mRNA_L-elsbetiae_contig6009.14537.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6009.14537.1
Unique NamemRNA_L-elsbetiae_contig6009.14537.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig6009.14537.1 vs. uniprot
Match: A0A6H5JTU3_9PHAE (tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTU3_9PHAE)

HSP 1 Score: 274 bits (701), Expect = 5.500e-87
Identity = 177/329 (53.80%), Postives = 203/329 (61.70%), Query Frame = 1 
Query:    1 RRPRVNFVGGRAFVYDAASAATLLSEHRIWAAPVGVRRARNKSPEHNFPCVLSQEQAALVLSRNLADVTYDSPSYSSSSDGG-HGACGGDYRRVQEQEG------ESNKGISS------------SKWKFPETPTEKKSMAVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVIVGRGSNDELSPAEVSGFARVQQAVGKRSVIATPPRATEDS--MSTPTGMGEAAAVALAS---PRIVEAGTTGVIGQAPLVAGHQGAPAT-----------------PAA---------------------PTDEGVRYITLQFHSVSYR 801
            RRP+V+ V GR  VYD ASAATLLSEHRIWA PVGVRRARNKSPEH+FPCVLS EQA LVL R LADV Y  P +SS+S+ G HG    + R   + +G      ++N  +++            SKW+FPET    KS AVFEDLWAKGLC  SGSNY AD+VVYNGPPTERHS+AAVIV RG+NDELSPAE+SGFARVQQAVGKR+VIAT P AT D+  M        +AAVA A+   PR  E   TGV G+      H+G   T                 PAA                     P +EGVRYITLQFHSVS R
Sbjct:   17 RRPQVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRRARNKSPEHSFPCVLSPEQATLVLRRRLADVFY--PRHSSASETGCHGHETLEERHSDDGDGGAEEQEDANVPMTTKKVCHDPPRSLDSKWRFPETAVGTKSTAVFEDLWAKGLCPASGSNYAADFVVYNGPPTERHSIAAVIVSRGANDELSPAELSGFARVQQAVGKRAVIATAPLATNDTSPMVVEANTLASAAVATAAVVAPRGSEGKPTGVEGRTSTPRRHEGGQETASGTVLGTASEKLPTQAPAAANAVAXXXXXXXXXXXXXXXTPANEGVRYITLQFHSVSSR 343
[Close]
BLAST of mRNA_L-elsbetiae_contig6009.14537.1 vs. uniprot
Match: D8LBR0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBR0_ECTSI)

HSP 1 Score: 65.1 bits (157), Expect = 3.330e-10
Identity = 31/38 (81.58%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:    1 RRPRVNFVGGRAFVYDAASAATLLSEHRIWAAPVGVRR 114
            RRPRV+ V GR  VYD ASAATLLSEHRIWA PVGVRR
Sbjct:   13 RRPRVHVVDGRVLVYDPASAATLLSEHRIWATPVGVRR 50
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6009.14537.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTU3_9PHAE5.500e-8753.80tRNA-intron lyase n=1 Tax=Ectocarpus sp. CCAP 1310... [more]
D8LBR0_ECTSI3.330e-1081.58Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6009contigL-elsbetiae_contig6009:5377..7590 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue3.5e-07
Seed eggNOG ortholog4792.ETI45198
Preferred nameTSEN34
KEGG rclassRC00004,RC00041
KEGG koko:K00181,ko:K15323
KEGG ReactionR11201
KEGG Pathwayko04310,map04310
Hectar predicted targeting categoryother localisation
GOsGO:0000213,GO:0000214,GO:0000379,GO:0000394,GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0004549,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0006139,GO:0006388,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016020,GO:0016070,GO:0016787,GO:0016788,GO:0016892,GO:0016894,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0098588,GO:0098805,GO:0140098,GO:0140101,GO:1901360,GO:1902494,GO:1902555,GO:1905348
EggNOG free text desc.tRNA intron endonuclease, catalytic C-terminal domain
EggNOG OGs3QI5E@4776,COG1676@1,KOG4133@2759
EC2.3.1.250,3.1.27.9
COG Functional cat.J
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03016
Ec32 ortholog descriptiontRNA endonuclease-like domain
Ec32 orthologEc-27_003060.1
Exons4
Model size1020
Cds size447
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6009.14537.1prot_L-elsbetiae_contig6009.14537.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6009 6650..7377 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.8980627-UTR-L-elsbetiae_contig6009:5376..54861622816654.8980627-UTR-L-elsbetiae_contig6009:5376..5486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 5377..5486 +
1691683716.0077505-UTR-L-elsbetiae_contig6009:5376..54861691683716.0077505-UTR-L-elsbetiae_contig6009:5376..5486Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 5377..5486 +
1622816654.9088068-UTR-L-elsbetiae_contig6009:6018..62021622816654.9088068-UTR-L-elsbetiae_contig6009:6018..6202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 6019..6202 +
1691683716.0221832-UTR-L-elsbetiae_contig6009:6018..62021691683716.0221832-UTR-L-elsbetiae_contig6009:6018..6202Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 6019..6202 +
1622816654.925284-UTR-L-elsbetiae_contig6009:6583..66491622816654.925284-UTR-L-elsbetiae_contig6009:6583..6649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 6584..6649 +
1691683716.0347686-UTR-L-elsbetiae_contig6009:6583..66491691683716.0347686-UTR-L-elsbetiae_contig6009:6583..6649Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 6584..6649 +
1622816654.9625788-UTR-L-elsbetiae_contig6009:7377..75901622816654.9625788-UTR-L-elsbetiae_contig6009:7377..7590Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 7378..7590 +
1691683716.0685396-UTR-L-elsbetiae_contig6009:7377..75901691683716.0685396-UTR-L-elsbetiae_contig6009:7377..7590Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig6009 7378..7590 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.938119-CDS-L-elsbetiae_contig6009:6649..67341622816654.938119-CDS-L-elsbetiae_contig6009:6649..6734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6009 6650..6734 +
1691683716.045843-CDS-L-elsbetiae_contig6009:6649..67341691683716.045843-CDS-L-elsbetiae_contig6009:6649..6734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6009 6650..6734 +
1622816654.9509356-CDS-L-elsbetiae_contig6009:7015..73771622816654.9509356-CDS-L-elsbetiae_contig6009:7015..7377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6009 7016..7377 +
1691683716.0598426-CDS-L-elsbetiae_contig6009:7015..73771691683716.0598426-CDS-L-elsbetiae_contig6009:7015..7377Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6009 7016..7377 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6009.14537.1

