mRNA_L-elsbetiae_contig6021.14552.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6021.14552.1
Unique NamemRNA_L-elsbetiae_contig6021.14552.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: D7G8R1_ECTSI (Macro domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8R1_ECTSI)

HSP 1 Score: 269 bits (687), Expect = 1.230e-79
Identity = 169/261 (64.75%), Postives = 185/261 (70.88%), Query Frame = 3
Query:  342 MLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLEAVAEADGDASPDEPG----STEPEPKTKEEGEGTKGEDAQEEVAAETSPPESEAAGAATQALEGDEKPKASE----PIALAGEAAEGPGASTVEPMSQEESLGGLDGFAEEG 1100
            MLGGGGVDGAIHRAAG +LL+ACY VEP  NS  IRCPTGEARITPGFRL AK+VIHTVGPVYE  E SAPLLR AIK+SLLLC+EN +KSVAFPAISCG+YGYPA EAAEIAI+TMLEFSEGIDLIEFVLFGKDTY PF   ASEKL AV + D   SPD+      S+  EPKT +EG       A    + E S     A GAA   LE  +KP+  E    P     E  EG GA  VEPMSQEE+ G LDG  EEG
Sbjct:   76 MLGGGGVDGAIHRAAGRDLLKACYDVEP--NSEDIRCPTGEARITPGFRLPAKFVIHTVGPVYENKEVSAPLLRSAIKNSLLLCKENGVKSVAFPAISCGVYGYPAGEAAEIAIDTMLEFSEGIDLIEFVLFGKDTYNPFMKKASEKL-AVVKEDSGGSPDDSNAPKASSTSEPKTVDEG-------APNTASGEVSV---SAGGAAAPTLEEKQKPEEPECAKPPAGPTSE--EGDGA--VEPMSQEETFGTLDGSVEEG 319          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: W9S9J7_9ROSA (Macro domain-containing protein n=3 Tax=Morus notabilis TaxID=981085 RepID=W9S9J7_9ROSA)

HSP 1 Score: 178 bits (452), Expect = 1.040e-48
Identity = 86/151 (56.95%), Postives = 112/151 (74.17%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLEA 791
            +MLGGGG DGAIHRAAG +LL+ACY V  V  S G+RCPTGEARITPGFRL   +V+ TVGP+Y G  T+   LR   ++SL + +ENN++ +AFPAISCG+YGYP DEA+ +AI T+ EF+ GI  + FVLF +D Y+ +   A+E L+A
Sbjct:   49 RMLGGGGADGAIHRAAGPDLLQACYGVPEV--SPGVRCPTGEARITPGFRLPVAHVVFTVGPMYNGRSTAEAALRNTYRNSLKIAKENNIQYIAFPAISCGVYGYPYDEASTVAISTIKEFANGIKEVHFVLFQEDIYSVWLNKANELLKA 197          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: A0A218XS45_PUNGR (Macro domain-containing protein n=2 Tax=Punica granatum TaxID=22663 RepID=A0A218XS45_PUNGR)

HSP 1 Score: 180 bits (457), Expect = 2.990e-48
Identity = 89/150 (59.33%), Postives = 111/150 (74.00%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLE 788
            +MLGGGG DGAIHRAAG ELLEACY V  V    GIRCPTGEARITPGF+L A +VIHTVGP+Y+  +     LR A K+SL + +ENN++ +AFPAISCG+YGYP DEAA +AI T+ EFS+G+  + FVLF  + Y  + + A E L+
Sbjct:  140 RMLGGGGADGAIHRAAGPELLEACYKVPEV--RPGIRCPTGEARITPGFKLPASHVIHTVGPIYDTDKNPQESLRSAYKNSLAVAKENNIQYIAFPAISCGVYGYPYDEAAAVAISTVEEFSDGLKEVHFVLFSDEIYDAWSSKAKELLQ 287          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: A0A6J1JJ63_CUCMA (uncharacterized protein LOC111484918 n=2 Tax=Cucurbita TaxID=3660 RepID=A0A6J1JJ63_CUCMA)

HSP 1 Score: 177 bits (448), Expect = 1.660e-47
