGCTGAATTTGGTGTATGTTCCGAAAATCGAACGCATCGCTGGTGCATGT
CATATCTATGTCCATCGGTGCGTACAGCTCATCGCGCGGGTAGTGGGAGA
TACTGACTTCACCCGGATAGATTTATCGACCCTTCCCCCGCATATCTTCA
TTGAATTACTCCTACCTGGCAGTGCCAAACGAAGATTGCTCCTCTCACGC
CGATAGATTGAAATTTGTACCAGTTTGTAAAACCGAACGCATCACTGGTG
CATGCCATGGCCGATGGGTGCGTACAGCTTATCGAGCGCATACCGAGCTC
ACCCTGGATACATGCATCATCCCTTCCCCCGCATCTCTCCACTACTACTA
CCCCTCCTTTGCAGTGCCAAACGAAGATTGCTCCTCACACGCCGGTGTGC
AGAGAAACGTTGCCTGGCAAATGTTGGTCAAATGTTTTGTGCACGGACCA
TACGTATATATATGCGAGGTTCCCCAGCAGCTGACTTGCCAACAAGACAA
GCATCTATTGAGAGGTATGGGACTGGCACAATGCGTGCTGTAGCACTTGA
CATGAAGAACAATGGGTGAGGTACACACTTTTCCTACCCCGCTGGGACTC
TACTACAACACTCCATCGTTCGCTCTTCCATTACGATAATTGTATACAAC
ATACTCTTCACAACAGGCGACGACAGCGGCTACGCTGAGGCCGGAGACAA
GACCACCGTTACTGCTATCGCCACTGCGTACGACGATCGCCCCGGGGAAG
AAAGCGATATGAACGGCTGCGGACAGGACGGATGCATGCCGGCTTTGGCC
CACGACGGCATCAGGGAAGACGTCGAGTCTAGGTGGTCGTGCTGCGAGGA
AATCGTGCCCGAAGGGGGCCAGTGCGAAATCGAGTTCATCTTCGACAGCC
CCCAGGACGTCAATGACATCCTAGTGGACTTTTGGAAGGGAGAAGAGCGC
TCGCGCTCCCTCAAGGTTAGGCACCGGACGTGTCGTTTGCCTGTGACTTC
GGGCGGTTGGTTTTCCCGCGGTCGGTCATGTGGGAAGCGCAGGAGACTGT
GGAAGGCCATTTTAGGCACAGCAACATTTTGCTTGAATTGTTTCCCGGCA
CAAAAATCAGTGGATAGCGCTTAGCGTGTGTACACAAACTCCGACCTCAC
CGTCGACGAGGGAAAGGGACGGACGGCTGAACCCTTCTCGCGACAAAAAT
CTTAGGAAAGCACCGCGGTCAGGGGGAGTGGGGGCCTTGGGGAAAGGAAC
TTCTGTGCGACCACGGTTCATTACCAACACCGTATTTGAGCCGAGTCCAA
ACTCTGATGTTGTCGGACTTTGTTTGGTCGGAGATTGGTAAAAATTTTCA
ATTTGAGCCACCCCATGGAAACACCACGTATTGTCTTGCTACATACATAG
GTGTTGATCAACGGGGAGAAGGTGGGGATGTTCGAGTCACAGCCTGGATC
TGTGACGACTTCACTCGGCATCGAATGGGACGGCGTGGAGACCGTCACCC
TCGAGTCGATGGGGCTAGACAAAGACGAGTGGCTCAGCCTGATCGAGGTT
AGTCGTCGACGAATGATTTTGACCACCCCCACTGGGGGCAGCAGTGCCAC
GAAAATGTGCCTCCCGTAAACCGTTGCAGTAAGACCGGGGGAGGGTCTGT
GTGAGACGAAACTCCGTGCGGCAAGAAAATTGCAGTAAGACCGGGGGAGG
GTCTGTGTGAGACGAAACTCCGTGCGGCAAGAAAATACCTTGTTTCAAAA
GTAATAGTGGTAATTGTGGCAAAATTACACAGAAAAAAGGCTGACTCGCA
ATCAATCCGTATGCCGTTTACGTGCATCTCTCTTTGTTGCCTTTCATCTT
GCAGGTGCGCTTCAACGTTGAAGCCTGAGCGGCTAGCCTACACAGAACAA
GCGCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6040:4855..8959-

>mRNA_L-elsbetiae_contig6040.14581.1 ID=mRNA_L-elsbetiae_contig6040.14581.1|Name=mRNA_L-elsbetiae_contig6040.14581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1236bp|location=Sequence derived from alignment at L-elsbetiae_contig6040:4855..8959- (Laminarionema elsbetiae ELsaHSoW15)
ATGACGAAGCAATGGCTGATGACCGTCGCCTTGTCGATCCTCTTCGCCAC
CACAGCGGCTGTGTCGAACGAGAGCGCTGCTGGTGCTGCTGCTGTTGATG
ACGAAGCAATGGCTGATGACCGTCGCCTTGTCGATCCTCTTCGCCACCAC
AGCGGCTGTGTCGAACGAGAGCGCTGCTGGTGCTGCTGCTGTTGAAAATA
CCGCCCGATCGCCGACCTTCAGAGGAAGCCGAAATTTGCAGGAAGAAAAT
ACCGCCCGATCGCCGACCTTCAGAGGAAGCCGAAATTTGCAGGAAGGCGA
CGACAGCGGCTACGCTGAGGCCGGAGACAAGACCACCGTTACTGCTATCG
CCACTGCGTACGACGATCGCCCCGGGGAAGAAAGCGATATGAACGGCTGC
GGACAGGACGGATGCATGCCGGCTTTGGCCCACGACGGCATCAGGGAAGA
CGTCGAGTCTAGGTGGTCGTGCTGCGAGGAAATCGTGCCCGAAGGGGGCC
AGTGCGAAATCGAGTTCATCTTCGACAGCCCCCAGGACGTCAATGACATC
CTAGTGGACTTTTGGAAGGGAGAAGAGCGCTCGCGCTCCCTCAAGGCGAC
GACAGCGGCTACGCTGAGGCCGGAGACAAGACCACCGTTACTGCTATCGC
CACTGCGTACGACGATCGCCCCGGGGAAGAAAGCGATATGAACGGCTGCG
GACAGGACGGATGCATGCCGGCTTTGGCCCACGACGGCATCAGGGAAGAC
GTCGAGTCTAGGTGGTCGTGCTGCGAGGAAATCGTGCCCGAAGGGGGCCA
GTGCGAAATCGAGTTCATCTTCGACAGCCCCCAGGACGTCAATGACATCC
TAGTGGACTTTTGGAAGGGAGAAGAGCGCTCGCGCTCCCTCAAGGTGTTG
ATCAACGGGGAGAAGGTGGGGATGTTCGAGTCACAGCCTGGATCTGTGAC
GACTTCACTCGGCATCGAATGGGACGGCGTGGAGACCGTCACCCTCGAGT
CGATGGGGCTAGACAAAGACGAGTGGCTCAGCCTGATCGAGGTGTTGATC
AACGGGGAGAAGGTGGGGATGTTCGAGTCACAGCCTGGATCTGTGACGAC
TTCACTCGGCATCGAATGGGACGGCGTGGAGACCGTCACCCTCGAGTCGA
TGGGGCTAGACAAAGACGAGTGGCTCAGCCTGATCGAGGTGCGCTTCAAC
GTTGAAGCCTGAGTGCGCTTCAACGTTGAAGCCTGA
back to top