>prot_L-elsbetiae_contig6009.14537.1 ID=prot_L-elsbetiae_contig6009.14537.1|Name=mRNA_L-elsbetiae_contig6009.14537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=149bp
MAVFEDLWAKGLCAVSGSNYGADYVVYNGPPTERHSVAAVIVGRGSNDEL
SPAEVSGFARVQQAVGKRSVIATPPRATEDSMSTPTGMGEAAAVALASPR
IVEAGTTGVIGQAPLVAGHQGAPATPAAPTDEGVRYITLQFHSVSYRA*
back to top

mRNA from alignment at L-elsbetiae_contig6009:5377..7590+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6009.14537.1 ID=mRNA_L-elsbetiae_contig6009.14537.1|Name=mRNA_L-elsbetiae_contig6009.14537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2214bp|location=Sequence derived from alignment at L-elsbetiae_contig6009:5377..7590+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGCCCCCGAGTGAATTTTGTCGGCGGGCGGGCCTTCGTGTACGACGC
GGCGAGCGCGGCCACGCTTCTCTCCGAGCACCGCATATGGGCAGCCCCTG
TCGGCGTCAGGCACGTGATAGTTTTCCACGATACATGCACTCGCTTGCGA
GAAGGTTTTCCTGACAACCTTGCTAGTCACGCGGTCCGCCTTTTCGGTAG
CAGGCATGTTGAGTCCTCAACAAGTGTTTCATGCACGCCGTGCAGCTTCC
TCCGGTTAATCATCTGATTGAACCCCGCAGCCGCATTTCATGCTGGAAAG
CAAAACGTTGTGAACGTTCAGCGCACCACCTCGGCGCCCTGCAAGTCTTC
GTTCAATGCAAGTTTTTTCTCGGAGAGCCAATATATGAGCGCTCAGAGGC
CAACATTGTTTTCTTTCGTCTGAAGAGCCGGCCGCCTTAATCTTCCTCTC
TGCACTACGGCAGCGGGCGTTACATTTGCCATTACCTTGGGCTCGCTTCC
AGTGGGACGGGGCCCGCGCAGCGCCCGAAACCTTGTATACTACTCGTACT
TGGTGCGCTGTTTACTGACAGCTTGCTTGCCTCCCCTTTCTTTCGCCCCT
CCCCACTGCGTCCTGCTCACACATCTGGGCCGAATCGAGCAGGCGCGCCC
GCAACAAGTCTCCCGAGCATAATTTTCCCTGTGTGCTGTCGCAAGAGCAA
GCAGCCTTGGTCTTGAGCAGAAACCTCGCAGACGTCACGTACGACTCACC
CTCCTACTCCTCCTCCTCCGACGGCGGGCACGGGGCATGCGGTGGAGACT
ACAGAAGAGTTCAAGAGCAAGAGGGGGTGAGCCCGAATATATATGGATTG
TTGAGGGCAGCGACAATTGTGCGTCGAAGCAGCGACGATGACCTTTAGGC
CGCCTCCTCCTGCTGTCGCTCCTGTTGCTGCTGTCGCCGGCTACCGCTGG
AACTGCCTGTAGCGGTAGTTTGTAGTCACCCGCGCACGCAGCCAGGCGTA
CGCGGCCTTTCGAGTATGGAGCAGCAGACAGCCAGGGTCGACTCTTTAGC
TTTTCTGTGGTGGTGCAATGCGGCATCACGCCGTTTTTCTTGACTCCCTT
TGAAGAGTTTCGCTTGAGGTCGCGCCTTGCGTTTCGATGCCTCCCGTACC
CCCGCCCTGTTTTCCCATCACACGTATCCTCACCATTCATCGTCAAAACG
TGAGGAGGAGTCGAATAAGGGCATCAGTTCGTCAAAATGGAAGTTTCCAG
AGACCCCGACAGAGAAGAAATCAATGGCAGTATTCGAGGATCTGTGGGCC
AAAGGTCTGTGCGCCGTCAGCGGAAGCAACTATGGCGCGGACTACGTCGT
CTACAACGGTGAGAACTACCGCAATTGGTTGATTTTTGTAAAAAGCAATG
CGTAAAGCTACCGTGCTGCTACCGGGTACGGCGCTACTGCTCTATGCTTT
GAGCTTTGAGTGGGCGCACAAACGAACCTCGTTTCTTATGGCTTGCTTGA
CTCGCGAAAGCGCACACCTTTTGTTTTGCTCCTGCGGACCGATCACTGTA
TTGCGCTGCGCTCCTTTTGTGTGCGTTTGGCAGCTGCAGTAGATGGTCAC
TGAGTTCGGAACACCCTTATGCGTTGGCCGTCTTCGCAGGTCCTCCGACT
GAAAGGCATTCGGTCGCCGCCGTGATCGTGGGTAGAGGGTCCAACGACGA
GCTGTCTCCGGCAGAGGTATCTGGATTTGCAAGGGTGCAGCAGGCGGTAG
GGAAGCGCTCGGTTATTGCAACGCCCCCCCGTGCGACAGAGGATTCAATG
TCTACGCCGACGGGGATGGGAGAGGCGGCGGCGGTGGCATTAGCATCGCC
GCGCATCGTCGAAGCAGGGACGACCGGTGTTATCGGGCAGGCACCCTTAG
TTGCTGGACACCAGGGGGCACCAGCAACACCGGCAGCACCAACGGACGAA
GGAGTGCGTTACATCACGCTGCAGTTTCATTCCGTGAGCTACCGCGCGTG
ACGGACGCAGCATCTCTGGGACGGTGGCGTGCTATCAAGATCCTCGTCCG
TGCCGTGCCCCGAGAACCACCAACCTGCTCAAAAGGAGCGGACCGAGCAA
CAGCAGTGGCGTGCATGAAGACGCGTTGTTGGTGAAGTTGGTAGATATCA
AAGAGAGTCAACTTTCGACCACTCGAGCTTTGTGTAATGAGCGTTTCTCT
CGGGGAATGTTGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig6009:5377..7590+

