mRNA_L-elsbetiae_contig604.14579.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Match: D7FU78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU78_ECTSI) HSP 1 Score: 268 bits (685), Expect = 8.710e-73 Identity = 214/394 (54.31%), Postives = 254/394 (64.47%), Query Frame = 2 Query: 2 LSSLKMLTGRELLQSKIKEALIYWDKLSERIPLKRHRPGGVRGRVTGSNDMFMDFDIDESEVPPQPPAGGNEVHLYQYHVQRLLCTVPRADWLRAQTAEGRVPLRANRLMAHLDAFRTKKPYGDKYLLKETNYTHKEFHGNLLESAAKTVCPGPVASGDAGDGTAAPGNGVTADGAAVTTGSTVTARGAGRSGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRTRPAAPTGSAASGGGEKIISQSFSGPSRGVVTFALYRSAAKGKGLRLPGQLPEKRLFEVEALAHNTLQQVV-------------------EAMPPCLADRIMEEKLADGCGEGRCDGDGGAPPGAP-APRKKSLSLGGGFLFIRGVFYVTRPAAGEASRPVP 1123 LSSL++L RELL SKI+EAL WDKL++ IPLKR RP G+ GR+ GS+DM++DFDIDE+ VP +PP G ++V LYQY+VQR++ VPRA+ L+ +T EG VPLR R+ LD KPYGD +LLKETN+ +E + E A G + DG AA A+G+A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A SG + I QSFSGPSR VVTFALYRSAAKGKGLRLPG LPEKRLFEVEAL HNTLQQ++ +AMPPCL DRIMEE+ CG+ + G PP P + R+K L+L GF+FIRGVFYVT+P AGE VP Sbjct: 65 LSSLRILPNRELLHSKIREALTCWDKLAQCIPLKRQRPEGLVGRMAGSDDMYLDFDIDETTVPLEPPQGVSDVQLYQYYVQRIMSAVPRANSLKGRTTEGPVPLRICRVKNQLD-IALSKPYGDIHLLKETNHISEEKRHRVAEEAFSRSAAGEAPNSR--DGVAAE---AVANGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGALSG---QRIFQSFSGPSRAVVTFALYRSAAKGKGLRLPGHLPEKRLFEVEALEHNTLQQIMGGWIIKESKNLMTNEWDERQAMPPCLTDRIMEERRQGCCGDAQ--GKVLMPPPEPGSSRQKGLALARGFVFIRGVFYVTKPTAGEDVSDVP 447
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Match: A0A6H5KIS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIS9_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.910e-34 Identity = 108/281 (38.43%), Postives = 127/281 (45.20%), Query Frame = 3 Query: 1980 GGAGQPTRSECGTTMKRKLGMGADGGEVVWATDATVADLRPMLGERYVFLHNRVCDHLFVVSDIRMEPVPDSAP-PDIPAXXXXXXXXXXXXXX-----------------------------------------------------------------------------RSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYDADRNPLEGELAGEAASAPSSGGGDEEQLGQGVRG-RAAGGPRGWKVFDCYDEH 2585 GG G E G M+++LG+ ADG YVFLH+R CDHLFVVSDIR+EPVP P P++ A XXXXXXX ++YPRLSF PN RRCG+C TKTAVK S GHPLSDKA L CC+ECF+ML+ D D+ PLEGELAG+ A+ P G QG +AAGGPRGW+VF CYDEH Sbjct: 162 GGKGGLAVCEQGQRMRKRLGLEADG---------------------YVFLHHRDCDHLFVVSDIRIEPVPVPPPEPELTAVHLSGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVGGGRGEGKKEEYPRLSFLSNPNCRRCGICLTKTAVKMSFGHPLSDKASLFCCQECFEMLHLDTDQKPLEGELAGDVATTPPPGDTTSPSPTQGPEASQAAGGPRGWRVFRCYDEH 421
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Match: A0A6H5KJY6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY6_9PHAE) HSP 1 Score: 106 bits (265), Expect = 5.110e-23 Identity = 53/105 (50.48%), Postives = 72/105 (68.57%), Query Frame = 2 Query: 2 LSSLKMLTGRELLQSKIKEALIYWDKLSERIPLKRHRPGGVRGRVTGSNDMFMDFDIDESEVPPQPPAGGNEVHLYQYHVQRLLCTVPRADWLRAQTAEGRVPLR 316 LSSL++L RELL SKI+EAL WDK + R + GS+DM++D+DIDE+ VPP+PP G ++V LYQY+VQR++ VPRA L+ +T EG +PLR Sbjct: 65 LSSLRILPNRELLHSKIREALTCWDKARQN-----------RTMMAGSDDMYLDYDIDETTVPPEPPQGVSDVQLYQYYVQRIMSAVPRAHSLKGRTTEGPIPLR 158