Identity = 86/148 (58.11%), Postives = 108/148 (72.97%), Query Frame = 3
Query:  342 MLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKL 785
            MLGGGG DGAIH AAG +L++ACY+V+ V    GIRCPTGEARITPGFRL A +VIHTVGP+Y        LLR A ++SL + +ENN++ +AFPAISCG+Y YP DEAA IA+ T+ EFS G+  + FVL+  D Y  +  TA+E L
Sbjct:   98 MLGGGGADGAIHNAAGPDLVQACYSVQEV--QPGIRCPTGEARITPGFRLPASHVIHTVGPIYNVNSNPQALLRSAYRNSLAVAKENNIQYIAFPAISCGVYRYPFDEAATIALSTVKEFSNGLKEVHFVLYSSDIYNVWLETANELL 243          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: A0A8B8PZY6_9MYRT (uncharacterized protein LOC115748117 n=1 Tax=Rhodamnia argentea TaxID=178133 RepID=A0A8B8PZY6_9MYRT)

HSP 1 Score: 176 bits (447), Expect = 1.870e-47
Identity = 90/151 (59.60%), Postives = 111/151 (73.51%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAV-EPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLE 788
            +MLGGGG DGAIHRAAG ELLEACY V E +P   GIRCPTGEARITPGFR+ A +VIH VGP+Y+G   S   LR A ++SL++ +E  L+ VAFPAISCG++GYP DEAA IAI T+ E S+G+  + FVLF  D Y  + + A E L+
Sbjct:   90 RMLGGGGADGAIHRAAGPELLEACYKVPEVLP---GIRCPTGEARITPGFRVPASHVIHAVGPIYDGGSNSQASLRNAYRNSLMVAKEKELQYVAFPAISCGVFGYPYDEAATIAISTIKESSDGLKEVHFVLFSDDIYNVWVSKAKELLQ 237          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: A0A5C7GZP7_9ROSI (Macro domain-containing protein n=1 Tax=Acer yangbiense TaxID=1000413 RepID=A0A5C7GZP7_9ROSI)

HSP 1 Score: 174 bits (442), Expect = 3.160e-47
Identity = 85/151 (56.29%), Postives = 110/151 (72.85%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLEA 791
            +MLGGGG DGAIHRAAG +L EACY V  V +  G+RCPTGEARITPGF+L A +VIHTVGP+Y+     A LLR + K+SL + +ENN++ +AFPAISCG++GYP +EAA +AI T+ EF+     + FVLF  D Y+ +   A E L+A
Sbjct:   51 RMLGGGGADGAIHRAAGPQLREACYKVPEVRS--GVRCPTGEARITPGFKLPASHVIHTVGPIYDVHSNPAALLRSSYKNSLSVAKENNIQYIAFPAISCGVFGYPFEEAATVAISTIKEFANDFKEVHFVLFADDIYSVWLKKAKELLQA 199          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: UPI0011D2ACB0 (uncharacterized protein LOC115663435 n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2ACB0)

HSP 1 Score: 176 bits (446), Expect = 5.110e-47
Identity = 89/150 (59.33%), Postives = 107/150 (71.33%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLE 788
            +MLGGGG DGAIHRAAG ELLEACY V  V    GIRCPTGEARIT GFRL A +VIHTVGP+Y+        LR A ++SL++ +E  L+ VAFPAISCG+YGYP DEAA IAI T+ E S+G+  + FVLF  D Y  + + A E L+
Sbjct:  113 RMLGGGGADGAIHRAAGPELLEACYKVPEV--RPGIRCPTGEARITAGFRLPASHVIHTVGPIYDADSNPQASLRNAYRNSLMVAKEKKLQHVAFPAISCGVYGYPYDEAATIAISTLKESSDGLKEVHFVLFSDDIYNAWLSKAKELLQ 260          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: UPI0002B4627A (uncharacterized protein LOC101210287 n=1 Tax=Cucumis sativus TaxID=3659 RepID=UPI0002B4627A)

HSP 1 Score: 175 bits (443), Expect = 9.080e-47
