mRNA_L-elsbetiae_contig6012.14542.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6012.14542.1
Unique NamemRNA_L-elsbetiae_contig6012.14542.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6012.14542.1 vs. uniprot
Match: D7FSS4_ECTSI (Poly(A)-binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSS4_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 1.710e-43
Identity = 83/98 (84.69%), Postives = 89/98 (90.82%), Query Frame = 2 
Query:  134 MTHLHHHPAPS--VVDDEGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDNSRTFDIRLGGEARVPVSRELILALAAKKKQLLALCESTLRTPRSI 421
            M+    HPAP+  VVDD GEAFARAVFCRFLRQATISRDIDDVIEHMHIVND+S+TF IRLGG+ARVPVSRELILALAAKKK+LLALCES LRTPRSI
Sbjct:    1 MSQYQQHPAPASGVVDDAGEAFARAVFCRFLRQATISRDIDDVIEHMHIVNDDSQTFAIRLGGDARVPVSRELILALAAKKKELLALCESKLRTPRSI 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6012.14542.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSS4_ECTSI1.710e-4384.69Poly(A)-binding protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6012contigL-elsbetiae_contig6012:7246..10724 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size774
Cds size702
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6012.14542.1prot_L-elsbetiae_contig6012.14542.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6012 7318..10724 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.613233-UTR-L-elsbetiae_contig6012:7245..73171622816655.613233-UTR-L-elsbetiae_contig6012:7245..7317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6012 7246..7317 -
1691683716.5664747-UTR-L-elsbetiae_contig6012:7245..73171691683716.5664747-UTR-L-elsbetiae_contig6012:7245..7317Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6012 7246..7317 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816655.6241887-CDS-L-elsbetiae_contig6012:7317..76051622816655.6241887-CDS-L-elsbetiae_contig6012:7317..7605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6012 7318..7605 -
1691683716.5774612-CDS-L-elsbetiae_contig6012:7317..76051691683716.5774612-CDS-L-elsbetiae_contig6012:7317..7605Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6012 7318..7605 -
1622816655.6340463-CDS-L-elsbetiae_contig6012:8843..89951622816655.6340463-CDS-L-elsbetiae_contig6012:8843..8995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6012 8844..8995 -