>mRNA_L-elsbetiae_contig6009.14537.1 ID=mRNA_L-elsbetiae_contig6009.14537.1|Name=mRNA_L-elsbetiae_contig6009.14537.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=894bp|location=Sequence derived from alignment at L-elsbetiae_contig6009:5377..7590+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAGTATTCGAGGATCTGTGGGCCAAAGGTCTGTGCGCCGTCAGCGG
AAGCAACTATGGCGCGGACTACGTCGTCTACAACGATGGCAGTATTCGAG
GATCTGTGGGCCAAAGGTCTGTGCGCCGTCAGCGGAAGCAACTATGGCGC
GGACTACGTCGTCTACAACGGTCCTCCGACTGAAAGGCATTCGGTCGCCG
CCGTGATCGTGGGTAGAGGGTCCAACGACGAGCTGTCTCCGGCAGAGGTA
TCTGGATTTGCAAGGGTGCAGCAGGCGGTAGGGAAGCGCTCGGTTATTGC
AACGCCCCCCCGTGCGACAGAGGATTCAATGTCTACGCCGACGGGGATGG
GAGAGGCGGCGGCGGTGGCATTAGCATCGCCGCGCATCGTCGAAGCAGGG
ACGACCGGTGTTATCGGGCAGGCACCCTTAGTTGCTGGACACCAGGGGGC
ACCAGCAACACCGGCAGCACCAACGGACGAAGGAGTGCGTTACATCACGC
TGCAGTTTCATTCCGTGAGCTACCGCGCGTGAGTCCTCCGACTGAAAGGC
ATTCGGTCGCCGCCGTGATCGTGGGTAGAGGGTCCAACGACGAGCTGTCT
CCGGCAGAGGTATCTGGATTTGCAAGGGTGCAGCAGGCGGTAGGGAAGCG
CTCGGTTATTGCAACGCCCCCCCGTGCGACAGAGGATTCAATGTCTACGC
CGACGGGGATGGGAGAGGCGGCGGCGGTGGCATTAGCATCGCCGCGCATC
GTCGAAGCAGGGACGACCGGTGTTATCGGGCAGGCACCCTTAGTTGCTGG
ACACCAGGGGGCACCAGCAACACCGGCAGCACCAACGGACGAAGGAGTGC
GTTACATCACGCTGCAGTTTCATTCCGTGAGCTACCGCGCGTGA
back to top