Identity = 84/149 (56.38%), Postives = 110/149 (73.83%), Query Frame = 3
Query:  342 MLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLE 788
            MLGGGG DGAIH AAG +L++ACY+V+ V    GIRCPTGEARITPGF+L A +VIHTVGP+Y  +     LLR A ++SL + +ENN++ +AFPAISCG++ YP DEAA IA+ T+ EFS+G+  + FVL+  D Y  +   A+E LE
Sbjct:  100 MLGGGGADGAIHNAAGPDLIQACYSVQEV--QPGIRCPTGEARITPGFQLPASHVIHTVGPIYNASRNPQALLRSAYRNSLAVAKENNIQYIAFPAISCGVFRYPYDEAATIALSTIKEFSQGLKEVHFVLYAPDIYDVWLDKANELLE 246          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: A0A7C8YWG7_OPUST (RNA-directed RNA polymerase n=1 Tax=Opuntia streptacantha TaxID=393608 RepID=A0A7C8YWG7_OPUST)

HSP 1 Score: 176 bits (445), Expect = 9.710e-47
Identity = 89/147 (60.54%), Postives = 106/147 (72.11%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASE 779
            +MLGGGGVDGAIHRAAG EL EAC  V  V    G+RCPTGEARITPGFRL A +VIHTVGP+Y+G +     LR A K+SL L +ENN++ +AFPAISCG+YGYP DEAA++AI T+ EF+     I FVLF  D Y  +   A E
Sbjct:  124 RMLGGGGVDGAIHRAAGPELKEACAKVPEV--RPGVRCPTGEARITPGFRLPAAHVIHTVGPIYDGDKNPEESLRNAYKNSLRLAKENNIQYIAFPAISCGVYGYPYDEAAKVAISTVKEFANDFKEIHFVLFSDDIYNVWVEKAKE 268          
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Match: A0A2P5E0G5_PARAD (Macro domain containing protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5E0G5_PARAD)

HSP 1 Score: 174 bits (442), Expect = 1.030e-46
Identity = 85/149 (57.05%), Postives = 110/149 (73.83%), Query Frame = 3
Query:  339 QMLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRLDAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCGIYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKL 785
            +MLGGGG DGAIH+AAG +LL+ACY+V  V    G+RCPTGEARITPGFRL A +VI TVGP+Y G  T+A  LR A ++ L + +ENN++ +AFPAISCGIY YP +EAA +AI T+ EF+  I  + FV+FG+D Y  +   A+E L
Sbjct:   92 RMLGGGGADGAIHKAAGPDLLQACYSVPEV--GPGVRCPTGEARITPGFRLPASHVIFTVGPIYNGDPTAADSLRSAYRNCLKIAKENNIQYIAFPAISCGIYAYPFEEAATVAISTIKEFANDIKEVHFVMFGEDIYFVWLNKANELL 238          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6021.14552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8R1_ECTSI1.230e-7964.75Macro domain-containing protein n=2 Tax=Ectocarpus... [more]
W9S9J7_9ROSA1.040e-4856.95Macro domain-containing protein n=3 Tax=Morus nota... [more]
A0A218XS45_PUNGR2.990e-4859.33Macro domain-containing protein n=2 Tax=Punica gra... [more]
A0A6J1JJ63_CUCMA1.660e-4758.11uncharacterized protein LOC111484918 n=2 Tax=Cucur... [more]
A0A8B8PZY6_9MYRT1.870e-4759.60uncharacterized protein LOC115748117 n=1 Tax=Rhoda... [more]
A0A5C7GZP7_9ROSI3.160e-4756.29Macro domain-containing protein n=1 Tax=Acer yangb... [more]
UPI0011D2ACB05.110e-4759.33uncharacterized protein LOC115663435 n=1 Tax=Syzyg... [more]
