mRNA_L-elsbetiae_contig6036.14574.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6036.14574.1
Unique NamemRNA_L-elsbetiae_contig6036.14574.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: D8LIK7_ECTSI (cGMP-dependent protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK7_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 1.460e-46
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGE G+ FYMIVKGTVDVLETS+D ET+ ERTK+LVQMFEGHYFGELALIYGEPRNASVRA
Sbjct:  318 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEDGDVFYMIVKGTVDVLETSMDPETDMERTKLLVQMFEGHYFGELALIYGEPRNASVRA 410
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A6H5L6T8_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6T8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 1.760e-28
Identity = 57/66 (86.36%), Postives = 62/66 (93.94%), Query Frame = 3 
Query:   84 DYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            ++IVRQGE G+ FYMIVKGTVDVLETSID ET+ ERTK+LVQMFEGHYFGELALIYGEPRNASVRA
Sbjct:  497 EFIVRQGEDGDVFYMIVKGTVDVLETSIDPETDMERTKLLVQMFEGHYFGELALIYGEPRNASVRA 562
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A8K1CBS9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBS9_PYTOL)

HSP 1 Score: 84.7 bits (208), Expect = 3.880e-17
Identity = 44/93 (47.31%), Postives = 57/93 (61.29%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA L      A+   LR   F+ G+YIVRQGE G  FYMI +G   VLE     + +E   + L  ++EGH FGE++LI+ EPR ASVRA
Sbjct:  414 VPLLARLSARDQDAVLNRLRPANFNDGEYIVRQGEEGTRFYMITRGEAVVLEKDTRPDAKENEERELTHLYEGHVFGEMSLIFSEPRTASVRA 506
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A835YIE0_9STRA (cGMP-dependent protein kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIE0_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 9.900e-17
Identity = 45/93 (48.39%), Postives = 60/93 (64.52%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA LP L+   L + L  + F  GD IV Q   G+ FYM++KG  DV +T +  E      + L  ++EGH+FGELALIYGEPRNA+V+A
Sbjct:  557 VPLLAKLPALAHGHLLRALVFKHFEPGDLIVEQDTPGDMFYMMMKGEADVSDT-VQAEDGLPADRFLTSLYEGHFFGELALIYGEPRNATVKA 648
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A067CHY5_SAPPC (cGMP-dependent protein kinase n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHY5_SAPPC)

HSP 1 Score: 81.3 bits (199), Expect = 6.360e-16
Identity = 47/93 (50.54%), Postives = 57/93 (61.29%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA L      A+ + L+   FS GDYIVRQGE G  FYMI +G   VLET      E E T+    ++EGH FGE++LIY EPR ASV A
Sbjct:  318 VPLLAQLTSRDQDAILKKLKPANFSNGDYIVRQGEEGTRFYMITRGEAAVLETHEPDGQERELTR----LYEGHVFGEMSLIYKEPRTASVVA 406
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: M4C5A1_HYAAE (cGMP-dependent protein kinase n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C5A1_HYAAE)

HSP 1 Score: 80.9 bits (198), Expect = 8.720e-16
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA L       + + LR   FS G+YIVRQG+ G  FYMI +G   V ET +  + ++   K L +++EGH FGE++LIY EPR ASVRA
Sbjct:  285 VPLLARLSPQDQDIVLKCLRPANFSDGEYIVRQGDEGTRFYMITRGEASVSETDVGPD-KKLYEKELTRLYEGHVFGEMSLIYSEPRTASVRA 376
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A0P1A571_PLAHL (cGMP-dependent protein kinase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1A571_PLAHL)

