mRNA_L-elsbetiae_contig6013.14543.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6013.14543.1
Unique NamemRNA_L-elsbetiae_contig6013.14543.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6013.14543.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6013contigL-elsbetiae_contig6013:5806..8449 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size615
Cds size615
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.7361822-CDS-L-elsbetiae_contig6013:5805..63461622816655.7361822-CDS-L-elsbetiae_contig6013:5805..6346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 5806..6346 +
1691683716.670088-CDS-L-elsbetiae_contig6013:5805..63461691683716.670088-CDS-L-elsbetiae_contig6013:5805..6346Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 5806..6346 +
1622816655.74806-CDS-L-elsbetiae_contig6013:8375..84491622816655.74806-CDS-L-elsbetiae_contig6013:8375..8449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 8376..8449 +
1691683716.6841698-CDS-L-elsbetiae_contig6013:8375..84491691683716.6841698-CDS-L-elsbetiae_contig6013:8375..8449Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6013 8376..8449 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6013.14543.1prot_L-elsbetiae_contig6013.14543.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6013 5806..8449 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6013.14543.1

>prot_L-elsbetiae_contig6013.14543.1 ID=prot_L-elsbetiae_contig6013.14543.1|Name=mRNA_L-elsbetiae_contig6013.14543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=205bp
PRFVLGTCQLSHVGLHGTDNRDPMLPCPKRRPRRRDRLDVPEREAHEAHA
SMRRGGRGAGLGLLLLPVQYTAALRPCARPAIPSAEAYRSFPSGKGSREC
HGSSSSGSGSSSSRRCGDVALGAAEHVGQAAMFPAQQAGDRRDASPASSG
STLGNEDECRSNGGEEGAVDLRDRHRNHHPGPVDLNGGAAPLNGHHTVAV
AAAAA
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mRNA from alignment at L-elsbetiae_contig6013:5806..8449+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6013.14543.1 ID=mRNA_L-elsbetiae_contig6013.14543.1|Name=mRNA_L-elsbetiae_contig6013.14543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2644bp|location=Sequence derived from alignment at L-elsbetiae_contig6013:5806..8449+ (Laminarionema elsbetiae ELsaHSoW15)
CCACGATTCGTCCTCGGCACCTGCCAGTTGTCACACGTAGGGCTCCACGG
TACCGATAACCGTGACCCTATGCTCCCATGCCCCAAACGGCGTCCCAGGC
GGCGTGATCGCCTGGATGTCCCCGAACGTGAAGCACATGAAGCACACGCC
TCCATGCGGCGAGGTGGGCGAGGTGCAGGCCTGGGGCTCCTGCTCCTCCC
GGTGCAGTACACCGCTGCCCTCCGGCCGTGCGCGCGGCCGGCGATCCCAT
CAGCGGAGGCCTATCGGTCCTTCCCAAGTGGCAAAGGATCCCGGGAGTGT
CACGGGAGCAGCAGCAGCGGCAGCGGCAGCAGCAGTAGCCGGAGGTGCGG
CGATGTTGCACTAGGTGCCGCAGAGCATGTGGGGCAAGCGGCCATGTTTC
CGGCTCAGCAGGCAGGCGACAGGAGGGACGCTTCGCCCGCCTCGAGTGGG
TCTACACTGGGCAATGAAGACGAGTGCCGTAGCAATGGTGGCGAGGAGGG
AGCAGTTGACCTGCGGGACCGTCATCGCAACCATCACCCAGGTTAGACAG
CCTCTTTTTGACAGCGGTACATAAATGCCCTTTCAGGCCGTGGGTGCAGT
GTTCAACTTGGGGCTACCGATGCACACAAGGAGGTCTTGGTTGCTTCGTA
GCACGCTCCTCAAATGTGCAGGGGCTCAAATTCCTTCGCCCCAGCACCGC
GTTTCTGCCCTGTAGGAGCTCGCTTGCGTTGGACTCGCTTGCCATGTACG
AAGCGATTTGAACACATGTAGTCTACAAAAAATGCACGGTCATGTATCTA
GAGTAGCGTTCGGTGTACATGAACGCATCTGCGAACCTCGCTAAAACCAA
CGCAGCCAGGTGGAGGTACGTTCGGTCACCACCCACCTGATTCGAAACCA
GAATCGAATGGATGCGCCATAAGCATGGTTTACCTGCGCACATGGTGCCG
AGTGCTGAGATTACCCCCAGGTTGCTTATCGGTCACTAAAACATACTTCT
ACTACATACACAGGTCAGACCACAGGCGGCCCACTAAGAACCGCTTGTTT
