mRNA_L-elsbetiae_contig6021.14553.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: D7G8R0_ECTSI (Small Conductance Mechanosensitive Ion channel n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8R0_ECTSI) HSP 1 Score: 327 bits (838), Expect = 3.490e-105 Identity = 176/224 (78.57%), Postives = 186/224 (83.04%), Query Frame = 1 Query: 442 RCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATMTSVLYVDMNDPAPIGKAPLAGMINPAPAQSAPQSGLPPSVAAPQVLARGGSDTKLLEEQDGAVQVQINGTSGSSGAKXXXX--KARGGAV 1107 RCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEI+QGIK ALKDVPN+DLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLE TRVVQ ASATMTSVLYVDMN+PAPIGK PLAGMIN A + QSGLP VAAP+ L G++ +EE DG + G SG S + K RGG V Sbjct: 237 RCEGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEILQGIKTALKDVPNIDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLEVTRVVQGASATMTSVLYVDMNNPAPIGKVPLAGMINSAQNKGVAQSGLPKVVAAPKDLNPKGAEGASIEE-DGPRPINGTGVSGGSSVQKSRRVKKPRGGTV 459
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A4D9D8J2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8J2_9STRA) HSP 1 Score: 172 bits (437), Expect = 3.720e-45 Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVV 822 EG+VERVG+YQTRLRGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D + E+I IK AL+ +P VD+LSPFRVH F L + CYFATKS DE+LYLQQ+AL+E TRVV Sbjct: 218 EGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVV 342
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: W7UBI9_9STRA (Small-conductance mechanosensitive channel n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UBI9_9STRA) HSP 1 Score: 172 bits (437), Expect = 4.030e-44 Identity = 84/125 (67.20%), Postives = 99/125 (79.20%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVV 822 EG+VERVG+YQTRLRGRDTRPTYVPN +F DTMVTNMDRITHR+FE+SF LR+ D + E+I IK AL+ +P VD+LSPFRVH F L + CYFATKS DE+LYLQQ+AL+E TRVV Sbjct: 408 EGKVERVGFYQTRLRGRDTRPTYVPNSVFVDTMVTNMDRITHRRFEASFSLRFQDFETLPEVILEIKKALRVLPKVDVLSPFRVHFTQFGSYCLSLTASCYFATKSLDEYLYLQQLALMEITRVV 532
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A6U0TNP3_9STRA (Hypothetical protein n=2 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0TNP3_9STRA) HSP 1 Score: 155 bits (393), Expect = 1.270e-38 Identity = 76/130 (58.46%), Postives = 92/130 (70.77%), Query Frame = 1 Query: 451 GRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASAT 840 G+VERVGWYQTR+R RDTRP YVPN F +TMVTNMDRITHRKFES F ++ +V ++ IK AL+ P +DLLSPFR +L+ GL+ +V+CYFATKS DEFL LQQ LE R V+S T Sbjct: 291 GKVERVGWYQTRIRNRDTRPVYVPNAFFVNTMVTNMDRITHRKFESEFHIQLDSFAQVEGLLDDIKIALQGFPKLDLLSPFRANLIAVESDGLRFSVLCYFATKSLDEFLMLQQKVFLEVGRCVESRGLT 420
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A7S0SR49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SR49_9STRA) HSP 1 Score: 141 bits (356), Expect = 7.850e-35 Identity = 72/132 (54.55%), Postives = 90/132 (68.18%), Query Frame = 1 Query: 451 GRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLS-PFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATM 843 GRVERVGW QTR+RGRDTRPTYVPN F T VTNM+RITHRKFE+ LRY D +++++ IK L+ +P +D ++ PFR V L I V CYF+TKS DEFL LQQ A LE + V S +A++ Sbjct: 149 GRVERVGWGQTRIRGRDTRPTYVPNSHFVQTAVTNMERITHRKFEAIVPLRYQDHAVMSDVVTKIKEGLRKIPKLDTMTQPFRCSFVKVGSYSLDIEVTCYFSTKSIDEFLPLQQAANLEIIKAVYSCNASL 280
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A0C1JTY6_9BACT (MscS family inner membrane protein YnaI n=1 Tax=Candidatus Protochlamydia amoebophila TaxID=362787 RepID=A0A0C1JTY6_9BACT) HSP 1 Score: 88.2 bits (217), Expect = 3.910e-17 Identity = 47/132 (35.61%), Postives = 72/132 (54.55%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATM 843 EG VE +GWY TR+R D RP YVPN +F+ T+V R++H +F + LRY+D + +I+ IK L P VD V+ V F + L I++ Y D F ++Q LL+ +++S A++ Sbjct: 2 EGHVEEIGWYMTRIRNLDKRPIYVPNSVFTQTIVITPSRMSHERFFHTIGLRYSDIDSIKQIVADIKLMLLKHPQVDHEQRVDVYFVSFGDFALNISISAYIHLGQAD-FPSIRQDILLKIADLIRSHGASI 132