HSP 1 Score: 80.5 bits (197), Expect = 1.190e-15
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA L       + + LR   FS G+YIV QGE G  FYMI +G   VLE ++  + ++   K L +++EGH FGE++LIY EPR ASVRA
Sbjct:  376 VPLLARLSARDQDIVLKCLRPANFSDGEYIVHQGEEGTRFYMITRGEAIVLENALGPD-KKPYEKELTRLYEGHVFGEMSLIYSEPRTASVRA 467
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A1V9ZVW8_9STRA (cGMP-dependent protein kinase (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZVW8_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.550e-15
Identity = 46/93 (49.46%), Postives = 58/93 (62.37%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA+L      A+ + L+   FS G+YIVRQGE G  FYMI +G   VLET      E E T+    ++EGH FGE++LIY EPR ASV A
Sbjct:  321 VPLLAHLTSRDQDAVLKKLKPANFSNGEYIVRQGEEGTRFYMITRGEAAVLETHESDGKERELTR----LYEGHVFGEMSLIYKEPRTASVVA 409
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A662XZ02_9STRA (cGMP-dependent protein kinase n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XZ02_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.230e-15
Identity = 48/95 (50.53%), Postives = 59/95 (62.11%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLE--TSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA L       + + LR   FS G+YIVRQGE G  FYMI +G   V E  T  D +T E   K L +++EGH FGE++LIY EPR ASVRA
Sbjct:  517 VPLLARLSARDQDIVLKCLRPANFSDGEYIVRQGEEGTRFYMITRGEAIVSEKATGPDDKTFE---KELTRLYEGHVFGEMSLIYSEPRTASVRA 608
[Close]
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Match: A0A024UTS4_9STRA (cGMP-dependent protein kinase n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTS4_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.020e-15
Identity = 43/93 (46.24%), Postives = 58/93 (62.37%), Query Frame = 3 
Query:    3 IPLLANLPMLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTETEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA 281
            +PLLA L       +   L+   F+ G+YIV+QGE G  FYMI +G   V+ET  DT  ++E T+    ++EGH FGE++LIY EPR ASV A
Sbjct:  286 VPLLAQLSARDQDVVLTKLKPSNFAHGEYIVQQGEEGTRFYMITRGQAAVIETDADTGEDKELTR----LYEGHVFGEMSLIYKEPRTASVVA 374
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6036.14574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIK7_ECTSI1.460e-4691.40cGMP-dependent protein kinase n=1 Tax=Ectocarpus s... [more]
A0A6H5L6T8_9PHAE1.760e-2886.36Cyclic nucleotide-binding domain-containing protei... [more]
A0A8K1CBS9_PYTOL3.880e-1747.31Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A835YIE0_9STRA9.900e-1748.39cGMP-dependent protein kinase n=1 Tax=Tribonema mi... [more]
A0A067CHY5_SAPPC6.360e-1650.54cGMP-dependent protein kinase n=3 Tax=Saprolegniac... [more]
M4C5A1_HYAAE8.720e-1647.31cGMP-dependent protein kinase n=1 Tax=Hyaloperonos... [more]
A0A0P1A571_PLAHL1.190e-1547.31cGMP-dependent protein kinase n=1 Tax=Plasmopara h... [more]
A0A1V9ZVW8_9STRA1.550e-1549.46cGMP-dependent protein kinase (Fragment) n=1 Tax=T... [more]
A0A662XZ02_9STRA2.230e-1550.53cGMP-dependent protein kinase n=2 Tax=Nothophytoph... [more]
A0A024UTS4_9STRA3.020e-1546.24cGMP-dependent protein kinase n=2 Tax=Aphanomyces ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6036contigL-elsbetiae_contig6036:2209..3308 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.0
Seed ortholog evalue7.9e-36
Seed eggNOG ortholog2880.D8LIK7
Preferred namespnA
KEGG koko:K01090,ko:K07359,ko:K14803,ko:K17500