UPI0002B4627A9.080e-4756.38uncharacterized protein LOC101210287 n=1 Tax=Cucum... [more]
A0A7C8YWG7_OPUST9.710e-4760.54RNA-directed RNA polymerase n=1 Tax=Opuntia strept... [more]
A0A2P5E0G5_PARAD1.030e-4657.05Macro domain containing protein n=2 Tax=Cannabacea... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6021contigL-elsbetiae_contig6021:2120..7871 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score274.2
Seed ortholog evalue8.5e-71
Seed eggNOG ortholog2880.D7G8R1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ADP-D-ribose binding
EggNOG OGsCOG2110@1,KOG2633@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionMacro domain
Ec32 orthologEc-22_002680.1
Exons8
Model size1666
Cds size1098
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.8096557-UTR-L-elsbetiae_contig6021:2119..21741622816656.8096557-UTR-L-elsbetiae_contig6021:2119..2174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6021 2120..2174 +
1691683717.5116231-UTR-L-elsbetiae_contig6021:2119..21741691683717.5116231-UTR-L-elsbetiae_contig6021:2119..2174Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6021 2120..2174 +
1622816656.902406-UTR-L-elsbetiae_contig6021:7358..78711622816656.902406-UTR-L-elsbetiae_contig6021:7358..7871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6021 7359..7871 +
1691683717.5972989-UTR-L-elsbetiae_contig6021:7358..78711691683717.5972989-UTR-L-elsbetiae_contig6021:7358..7871Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6021 7359..7871 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816656.8233397-CDS-L-elsbetiae_contig6021:2460..25141622816656.8233397-CDS-L-elsbetiae_contig6021:2460..2514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 2461..2514 +
1691683717.5225344-CDS-L-elsbetiae_contig6021:2460..25141691683717.5225344-CDS-L-elsbetiae_contig6021:2460..2514Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 2461..2514 +
1622816656.8361912-CDS-L-elsbetiae_contig6021:2774..28271622816656.8361912-CDS-L-elsbetiae_contig6021:2774..2827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 2775..2827 +
1691683717.5330203-CDS-L-elsbetiae_contig6021:2774..28271691683717.5330203-CDS-L-elsbetiae_contig6021:2774..2827Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 2775..2827 +
1622816656.8477855-CDS-L-elsbetiae_contig6021:3227..32851622816656.8477855-CDS-L-elsbetiae_contig6021:3227..3285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 3228..3285 +
1691683717.5433333-CDS-L-elsbetiae_contig6021:3227..32851691683717.5433333-CDS-L-elsbetiae_contig6021:3227..3285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 3228..3285 +
1622816656.858675-CDS-L-elsbetiae_contig6021:3461..35301622816656.858675-CDS-L-elsbetiae_contig6021:3461..3530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 3462..3530 +
