mRNA_L-elsbetiae_contig6033.14572.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6033.14572.1
Unique NamemRNA_L-elsbetiae_contig6033.14572.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6033.14572.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6033contigL-elsbetiae_contig6033:3683..4754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size530
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6033.14572.1prot_L-elsbetiae_contig6033.14572.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6033 4334..4687 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.6836627-UTR-L-elsbetiae_contig6033:3682..37681622816658.6836627-UTR-L-elsbetiae_contig6033:3682..3768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6033 3683..3768 +
1691683718.858609-UTR-L-elsbetiae_contig6033:3682..37681691683718.858609-UTR-L-elsbetiae_contig6033:3682..3768Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6033 3683..3768 +
1622816658.6942067-UTR-L-elsbetiae_contig6033:4310..43331622816658.6942067-UTR-L-elsbetiae_contig6033:4310..4333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6033 4311..4333 +
1691683718.870622-UTR-L-elsbetiae_contig6033:4310..43331691683718.870622-UTR-L-elsbetiae_contig6033:4310..4333Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6033 4311..4333 +
1622816658.717091-UTR-L-elsbetiae_contig6033:4687..47541622816658.717091-UTR-L-elsbetiae_contig6033:4687..4754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6033 4688..4754 +
1691683718.8925638-UTR-L-elsbetiae_contig6033:4687..47541691683718.8925638-UTR-L-elsbetiae_contig6033:4687..4754Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6033 4688..4754 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816658.7040071-CDS-L-elsbetiae_contig6033:4333..46871622816658.7040071-CDS-L-elsbetiae_contig6033:4333..4687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6033 4334..4687 +
1691683718.8804762-CDS-L-elsbetiae_contig6033:4333..46871691683718.8804762-CDS-L-elsbetiae_contig6033:4333..4687Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6033 4334..4687 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6033.14572.1

>prot_L-elsbetiae_contig6033.14572.1 ID=prot_L-elsbetiae_contig6033.14572.1|Name=mRNA_L-elsbetiae_contig6033.14572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
MEKMWGWWLHRDIARQHRPGQQRRGCNHAASSCRFVRRGELDKKERFRKA
QRRSPVQGQIYGRWRPRKLGVSGGTALAPYAKKSGDAKTTGTPRVRRLAA
SSLLKKSRRRKAGVSFG*
back to top

mRNA from alignment at L-elsbetiae_contig6033:3683..4754+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6033.14572.1 ID=mRNA_L-elsbetiae_contig6033.14572.1|Name=mRNA_L-elsbetiae_contig6033.14572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1072bp|location=Sequence derived from alignment at L-elsbetiae_contig6033:3683..4754+ (Laminarionema elsbetiae ELsaHSoW15)
GCTTGACGTACGAAGACGGCCGAGGGGGCGCGCTCGCCAACAACTTCTTC
GTAAAAGAGCTTCACTACTCGTCAGCGAACCCCAGCGTGAGTGTGAACTT
CACGCGGAGGGGAGCTCGTGCTTGAAGAGCGACGCTTTATCGCTTAGATA
CACTGATTCCACTGCTGTAGTGTACTCGGCGCTTACTCTGTGCACGACAG
CTAGGCCTCTTTCTTCTGGGTTTCGCAGTCGGGGTTGGAAGGGGCTCTTG
GTGGGAACAGCAGAAAATTGTCATCGTGAAGCTGGGTGGCACACGCTGGA
GAGTTTTAGAGCAGGCCAAACCAAGAACCTACTATGTACAAGAACGTGTT
TGAATGACATTGCCATGGATTCGAGAAATGCGTTGATCGCGAACTGATGT
ACAGTACTACCTTCGGAAGTGTCCAACGATACAAGATTCGGGGGGCCAAC
CTCATGGAAGGCCAGGGATATGGTCACCAATCGCTGGAGTAGTATCGTTG
AGTTACTTTTTAACCTTCACTCCCCTGGGGAGCGGCTCTTGCATTGTTTC
GGTGAAAAAGAATCACGGCGGCCTCTCGCGCGACCCTAAAGATCCTGTAC
CTCTCGTGCTTCGCATGGCGTGTCGCAGTACCACAAGACGAGCAGGCGGC
GATGGAGAAGATGTGGGGGTGGTGGCTGCACCGTGACATAGCACGACAAC
ACCGACCCGGGCAGCAGCGGCGGGGCTGCAACCATGCCGCATCTAGTTGC
CGTTTCGTTCGGAGAGGAGAGCTCGACAAAAAGGAGAGGTTTCGGAAGGC
ACAGCGACGGAGTCCAGTTCAAGGCCAAATCTACGGGCGGTGGCGCCCTC
GGAAACTCGGTGTCTCGGGGGGTACAGCGCTTGCACCGTATGCGAAGAAG
AGCGGGGACGCCAAAACAACCGGGACCCCAAGAGTTCGGCGCCTTGCGGC
TAGCTCTCTCCTTAAGAAAAGTAGGCGGAGGAAAGCCGGAGTGTCCTTTG
GTTAGTCTTTCCCAAGTTGGCGACAGACAGCAGCAGAACATTTAGCCGGC
ATGCTGTACTCCTGTAAGAGTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6033:3683..4754+

>mRNA_L-elsbetiae_contig6033.14572.1 ID=mRNA_L-elsbetiae_contig6033.14572.1|Name=mRNA_L-elsbetiae_contig6033.14572.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig6033:3683..4754+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAAGATGTGGGGGTGGTGGCTGCACCGTGACATAGCACGACAACA
CCGACCCGGGCAGCAGCGGCGGGGCTGCAACCATGCCGCATCTAGTTGCC
GTTTCGTTCGGAGAGGAGAGCTCGACAAAAAGGAGAGGTTTCGGAAGGCA
CAGCGACGGAGTCCAGTTCAAGGCCAAATCTACGGGCGGTGGCGCCCTCG
GAAACTCGGTGTCTCGGGGGGTACAGCGCTTGCACCGTATGCGAAGAAGA
GCGGGGACGCCAAAACAACCGGGACCCCAAGAGTTCGGCGCCTTGCGGCT
AGCTCTCTCCTTAAGAAAAGTAGGCGGAGGAAAGCCGGAGTGTCCTTTGG
TTAGATGGAGAAGATGTGGGGGTGGTGGCTGCACCGTGACATAGCACGAC
AACACCGACCCGGGCAGCAGCGGCGGGGCTGCAACCATGCCGCATCTAGT
TGCCGTTTCGTTCGGAGAGGAGAGCTCGACAAAAAGGAGAGGTTTCGGAA
GGCACAGCGACGGAGTCCAGTTCAAGGCCAAATCTACGGGCGGTGGCGCC
CTCGGAAACTCGGTGTCTCGGGGGGTACAGCGCTTGCACCGTATGCGAAG
AAGAGCGGGGACGCCAAAACAACCGGGACCCCAAGAGTTCGGCGCCTTGC
GGCTAGCTCTCTCCTTAAGAAAAGTAGGCGGAGGAAAGCCGGAGTGTCCT
TTGGTTAG
back to top