KEGG Pathwayko04140,ko04152,ko04211,ko04920,ko04921,ko05034,map04140,map04152,map04211,map04920,map04921,map05034
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0000287,GO:0001101,GO:0001726,GO:0001882,GO:0001883,GO:0002682,GO:0002697,GO:0002831,GO:0003674,GO:0003824,GO:0004721,GO:0004722,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0008150,GO:0008152,GO:0009414,GO:0009415,GO:0009628,GO:0009651,GO:0009653,GO:0009719,GO:0009725,GO:0009737,GO:0009889,GO:0009987,GO:0010033,GO:0010035,GO:0010468,GO:0010556,GO:0016020,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017076,GO:0019001,GO:0019219,GO:0019222,GO:0019538,GO:0030145,GO:0030154,GO:0031252,GO:0031323,GO:0031326,GO:0031347,GO:0032101,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0033554,GO:0033993,GO:0035639,GO:0036094,GO:0036211,GO:0042221,GO:0042578,GO:0042995,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043618,GO:0043620,GO:0043900,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0046872,GO:0046914,GO:0048583,GO:0048856,GO:0048869,GO:0050688,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051252,GO:0051716,GO:0060255,GO:0061392,GO:0061416,GO:0065007,GO:0071214,GO:0071470,GO:0071472,GO:0071704,GO:0080090,GO:0080134,GO:0097159,GO:0097305,GO:0097367,GO:0104004,GO:0120025,GO:0140096,GO:1901265,GO:1901363,GO:1901564,GO:1901700,GO:1903506,GO:2000112,GO:2001141
EggNOG free text desc.peptidyl-threonine phosphorylation
EggNOG OGsCOG0631@1,KOG0585@1,KOG0585@2759,KOG0698@2759
EC2.7.11.17,3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03009
Exons3
Model size282
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6036.14574.1prot_L-elsbetiae_contig6036.14574.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6036 2209..3282 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.8007286-CDS-L-elsbetiae_contig6036:2208..23091622816658.8007286-CDS-L-elsbetiae_contig6036:2208..2309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6036 2209..2309 -
1691683718.9382997-CDS-L-elsbetiae_contig6036:2208..23091691683718.9382997-CDS-L-elsbetiae_contig6036:2208..2309Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6036 2209..2309 -
1622816658.8133605-CDS-L-elsbetiae_contig6036:2536..26301622816658.8133605-CDS-L-elsbetiae_contig6036:2536..2630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6036 2537..2630 -
1691683718.953008-CDS-L-elsbetiae_contig6036:2536..26301691683718.953008-CDS-L-elsbetiae_contig6036:2536..2630Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6036 2537..2630 -
1622816658.8238037-CDS-L-elsbetiae_contig6036:3222..32821622816658.8238037-CDS-L-elsbetiae_contig6036:3222..3282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6036 3223..3282 -
1691683718.9630585-CDS-L-elsbetiae_contig6036:3222..32821691683718.9630585-CDS-L-elsbetiae_contig6036:3222..3282Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6036 3223..3282 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.836873-UTR-L-elsbetiae_contig6036:3282..33081622816658.836873-UTR-L-elsbetiae_contig6036:3282..3308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6036 3283..3308 -
1691683719.001691-UTR-L-elsbetiae_contig6036:3282..33081691683719.001691-UTR-L-elsbetiae_contig6036:3282..3308Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6036 3283..3308 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6036.14574.1