1691683717.5538857-CDS-L-elsbetiae_contig6021:3461..35301691683717.5538857-CDS-L-elsbetiae_contig6021:3461..3530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 3462..3530 +
1622816656.8701692-CDS-L-elsbetiae_contig6021:3812..39111622816656.8701692-CDS-L-elsbetiae_contig6021:3812..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 3813..3911 +
1691683717.5643992-CDS-L-elsbetiae_contig6021:3812..39111691683717.5643992-CDS-L-elsbetiae_contig6021:3812..3911Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 3813..3911 +
1622816656.880533-CDS-L-elsbetiae_contig6021:6279..63481622816656.880533-CDS-L-elsbetiae_contig6021:6279..6348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 6280..6348 +
1691683717.574362-CDS-L-elsbetiae_contig6021:6279..63481691683717.574362-CDS-L-elsbetiae_contig6021:6279..6348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 6280..6348 +
1622816656.8908355-CDS-L-elsbetiae_contig6021:6662..73581622816656.8908355-CDS-L-elsbetiae_contig6021:6662..7358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 6663..7358 +
1691683717.5840542-CDS-L-elsbetiae_contig6021:6662..73581691683717.5840542-CDS-L-elsbetiae_contig6021:6662..7358Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6021 6663..7358 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6021.14552.1prot_L-elsbetiae_contig6021.14552.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6021 2461..7358 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6021.14552.1

>prot_L-elsbetiae_contig6021.14552.1 ID=prot_L-elsbetiae_contig6021.14552.1|Name=mRNA_L-elsbetiae_contig6021.14552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=366bp
MLGGGGVDGAIHRAAGGELLEACYAVEPVPNSRGIRCPTGEARITPGFRL
DAKYVIHTVGPVYEGTETSAPLLRGAIKSSLLLCRENNLKSVAFPAISCG
IYGYPADEAAEIAIETMLEFSEGIDLIEFVLFGKDTYAPFFATASEKLEA
VAEADGDASPDEPGSTEPEPKTKEEGEGTKGEDAQEEVAAETSPPESEAA
GAATQALEGDEKPKASEPIALAGEAAEGPGASTVEPMSQEESLGGLDGFA
EEGAKEPVSQEETPGGIEGEPMSQSDPGHTEEAEAATPAETAHAPAEDDV
LGRKRSVEQTAAGDAQCSVDQGVGVAMETDETNEGGGRAAGGQEGGEGTA
EPGTCESPSGPSEGR*
back to top

mRNA from alignment at L-elsbetiae_contig6021:2120..7871+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6021.14552.1 ID=mRNA_L-elsbetiae_contig6021.14552.1|Name=mRNA_L-elsbetiae_contig6021.14552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5752bp|location=Sequence derived from alignment at L-elsbetiae_contig6021:2120..7871+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTGATCTGACAAAGTGGAAGGGTGATGCTATCGTCAATGCTGCCAACG AGCGGGTGAGTTTCAGGTACTGCCGTCAGCTAATACTGACGAACTCAGAA AATTTAACATCCCAGTTAACTTTCCATGTTCGTGGGTGGATGATGGGATA CAACAAACCAAAGGCCAGCTCACGAGTTAACCCATCCCATACGTGTTTGT GATTTTCCCCGCGGTCTTCAGTCTTATAGTCGGGGGCAAAGGTACACACG CGTAATACTGTATAGTATCCACACCGACCGTCCTACTTTCGAGGGGAACA