1691683716.587078-CDS-L-elsbetiae_contig6012:8843..89951691683716.587078-CDS-L-elsbetiae_contig6012:8843..8995Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6012 8844..8995 -
1622816655.6437857-CDS-L-elsbetiae_contig6012:10462..107241622816655.6437857-CDS-L-elsbetiae_contig6012:10462..10724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6012 10463..10724 -
1691683716.6064768-CDS-L-elsbetiae_contig6012:10462..107241691683716.6064768-CDS-L-elsbetiae_contig6012:10462..10724Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6012 10463..10724 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6012.14542.1

>prot_L-elsbetiae_contig6012.14542.1 ID=prot_L-elsbetiae_contig6012.14542.1|Name=mRNA_L-elsbetiae_contig6012.14542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=234bp
GASWQREHRETERYNERERPSPPTFTTIYPGWSVIGVFGKGLEKDDPSPP
PSGAERGGRRRGSLRASRFLPFSPPGYHLERHRRRHRAHAHRQRQLENLR
HPAGRRGASAGEPGADLGAGGQEEAALGALRVHAEDAQVDNEPKHRRCRR
SRGRRRWWWQRRWRGRRLQRWRGWSRPLLIPAALPTAGRRSRQPKSDPGG
ASGGGFPTGSGPGRDAVAGGGGRLGDSACRQGR*
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mRNA from alignment at L-elsbetiae_contig6012:7246..10724-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6012.14542.1 ID=mRNA_L-elsbetiae_contig6012.14542.1|Name=mRNA_L-elsbetiae_contig6012.14542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3479bp|location=Sequence derived from alignment at L-elsbetiae_contig6012:7246..10724- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGTCCTGGCAGAGAGAGCACCGCGAAACAGAGAGATACAACGAACG
CGAGAGACCGAGCCCACCTACTTTTACTACAATCTACCCAGGCTGGTCGG
TGATCGGCGTGTTTGGGAAGGGATTGGAAAAAGATGACCCATCTCCACCA
CCATCCGGCGCCGAGCGTGGTGGACGACGAAGGGGAAGCCTTCGCGCGAG
CCGTTTTCTGCCGTTTTCTCCGCCAGGCTACCATCTCGAGAGACATCGAC
GACGTCATCGAGGTGAGCTGTGTTGGGAGGCGTCGCTGACTACTACTGTC
GATGTAGCTCAGTCGATAATTGTGAACCGTATGTACGTAACACCTTTTAA
CAAAAGTTCAGCGCCTGGTTAGAGGGATCACAGCCCTCGGGTTTAATCAG
GCTTTCCGGAATGTAACCGTAACAAGCTGAAGCTGAAAACTATCCCCTGG
CCGCACGATTTGCCGAGAGTGATCCACCGACAGCAGGAACGCGTTGGTTG
TCGTTGTTGTTGTTGTCGTTGCCCCTATTGAAAACCTTTCCGATCTCTCC
ATCCAGTACCTCCATGAGTCCGTACTAATCCAACACTGACGCGATCGACT
CCCGTGGTCACAGGATCTGCTTTGATCTTGAGAGCGCTGGACGCGTGTGA
GTCCGTCCGACAACCGCCGTTCGATCCCGGCCGAGGCCGGCAGCCCCTGC
ACGCCCGAAAGCAAGGTCCAACTCAGAGAGAGGCGTGGTGAAGGACCAGA