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A259G988_9PROT (Uncharacterized protein n=2 Tax=unclassified Hydrogenophilales TaxID=1798413 RepID=A0A259G988_9PROT) HSP 1 Score: 92.0 bits (227), Expect = 1.800e-16 Identity = 50/145 (34.48%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATM---TSVLYVDMND 873 EG VE + W QTR+RG + P YVPN +F+ +V N R++HR+ + + LRYAD KVA ++ GI++ L+ P +D V+ + S L I V + T ++ ++ ++Q LL+ VV + A + T L+V++ D Sbjct: 432 EGTVEHISWRQTRIRGFNKNPIYVPNALFTSLIVENPSRMSHRRIKETLGLRYADFDKVAAVVAGIRSMLESHPAIDSSQTLIVNFNTYGASSLDILVYTFTHTTAWVDYQAVKQDVLLKMGEVVAAHGAQLAFPTQTLHVELPD 576
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A6F8PV04_9GAMM (Mechanosensitive ion channel protein MscS n=1 Tax=Thiosulfatimonas sediminis TaxID=2675054 RepID=A0A6F8PV04_9GAMM) HSP 1 Score: 90.9 bits (224), Expect = 1.800e-16 Identity = 47/145 (32.41%), Postives = 84/145 (57.93%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATM---TSVLYVDMND 873 EG VE++GW T +R D RP Y+PNG+F++ + N R+++R+ + + +RYADA K+A+I+Q ++A L++ P +D V+ F S L + + T + F ++Q LL+ +V+S A M T L++++ + Sbjct: 227 EGTVEKIGWRMTTVRTFDKRPLYIPNGIFANIAIENPSRMSNRRIKETMGIRYADADKMAKIVQDVRAMLQNHPEIDTEETLIVNFNGFNHSSLDFFIYTFTKTTQWVLFHEIKQDVLLKVMAIVESNGAQMAFPTRTLHLEVEN 371
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A1G0N8B6_9PROT (Mechanosensitive ion channel protein MscS n=1 Tax=Hydrogenophilales bacterium RIFOXYD1_FULL_62_11 TaxID=1798415 RepID=A0A1G0N8B6_9PROT) HSP 1 Score: 90.5 bits (223), Expect = 2.040e-16 Identity = 51/147 (34.69%), Postives = 83/147 (56.46%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATM---TSVLYVDMNDPA 879 EG VE + W QTR+RG + P YVPN +F+ +V N R++HR+ + + LRYAD KVA ++ GI+A L+ P++D V+ + S L I V + T ++ ++ ++Q LL+ VV A + T L+V++ + A Sbjct: 215 EGTVEHISWRQTRIRGFNKNPIYVPNALFTSLIVENPSRMSHRRIKETIGLRYADFDKVAAVVAGIRAMLEAHPDIDCNQTLIVNFNAYGASSLDIMVYTFTHTTAWVDYQAVKQDVLLKMGEVVLVHGAEIAFPTQTLHVELPETA 361
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Match: A0A1N6F138_9GAMM (MscS family membrane protein n=1 Tax=Sulfurivirga caldicuralii TaxID=364032 RepID=A0A1N6F138_9GAMM) HSP 1 Score: 90.1 bits (222), Expect = 3.220e-16 Identity = 46/132 (34.85%), Postives = 76/132 (57.58%), Query Frame = 1 Query: 448 EGRVERVGWYQTRLRGRDTRPTYVPNGMFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDLLSPFRVHLVDFAESGLKINVVCYFATKSFDEFLYLQQVALLETTRVVQSASATM 843 EG VE +GW +T +R + P YVPNG+F++ +V N R++HR+ F +RY D KVA+I I+ L++ P++D V+ FA+S L+ V C+ T + E+ +++ LL+ +V + A M Sbjct: 231 EGTVEHIGWRRTVIRRFNKNPLYVPNGLFTNIVVENPSRMSHRRIYEKFGVRYGDQDKVAKITADIRQMLQNHPDIDQTQTIIVNFNTFADSSLECFVYCFTRTTVWVEYHQVKEAVLLQIADIVVAHGAEM 362 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6021.14553.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig6021.14553.1 >prot_L-elsbetiae_contig6021.14553.1 ID=prot_L-elsbetiae_contig6021.14553.1|Name=mRNA_L-elsbetiae_contig6021.14553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp MFSDTMVTNMDRITHRKFESSFQLRYADAPKVAEIIQGIKAALKDVPNVDback to top mRNA from alignment at L-elsbetiae_contig6021:7984..9640- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig6021.14553.1 ID=mRNA_L-elsbetiae_contig6021.14553.1|Name=mRNA_L-elsbetiae_contig6021.14553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1657bp|location=Sequence derived from alignment at L-elsbetiae_contig6021:7984..9640- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig6021:7984..9640- >mRNA_L-elsbetiae_contig6021.14553.1 ID=mRNA_L-elsbetiae_contig6021.14553.1|Name=mRNA_L-elsbetiae_contig6021.14553.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig6021:7984..9640- (Laminarionema elsbetiae ELsaHSoW15)back to top |