AATTCTCACACCCTCCGCCCTCCGCGCGTGTTCGCCCACAGATGCTGGGA GGGGGAGGAGTAGACGGAGCCATTCATCGAGCAGCAGGAGGAGAGGTACG TACGCCTACCGAGGAGTCTCTCAGATTTCCGCTCATAGAAACGCGTTGGC TTTGCTGACGACGTTTTTTACCCTTTGCTGCAAAAGCAAAAACTTTTTTT CATTTGTCTCGGGCAGTTTTTACCGCTAAATGTATGTGTGTTCAAGAGCT TCCTCAGCGTGGTCAATACTTTATTATTCCACCAGAGCGCACCAGGCAGG ATCAAGCCGAAGTCGCCACCTCTCACCTACCTGTCCTGTTTTGTTTCCGT GGCAGCTCTTGGAGGCATGCTATGCAGTCGAGCCGGTTCCCAATTCACGC GGAATCAGGTGAGGCAGAAAACATATTTCCTTCACCTTTCCACGTGGTCG ATCCCTGGTGCCGTTCGTTCATGACGAGGGCAGGATTTGTGCACCGTGCG TCTGGCCCATTGTGCGTCTGGAGCGAAATCTTATCCTTGTGGCTTGAACC TCTTTGGTTATATCAAAGGTATATTGGTGTCTAAAAGAGAGCCGGCGGTT GTGTGGTGTATAGACCACCATAATTTCTGTGTGTGCACTAACTACACCAA GCGTTCTATACTTTTGCTATCCGAACCTGTCAAGACGTTTAGTTTTTTAT CTGCACGACCATCACACATGCGCTTTTTGCGCTCTATCTTTCATGATATG GTACGGTGCTTTTATGTGTTTATGAACGCTTTCCCCGACAACCCTGTCCG TATCGAAGGTGCCCGACTGGAGAAGCTCGCATCACTCCTGGGTTCCGCCT CGACGCCAAGTATGTGGTGAGGTTCCATGTTGGTGCGTGCGAGATTGAAG CGGTCACCAAGAAATCTTCGGCACGTTTAGCCCCATCCATGGAGCAGAAC CATGTTGCGCATGCACGGGTGTTTCGGTCACCCCTGTCTCGCCCCTCGCG TTGTCGTGTGTTGCACATACCTATTGGCGCTCTTGAGGGCAGATCCATAC GGTCGGTCCAGTCTACGAAGGCACAGAAACTTCAGCGCCGCTCCTGCGAG GCGCCATCAAGGTGAGACCAACGCTAAAGGACTCATCGCAACCTCCTTGC CCCCGCCCCCCCCGCCCCCCCCCGCGCGACCTGAACACCGTGTCGATGAT GTAGAGCACACCCAGCAAAATAGAGTACATTGGACCCTTTGAAATACCAA CGAATTAAAAGTGACGACGAGATATTGTAGCAATCGCCTCTTGTTTCGTC TGAGAGAGACAAAATCATGTGCGAAGCTGCTCTGACACGCTGTTGCTGAC TGCCCGTCATGTTCGTCGGCTCTGCCTCGTGCCTCGCGAACAGAGCTCCC TGCTGCTCTGCAGGGAGAATAACCTGAAAAGCGTCGCTTTCCCAGCTATA TCCTGCGGCATCTACGGATACCCCGCGGACGAGGCAGCCGAGGTAGGCTG ACTGATGCGCCTTTGTCGACCGCCATGAAGTAGCTGCGACTTGCTCACGC GTAGCCGTGCTTTTGAGAGAAGCTTGGCGCGCATGCACTCGTATGCGCAC GAATAGCTCTCACTATAGGCAACCTGTCATTTTTTAGTATGCACGCGCAC CGACCGGACGTTTTTGTACAGCATGGAGGCTTGGTTCTCAATCACCACCG CGTAGAGATTGTCCGCCTCTTGTGTATCTAGCACAGAAGGTAAATCTGCT TGTTCGATTGGACCTCGTGTTGAAATAATGGGTGTACCCACAGGTAAGGG CTGGTCTTAAGGGGAAGGTGAGGGAGTCCACGGACTGGACTCTGGATCCA GGGGCTTAGTGACAAGGACGATTTGATTGATTTTTTTACATTTTGAACGT ACATTTTTTGGGGTATGCGAAAACTGACAGCACGGGCCCTCCCAAAAGCA CCACATTCCAGTTCGGCTCGTAGCGCCCCGCCGCAAGACCCCTCGACTCA CTCCAACGCAGCAGTGCTTTTCTCTTTTCTCTACAAAGAGAGACGGCCCG CGCCTAAATTTGTAGCTGTCTTGGAGGCGGATATTTTGCTCTCCAAAGGT GCAAAAATCATTGTCTGCAAAGGACTACCACAAACATCTCCAACTGGCAG TGTGGTGTTCAAGAGATCAGATAGCTCGCCCCTCACAGGCAAGAACAGCG GAAGGTGCTAGACGATCTACTGATACCGTGTGTAGGGGCCGCCGTATGTT CTGCGTAGTAGCAGCAGAAAGATAAAAGCCACGCTTTCGATGTTCTGGTG CGCACGAGCGATGTTTTCAACTTCTATTTATTTCGGTCGATCGGGTGAAT ATTTGGGTCCGTTACTTTATTTTTATTTTTACCCCCTGTTGGTGGGCGGT ATAATCGGGGGGAGGACTATGTAGACCTGTGCGGGCCTGGCTGGCGAGAA CCCGGCGCGGAACCCCCCGGCTTTGTTGAGGTACCAAGATAGTGTTGTTG GCTGTTCCAGTTTTGTTTTTACCTCACATAACATGTAGAGGGGAGCGGAG GGCTCCAGATTCGATATCTGTTTTGTTGTTGCTTTGCTGGCCCTTCGGGT CCATTTTATTTTTCGTGTACCTTTTCTTGGATGTAAGTTAGCCTGTGACC