CCCCCATGGTTTCTCGTTCGGCTAGCCAGTCCAGCTCTCGGTGCATCATG
CCTGCTGTGCACAATGTTTTTTGTTTTTCGCCCATCATTGGCATATTTGT
CGTCTGCTCCACTGGCCCCCTTCCTCCACTACGCCTAGACGACCCCAACC
GGGGTCAGACAGGAGGGGGGGTTGGACCCCCCTCCTGCGGTGCCTGTCTT
GGACGTTTTTATCGCGAGCAGGGTTCAGCACTCCCCGCCCTCGTCAGCAA
TTAAGTCGAAGTAGTATTTACTATCGAAATCGCTTTCAATTTTCCAGGAA
CGAATGTGAGAAAAAAACTCGCTTCGCAGGGGCTGGAACCCAGGGCCTGA
TTCTTAGAAGGTTGCGGGGATACCAAATAGACCACCGGGGCGAAACGGCA
CCGTATGTCCCTGTCTCTCTCTTTCTCGTTCGCGACAACGACGACGACGA
TTGACGGCGACGGCTGCTTAGCTCAGGTTTTGATCGGATCTCAACAGGTT
CGACCGCCGCGCCCGCCCCATTTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGCGCCGAACCCCCGAACAGAAACCAACCACGAGAGAACCGAAG
CCCACGCAAACGTGGAGACACACACTCCTACTGTACCCTCTGAATTAGTT
TTTGGTGTGCCGGCAAGACGTAAGACCCCTCCGGGGAACAGCTTAGTCTC
GCCGGGCGCGTATGTATGTACGTATGTAACCATATACTCTTGTTTCGTAT
TTTTTCTTCCGCGGCGTTGAGCGTGCCCTGTTCTTGTGACCACGGGCAGG
CAGCCCCCTCCCCCCCCGCCCCGTGAATGGTTTCGGACTAAATAAATACA
TAACTATCTAGAGAGCTAATTTAATGCAAGAGAAACCAACAACACTTCCA
CCTTTTTTTCCAACTACTATGCTGTGTATCTGCGGTGGACAAACGAAAAC
GCATCCGCCCACCGCCCGCCGGCCAGCAGCACATGCACATCGTCAACGAC
AACTCGAGAACCTTCGACATCCGGCTGGGCGGCGAGGCGCGAGTGCCGGT
GAGCCGGGAGCTGATCTTGGCGCTGGCGGCCAAGAAGAAGCAGCTCTTGG
CGCTCTGCGAGTCCACGCTGAGGACGCCCAGGTGGGAGGTCGAGCAGTAC
ATGTATGTGAAGTAAGGCCCTGACTCCGTTGGCCACTTTTTTTTCGGCTC
AAGATACACCTTCTTTTTCTCTACACTAAACTCAGTACAGTAACGAGTTT
TGTTCCTCCGCAATTCCACAAATGGCCAACGGGGTCGAGGCCTACATACG
CGGGGTTTGTCTTGAGCTACTGTCTGTTTGTAGCGTATTTCTGGGATATA
AAGTGTAGGAATCGGGAAGGGGGGGGGTCGAGGTTTGGGGTTAAATAGGT
TAGGTTAGGGTTAGTGTTACGGAGCCCCTGTCTCTTATGTTCGTCTAGAT
AAAAGTTCATTTCTTCGCTGAGGACGCTCAGGTGAGAATCGAACAGTTTG
AAGCCTGCGCAGGGTTTGCCTCCGGCTAGCGCACATACATATGGGATAAA
TAAAGTATAGGAATCGGGAAAGGGGTTTGGGGTCTGGGGCTATAGGGTGA
GGGTTAGGGTTAGGGTTGCGGAACCCCTGTCTTGATTTCCTAGATGTTTC
TTTGCGAAGGCGATCCGAGCTGAGAGCCTGGCCCCTGTGGACCAAAGGTT
GTGAGAGCGGAAGGCCGCCTAGGCGGCACAGTAGAGAGCCCCCCCTTTCG
GAACAGTTTTTGTTGTGAGCGCCGCAGCAGATGGTGCTGCTGCATTTCTT
TTAGTCCGTGTTGTGTTTATTGGAGGGGGGGCGTGACTGTCGCGGCTAAA
TATGTGGACTGGCTCTCTTGCCTTGTACGTCGAGAGGGGCGAAAAAAACA
GCTTTTACTTCTCTCCGTAAGAACCTGGCTCTCTTCCCGACTCGTCGAAG
ACTCTCAACAACTGAACCATCAATGGGCGCGTTCAACCATTTTTTGGTTT
TTGGGGTTTTGCATCAATGACATTTACGACCAACCGCGGTTATTGTTTTT
AGCTGGCAATGCCGTCCTACTACTGCACACCACGGAGGCAGGTGAGTGGT
CCACTAATACTGTGTGTGTGTCTGTGTGTGTGTGTGTGTTTTTTTTTGTT
TTTTGTTTTTTGTTTTCGTTGCCACCGCCGTATGTCTTTATTCAGCTGAC
GATAGATAGCTTTCAGAGACCTGCTCACCATCCGCATGAACACCCAACCA