>prot_L-elsbetiae_contig6036.14574.1 ID=prot_L-elsbetiae_contig6036.14574.1|Name=mRNA_L-elsbetiae_contig6036.14574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MLSLHALQQTLRHQTFSAGDYIVRQGEAGETFYMIVKGTVDVLETSIDTE
TEEERTKVLVQMFEGHYFGELALIYGEPRNASVRA
back to top

mRNA from alignment at L-elsbetiae_contig6036:2209..3308-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6036.14574.1 ID=mRNA_L-elsbetiae_contig6036.14574.1|Name=mRNA_L-elsbetiae_contig6036.14574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1100bp|location=Sequence derived from alignment at L-elsbetiae_contig6036:2209..3308- (Laminarionema elsbetiae ELsaHSoW15)
AGATCCCCCTGCTAGCAAACTTGCCGATGCTCTCCCTGCATGCGCTCCAG
CAGACGTTGCGGCACCAAACGTTTTCCGCGGGAGATGTACGTTGTCGTGT
TTCTTTTGTTTGAGAGGCTATAGGATAAACATGAAGCCCCTTTGTGCCTT
TTCTTCCTCTTCCGCCTTCTGCTTGTCTTTCATGGCTACAAGTTTTTGTT
TTGTACGGTGCCTTGTCGTGTAATCATTCGGACCGACACTGGCCCTGTTG
CAGGTGGTTCGTATCACCGTATTTTACGAATCTAATGGGTAAACATTGCC
GGCATGGCATGTCAACATTGCCGGCGTGGCATGTTAATTCAATGTTGAAA
CTCGTAATGTGCACTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGTACTACGCTTTCGTGTTTGTTTTCCCTTCAGGCTGGTAGTCTGCAAGG
AGAAACTGCATTACTTGTTTTGTCTGTGCTCTTCGAGCTACACACCCGTG
TTGTGCTTGCCTCTCACCCTCTTCTCATCGGTCTCCATGTCACGTGCGTG
GCCCCCGGCTGTCTGGCCCAACTTTTGTCTGTTCTGCGCCTCAACGACAA
CGACCCAACGACGACGGCGACGGCAACAACAACAACAACAACAACAACAA
CAACAAACAATAACTACAACGAGAGCAGTACATCGTTCGGCAGGGGGAGG
CCGGAGAGACTTTCTACATGATTGTCAAGGGCACCGTCGACGTTCTGGAA
ACATCCATCGACACCGAAACTGGTGAATATAGATTACCAGCATGATCGTC
ATTATCCAGTTGATTGTTTTTTGGGGGAGGTCGAATTTCTTGTACCGTTT
CTTTGTCGACACCAAGAAAGCGGCGCCCGGGGGTGGAGTTGTCCTAATTT
GTCGTTTTAAGCCAAATAGAAGCACGTTGCTCCTTCCTTGGCCGGAAAGC
CTGTCAAATCAGCGTCTCTCATGTTGATATTACCAAAACAAACGTGCAGA
GGAGGAGAGGACCAAAGTCCTGGTGCAGATGTTCGAGGGTCACTACTTCG
GGGAGCTTGCTCTCATCTACGGAGAACCTAGGAACGCGAGCGTCAGGGCT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6036:2209..3308-

>mRNA_L-elsbetiae_contig6036.14574.1 ID=mRNA_L-elsbetiae_contig6036.14574.1|Name=mRNA_L-elsbetiae_contig6036.14574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig6036:2209..3308- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCTCCCTGCATGCGCTCCAGCAGACGTTGCGGCACCAAACGTTTTC
CGCGGGAGATATGCTCTCCCTGCATGCGCTCCAGCAGACGTTGCGGCACC
AAACGTTTTCCGCGGGAGATTACATCGTTCGGCAGGGGGAGGCCGGAGAG
ACTTTCTACATGATTGTCAAGGGCACCGTCGACGTTCTGGAAACATCCAT
CGACACCGAAACTGTACATCGTTCGGCAGGGGGAGGCCGGAGAGACTTTC
TACATGATTGTCAAGGGCACCGTCGACGTTCTGGAAACATCCATCGACAC
CGAAACTGAGGAGGAGAGGACCAAAGTCCTGGTGCAGATGTTCGAGGGTC
ACTACTTCGGGGAGCTTGCTCTCATCTACGGAGAACCTAGGAACGCGAGC
GTCAGGGCTAGGAGGAGAGGACCAAAGTCCTGGTGCAGATGTTCGAGGGT
CACTACTTCGGGGAGCTTGCTCTCATCTACGGAGAACCTAGGAACGCGAG
CGTCAGGGCT
back to top