ACGGGAATGGACCGCATCAAGTGTTGGATTAGTGCAGACATTGAGAGGTA CTGGATGGAGAGATCGGAACGGTTTTTAATGTGAAGACAACATACATACG CCCCGGAGCCCCACGCTGTGGTTTTTTGCCTTGGTCAAGAAACGGACTCG ACGCGAATGTAGCTCGGCTGTTTTGAAAAGGTGTTGGATAGAGGAGGGGG TGCACAGCAATTTTTCACGGGCCTCAAAGTTACACACCCGCAAGGGGTGG GCGGGTTAAAAACTCTCCGTAAACACAGCAAAAAAGAGCCGACAATCTCG GAATACCTCTGTTATTTCACAGAACTGTCAGAAGATGCGGGCGTTTAGGG AAAGCCCATACAAACTCCAAGCGAAACTCCGTGATGTTCAGCGGGGGTAT GCGATTATTCTTCGAGAAAGGCCTATACTGATCAATGGGTACCCCTCATC GCCGCCTGACCGCAGAAATCGAATTCGAAATAGGGATTGACTAGGAATTC GGGCCGACTGGACCTGATGTGTCTCATCGGTACATATGTCGCAAAATCAA AATGGAAAATCAAACTTGTAATCGCGGAGAAATAACCAGATTGGAAGAAA CGTACATAGGACCAAGACAAATGAGAGAGACGCAACGGGCATTGTCGCGT AAACCAGAGACTTTTGGGATGCTCATGGTCCAAATCGCAGTCCCAGGGGT GCGCTGAAGCGCAAGTTTTGAATTGCAACGGCCGTATTGTTTTGTACTTG CACAATTTTTGGAATCGAGTTTTTTTATGGGAGATTCACTGCGAATCCCT TCCGAAAGTCCGAGCTGTATGGCATTCCCCCCAACGACAGCAGATGTTCC TTGCCTCTTTTGGGACTAGAAGGGTGATTTCGATTTCGATTTCGATTTTC GGTTTCGATTCCTGCGTCAAGACCGGCTCTAACCATCGGTGCGTTCACCT GAGAGCCTAGATTCCCTTGAATGCCCAACACGCCAACCCGATTGCGTTGA TTTTTGTTCATGCCGTAGAATGACGCAATACATGCATTGCTGTGAATGTA TCTCCCCTTTTCGATCACGCACTCCGGTGCCTTTGATACTCCCATATCGT GATCACCGCTTTTTGTACATACAGAAGTCTTACATATCTTCGACGTTCGG CGACGACGCCAACATGGGTGTGTGTGCCTGTGTGTTGACAACGATTGCTT GCATTGGCAGATCGCGATCGAAACCATGCTGGAATTCAGCGAAGGTATCG ACCTCATCGAATTTGTACTATTCGGAAAGGTGAGAATTAGAGCGTTAGTC GATATGTACATACGTCGCTTAAGATGATCACTGGGATGATAATACGCGAA TACGCCAATGGTTACGTTCCAACGGCTGACACCGCCTCTGCCGCCTGGAT TTATATTCACGCTTGAGCATGTGAATCGAAGCAACCGATTCGCGACGTGC CTAAATGGCAGACGTTACCTAAGGCCTTGGCTCTCTGAATTGTTCCGTGC TGACAACGCGGGAAAGCCAAACCTGTCTTGAAAACATGGGTCGAGTATTG ACTAAACAATATTGTTTCTTCGCACACTCTTGTGATTTTGCAGGACACCT ACGCCCCTTTCTTTGCCACAGCTTCCGAGAAGCTTGAGGCCGTAGCGGAG GCCGACGGCGACGCGTCGCCAGATGAGCCCGGCAGCACCGAGCCAGAGCC CAAGACGAAGGAGGAGGGCGAGGGGACGAAGGGCGAAGACGCCCAAGAAG AGGTCGCCGCCGAAACCTCCCCGCCCGAGAGCGAAGCCGCCGGTGCTGCT ACTCAAGCGCTTGAAGGAGACGAAAAGCCGAAGGCGTCCGAACCCATCGC ACTGGCGGGGGAAGCCGCGGAAGGACCCGGCGCTTCTACGGTAGAGCCCA TGTCACAAGAGGAGAGCTTGGGTGGGCTCGACGGGTTTGCTGAAGAAGGC GCCAAGGAGCCCGTGTCGCAAGAGGAGACTCCGGGAGGGATCGAGGGCGA GCCAATGTCGCAGTCAGACCCCGGGCACACCGAAGAGGCCGAAGCCGCCA CACCCGCGGAGACGGCACACGCGCCTGCCGAGGATGACGTGCTGGGCCGA AAGCGATCGGTGGAGCAGACCGCAGCGGGTGACGCGCAATGCAGCGTCGA CCAGGGTGTTGGCGTCGCGATGGAGACAGACGAAACCAACGAAGGCGGAG GGCGGGCAGCAGGAGGACAGGAGGGGGGCGAGGGAACTGCCGAGCCCGGC ACGTGTGAATCGCCGTCTGGTCCAAGCGAGGGGCGATGAACGGAGAATTC TCGGAGAAGTCCACGTGTCGCAGGAATGCCGACCACGGTATATACAAGCC TTCCGTTTCGTGCACAGGGAATGTAAACGGCGATGTCACCGAGGGGGAGT CGGAGTAGAATTGCTGCTTCAACAGTATGTAGGTGAAGAGGCTCCGTAGC CACTACTGCCGTGGAGGCAGGCAGGGCGAAACCTCCCGTCGATTTCGTTT GTGTTTTTACTTCCCAGAATGAGTTTCAAGGTGCGCAACATTGCAGCTCT TTCAACGGCCCTTTTCGCCGGTGCGCTTTTTTTGTGACACGCATTTAGTG GGCAGAGCTACACAAATATTCAATGACAAACAGCTGGCTTGAGAAGAGGA ATGGATACGCCGCAGTTGTTTTTTACCAATCAGCTACACTGCGTGCCACA AATCCCTTTTTCACAGTAGTGTCCTGCTGGCACCTACCGCACTAGAGGCA GGCAATTATGTGGATTTTGCTTTTACACAGGGGGCGGTTGCTAATTGGGA AG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6021:2120..7871+