TGAGTAACCCTCGAGGCTTACTGGCTGCCGGAACCCAAGCACTTGTTCCT
ATTCTCCAAGTTCTTGTTTCGAGCAGGCACTCGTGGCCAAAAAACGCGGT
TCTTGTTGCTATTCTCGGGGCAAAGGCATGATTATCCATCCCCCTTCCGT
ACAGACAGAGCCTCGGTCGGGCAGGTAAGATACCTACCGAACGAGGGGGG
AAGATACACGTGTGGCAATATTTTTTGAGGCACCTACCTCCCCCCCCCAC
CGGTTCGATATTTTTAACCGTCACCCAGGCCCTCCTGTGGACCCAACCCT
CTTTGGGGGGTGACCCTACGATCCACCCGAGTTATTTATCTTCCAGCCAC
ACCGCCGTGTTGTTGGCCCCGTTCCTATCTCGAGCTGGAGTTTTCACCGC
TTCTGTTGGTTCTTGTTCTTAGTGGCACCTCCGAACCGAGCACATGCTCT
TATGGCCATGCTTTCATTTGTTTACACAATTCAAACCCTGAAGTTCTTAA
CTGCCAAGTTCTTAACTGCGGGCTGCATCTGTATGCACAGCAGCAGCTGT
TGTTGTTGTTTCTTCACATTAAAAACCGTTCCGATCTCTCCACTCAGTAC
CTCCCTATAGGGCATACTATTCCAACACTTGATGCGGTCAATTCCCGTTG
TCACAGGCTAACTTACACCGAAAAAAAGATACACGAAAATTAAATTGGAT
CTGAAGGGTAAGCACAACGATAAACATCAAAGACAAATAGTGTGGAGCCC
CCCACTCCCCTCTACACGCTATGCGGTATGTAGCGATGCAATTTGGCGGG
CTGTCGGTATAAATATGAATAGGCCAAATGCTCGTTTCAGCCGCACTTGC
AACTCCCCCCCGCCGTCGATCCCGCGAGCTTTGCACGCCTCAGAGCAGCA
CGAACCGTTGCAGGCGATACGGTCGTGTACAGCAAACTCGCCTGTGTTGT
TGTATGTATGTAAGAGGAATGACCCACTTTTCACCATCTGAGAAACGCGC
CGCTTTTTCATTGTTGTTGTTGTTGTTGTCTTCACATTAAAAACCGTTCC
GATCTCTCTGTCCAGTACACCTCCATGAGTTCCTACTAATCCAACACTGG
CGCGGTTAATCCCCATGGTCACAGGATAACTTACCCCGAACAAAAGGGTA
TATAGACTACTAAAAAAATGAAAATAACTCAAATGGACCGGAAGGGTCCA
CAAAGCACAAAAACGAAACATCAGACACAGATAGTTTGGAGCCCTCCGCT
CCCCTCTTCACGCTTTGTGAGGTGAAAAACAAAAGTGGACACGGCCATCA
TCACCAACCGTGGGGGGAAACGCCCCGTGGTTCTATCTTGGTATTCTACA
CTCCGAATACCCGCGGCCTGCTGCCTGCACCCGCCCCCCCCCCGGGTCCT
GTGAAACCGCGCACCCCCCCCAGTAAATCGTGCACGCGCTTCCGTTGCTG
TTTTTCCCTCTGGGTTACATGGAACCCCCCCCGCTAAAATTTAACCGCTT
TCTGGCTACTTGTGCTCCAGGCCCGGTAGACCTAAACGGCGGCGCTGCAC
CTCTCAACGGCCACCACACGGTCGCGGTGGCGGCGGCGGCGGCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6013:5806..8449+

>mRNA_L-elsbetiae_contig6013.14543.1 ID=mRNA_L-elsbetiae_contig6013.14543.1|Name=mRNA_L-elsbetiae_contig6013.14543.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1230bp|location=Sequence derived from alignment at L-elsbetiae_contig6013:5806..8449+ (Laminarionema elsbetiae ELsaHSoW15)
CCACGATTCGTCCTCGGCACCTGCCAGTTGTCACACGTAGGGCTCCACGG
TACCGATAACCGTGACCCTATGCTCCCATGCCCCAAACGGCGTCCCAGGC
GGCGTGATCGCCTGGATGTCCCCGAACGTGAAGCACATGAAGCACACGCC
TCCATGCGGCGAGGTGGGCGAGGTGCAGGCCTGGGGCTCCTGCTCCTCCC
GGTGCAGTACACCGCTGCCCTCCGGCCGTGCGCGCGGCCGGCGATCCCAT
CAGCGGAGGCCTATCGGTCCTTCCCAAGTGGCAAAGGATCCCGGGAGTGT
CACGGGAGCAGCAGCAGCGGCAGCGGCAGCAGCAGTAGCCGGAGGTGCGG
CGATGTTGCACTAGGTGCCGCAGAGCATGTGGGGCAAGCGGCCATGTTTC
CGGCTCAGCAGGCAGGCGACAGGAGGGACGCTTCGCCCGCCTCGAGTGGG
TCTACACTGGGCAATGAAGACGAGTGCCGTAGCAATGGTGGCGAGGAGGG
AGCAGTTGACCTGCGGGACCGTCATCGCAACCATCACCCAGCCACGATTC
GTCCTCGGCACCTGCCAGTTGTCACACGTAGGGCTCCACGGTACCGATAA
CCGTGACCCTATGCTCCCATGCCCCAAACGGCGTCCCAGGCGGCGTGATC
GCCTGGATGTCCCCGAACGTGAAGCACATGAAGCACACGCCTCCATGCGG
CGAGGTGGGCGAGGTGCAGGCCTGGGGCTCCTGCTCCTCCCGGTGCAGTA
CACCGCTGCCCTCCGGCCGTGCGCGCGGCCGGCGATCCCATCAGCGGAGG
CCTATCGGTCCTTCCCAAGTGGCAAAGGATCCCGGGAGTGTCACGGGAGC
AGCAGCAGCGGCAGCGGCAGCAGCAGTAGCCGGAGGTGCGGCGATGTTGC
ACTAGGTGCCGCAGAGCATGTGGGGCAAGCGGCCATGTTTCCGGCTCAGC
AGGCAGGCGACAGGAGGGACGCTTCGCCCGCCTCGAGTGGGTCTACACTG
GGCAATGAAGACGAGTGCCGTAGCAATGGTGGCGAGGAGGGAGCAGTTGA
CCTGCGGGACCGTCATCGCAACCATCACCCAGGCCCGGTAGACCTAAACG
GCGGCGCTGCACCTCTCAACGGCCACCACACGGTCGCGGTGGCGGCGGCG
GCGGCGGCCCGGTAGACCTAAACGGCGGCGCTGCACCTCTCAACGGCCAC
CACACGGTCGCGGTGGCGGCGGCGGCGGCG
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