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Match: A0A6H5KW97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW97_9PHAE) HSP 1 Score: 95.1 bits (235), Expect = 1.460e-19 Identity = 47/51 (92.16%), Postives = 48/51 (94.12%), Query Frame = 2 Query: 758 QSFSGPSRGVVTFALYRSAAKGKGLRLPGQLPEKRLFEVEALAHNTLQQVV 910 QSFSGPSR VVTFALYRSAAKGKGLRLPG LPEKRLFEVEAL HNTLQQV+ Sbjct: 3 QSFSGPSRAVVTFALYRSAAKGKGLRLPGHLPEKRLFEVEALEHNTLQQVM 53
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Match: A0A6H5KHW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHW3_9PHAE) HSP 1 Score: 72.0 bits (175), Expect = 4.860e-12 Identity = 38/65 (58.46%), Postives = 46/65 (70.77%), Query Frame = 2 Query: 917 MPPCLADRIMEEKLADGCGEGRCDGDGGAPPGAP-APRKKSLSLGGGFLFIRGVFYVTRPAAGEA 1108 MPPCL DRIMEE+ CG+ + G PP P + R+K L+L GGF+FIRGVFYVT+P AGEA Sbjct: 1 MPPCLTDRIMEERRQGCCGDAQ--GKVLMPPPEPGSSRQKGLALAGGFVFIRGVFYVTKPTAGEA 63
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Match: A0A6T6L6W4_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A6T6L6W4_9RHOD) HSP 1 Score: 58.5 bits (140), Expect = 2.670e-5 Identity = 33/108 (30.56%), Postives = 50/108 (46.30%), Query Frame = 3 Query: 2106 LGERYVFLHNRVCDHLFVVSDIRMEPVPDSAPPDIPAXXXXXXXXXXXXXXRSPAQQYPRLSFRVKPNSRRCGVCYTKTAVKTSVGHPLSDKAPLGCCEECFDMLYYD 2429 L YVF+H +C+HL +++DIRM DI A+QYPRL R + R C +C A K G + ++P CE C+++L+Y+ Sbjct: 247 LARFYVFVHEEICEHLIMITDIRML--------DINVDLIN-------------AEQYPRLMSRARTMWRSCDICSNGRASKVVFGDRFAPESPCFFCEPCYNLLHYN 333 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig604.14579.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig604.14579.1 >prot_L-elsbetiae_contig604.14579.1 ID=prot_L-elsbetiae_contig604.14579.1|Name=mRNA_L-elsbetiae_contig604.14579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=592bp MLTGRELLQSKIKEALIYWDKLSERIPLKRHRPGGVRGRVTGSNDMFMDFback to top mRNA from alignment at L-elsbetiae_contig604:2406..12662+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig604.14579.1 ID=mRNA_L-elsbetiae_contig604.14579.1|Name=mRNA_L-elsbetiae_contig604.14579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10257bp|location=Sequence derived from alignment at L-elsbetiae_contig604:2406..12662+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig604:2406..12662+ >mRNA_L-elsbetiae_contig604.14579.1 ID=mRNA_L-elsbetiae_contig604.14579.1|Name=mRNA_L-elsbetiae_contig604.14579.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=3552bp|location=Sequence derived from alignment at L-elsbetiae_contig604:2406..12662+ (Laminarionema elsbetiae ELsaHSoW15)back to top |