>mRNA_L-elsbetiae_contig6021.14552.1 ID=mRNA_L-elsbetiae_contig6021.14552.1|Name=mRNA_L-elsbetiae_contig6021.14552.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2196bp|location=Sequence derived from alignment at L-elsbetiae_contig6021:2120..7871+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGGAGGGGGAGGAGTAGACGGAGCCATTCATCGAGCAGCAGGAGG
AGAGATGCTGGGAGGGGGAGGAGTAGACGGAGCCATTCATCGAGCAGCAG
GAGGAGAGCTCTTGGAGGCATGCTATGCAGTCGAGCCGGTTCCCAATTCA
CGCGGAATCAGCTCTTGGAGGCATGCTATGCAGTCGAGCCGGTTCCCAAT
TCACGCGGAATCAGGTGCCCGACTGGAGAAGCTCGCATCACTCCTGGGTT
CCGCCTCGACGCCAAGTATGTGGTGCCCGACTGGAGAAGCTCGCATCACT
CCTGGGTTCCGCCTCGACGCCAAGTATGTGATCCATACGGTCGGTCCAGT
CTACGAAGGCACAGAAACTTCAGCGCCGCTCCTGCGAGGCGCCATCAAGA
TCCATACGGTCGGTCCAGTCTACGAAGGCACAGAAACTTCAGCGCCGCTC
CTGCGAGGCGCCATCAAGAGCTCCCTGCTGCTCTGCAGGGAGAATAACCT
GAAAAGCGTCGCTTTCCCAGCTATATCCTGCGGCATCTACGGATACCCCG
CGGACGAGGCAGCCGAGAGCTCCCTGCTGCTCTGCAGGGAGAATAACCTG
AAAAGCGTCGCTTTCCCAGCTATATCCTGCGGCATCTACGGATACCCCGC
GGACGAGGCAGCCGAGATCGCGATCGAAACCATGCTGGAATTCAGCGAAG
GTATCGACCTCATCGAATTTGTACTATTCGGAAAGATCGCGATCGAAACC
ATGCTGGAATTCAGCGAAGGTATCGACCTCATCGAATTTGTACTATTCGG
AAAGGACACCTACGCCCCTTTCTTTGCCACAGCTTCCGAGAAGCTTGAGG
CCGTAGCGGAGGCCGACGGCGACGCGTCGCCAGATGAGCCCGGCAGCACC
GAGCCAGAGCCCAAGACGAAGGAGGAGGGCGAGGGGACGAAGGGCGAAGA
CGCCCAAGAAGAGGTCGCCGCCGAAACCTCCCCGCCCGAGAGCGAAGCCG
CCGGTGCTGCTACTCAAGCGCTTGAAGGAGACGAAAAGCCGAAGGCGTCC
GAACCCATCGCACTGGCGGGGGAAGCCGCGGAAGGACCCGGCGCTTCTAC
GGTAGAGCCCATGTCACAAGAGGAGAGCTTGGGTGGGCTCGACGGGTTTG
CTGAAGAAGGCGCCAAGGAGCCCGTGTCGCAAGAGGAGACTCCGGGAGGG
ATCGAGGGCGAGCCAATGTCGCAGTCAGACCCCGGGCACACCGAAGAGGC
CGAAGCCGCCACACCCGCGGAGACGGCACACGCGCCTGCCGAGGATGACG
TGCTGGGCCGAAAGCGATCGGTGGAGCAGACCGCAGCGGGTGACGCGCAA
TGCAGCGTCGACCAGGGTGTTGGCGTCGCGATGGAGACAGACGAAACCAA
CGAAGGCGGAGGGCGGGCAGCAGGAGGACAGGAGGGGGGCGAGGGAACTG
CCGAGCCCGGCACGTGTGAATCGCCGTCTGGTCCAAGCGAGGGGCGATGA
GACACCTACGCCCCTTTCTTTGCCACAGCTTCCGAGAAGCTTGAGGCCGT
AGCGGAGGCCGACGGCGACGCGTCGCCAGATGAGCCCGGCAGCACCGAGC
CAGAGCCCAAGACGAAGGAGGAGGGCGAGGGGACGAAGGGCGAAGACGCC
CAAGAAGAGGTCGCCGCCGAAACCTCCCCGCCCGAGAGCGAAGCCGCCGG
TGCTGCTACTCAAGCGCTTGAAGGAGACGAAAAGCCGAAGGCGTCCGAAC
CCATCGCACTGGCGGGGGAAGCCGCGGAAGGACCCGGCGCTTCTACGGTA
GAGCCCATGTCACAAGAGGAGAGCTTGGGTGGGCTCGACGGGTTTGCTGA
AGAAGGCGCCAAGGAGCCCGTGTCGCAAGAGGAGACTCCGGGAGGGATCG
AGGGCGAGCCAATGTCGCAGTCAGACCCCGGGCACACCGAAGAGGCCGAA
GCCGCCACACCCGCGGAGACGGCACACGCGCCTGCCGAGGATGACGTGCT
GGGCCGAAAGCGATCGGTGGAGCAGACCGCAGCGGGTGACGCGCAATGCA
GCGTCGACCAGGGTGTTGGCGTCGCGATGGAGACAGACGAAACCAACGAA
GGCGGAGGGCGGGCAGCAGGAGGACAGGAGGGGGGCGAGGGAACTGCCGA
GCCCGGCACGTGTGAATCGCCGTCTGGTCCAAGCGAGGGGCGATGA
back to top