GTTGACGTGTGAGGTGCTATCCACAAGAAGACCAAGCCTGCGCTTGAAAA
GTAACCGAGCCGCCGCCGCTCCGCTCCCGCGACGGGCCTGATAAATTAAC
GACGGCTCTCTCATCTCAGGTCGATAACGAGCCAAAACACCGCCGGTGCC
GCCGCTCGCGCGGCCGCCGGCGGTGGTGGTGGCAGCGGCGGTGGCGGGGG
CGGCGGCTGCAGCGGTGGCGGGGGTGGTCTAGGCCTCTCCTCATCCCTGC
AGCACTACCAACAGCAGGGCGGCGCTCCCGGCAGCCAAAGTCCGACCCCG
GCGGCGCCTCAGGCGGTGGTTTTCCCACCGGCAGCGGCCCTGGCCGCGAT
GCAGTCGCCGGGGGCGGGGGCCGGCTCGGCGACTCTGCCTGTCGGCAGGG
GCGGTGACGTGCCGGCAACAGCAGCAGCGGCGGGGGCGGGAGTGGCGGCG
GCGGCGGCGGCGGCGGCAGCAGAAGAAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6012:7246..10724-

>mRNA_L-elsbetiae_contig6012.14542.1 ID=mRNA_L-elsbetiae_contig6012.14542.1|Name=mRNA_L-elsbetiae_contig6012.14542.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig6012:7246..10724- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCGTCCTGGCAGAGAGAGCACCGCGAAACAGAGAGATACAACGAACG
CGAGAGACCGAGCCCACCTACTTTTACTACAATCTACCCAGGCTGGTCGG
TGATCGGCGTGTTTGGGAAGGGATTGGAAAAAGATGACCCATCTCCACCA
CCATCCGGCGCCGAGCGTGGTGGACGACGAAGGGGAAGCCTTCGCGCGAG
CCGTTTTCTGCCGTTTTCTCCGCCAGGCTACCATCTCGAGAGACATCGAC
GACGTCATCGAGGGTGCGTCCTGGCAGAGAGAGCACCGCGAAACAGAGAG
ATACAACGAACGCGAGAGACCGAGCCCACCTACTTTTACTACAATCTACC
CAGGCTGGTCGGTGATCGGCGTGTTTGGGAAGGGATTGGAAAAAGATGAC
CCATCTCCACCACCATCCGGCGCCGAGCGTGGTGGACGACGAAGGGGAAG
CCTTCGCGCGAGCCGTTTTCTGCCGTTTTCTCCGCCAGGCTACCATCTCG
AGAGACATCGACGACGTCATCGAGCACATGCACATCGTCAACGACAACTC
GAGAACCTTCGACATCCGGCTGGGCGGCGAGGCGCGAGTGCCGGTGAGCC
GGGAGCTGATCTTGGCGCTGGCGGCCAAGAAGAAGCAGCTCTTGGCGCTC
TGCGAGTCCACGCTGAGGACGCCCAGCACATGCACATCGTCAACGACAAC
TCGAGAACCTTCGACATCCGGCTGGGCGGCGAGGCGCGAGTGCCGGTGAG
CCGGGAGCTGATCTTGGCGCTGGCGGCCAAGAAGAAGCAGCTCTTGGCGC
TCTGCGAGTCCACGCTGAGGACGCCCAGGTCGATAACGAGCCAAAACACC
GCCGGTGCCGCCGCTCGCGCGGCCGCCGGCGGTGGTGGTGGCAGCGGCGG
TGGCGGGGGCGGCGGCTGCAGCGGTGGCGGGGGTGGTCTAGGCCTCTCCT
CATCCCTGCAGCACTACCAACAGCAGGGCGGCGCTCCCGGCAGCCAAAGT
CCGACCCCGGCGGCGCCTCAGGCGGTGGTTTTCCCACCGGCAGCGGCCCT
GGCCGCGATGCAGTCGCCGGGGGCGGGGGCCGGCTCGGCGACTCTGCCTG
TCGGCAGGGGCGGTGAGTCGATAACGAGCCAAAACACCGCCGGTGCCGCC
GCTCGCGCGGCCGCCGGCGGTGGTGGTGGCAGCGGCGGTGGCGGGGGCGG
CGGCTGCAGCGGTGGCGGGGGTGGTCTAGGCCTCTCCTCATCCCTGCAGC
ACTACCAACAGCAGGGCGGCGCTCCCGGCAGCCAAAGTCCGACCCCGGCG
GCGCCTCAGGCGGTGGTTTTCCCACCGGCAGCGGCCCTGGCCGCGATGCA
GTCGCCGGGGGCGGGGGCCGGCTCGGCGACTCTGCCTGTCGGCAGGGGCG
GTGA
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