mRNA_L-elsbetiae_contig6002.14530.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6002.14530.1
Unique NamemRNA_L-elsbetiae_contig6002.14530.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig6002.14530.1 vs. uniprot
Match: D7G857_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G857_ECTSI)

HSP 1 Score: 357 bits (915), Expect = 8.990e-120
Identity = 163/235 (69.36%), Postives = 191/235 (81.28%), Query Frame = 1 
Query:    1 SELDFVHGSFPFLVWDHSGHTSRLVGWLLRFDQNLRFKYSALPSKLVGWEVRVVESDSNWNTNLHQHSRSSERFLFDLKLLEMDYLEDPMDLHTLYYLGITTFAYLESLMGKGSHEKTPELEALVMSGMSYFGQTIDLHGDIENSELVWGSKRWLAYGYHFFIDDKEKAEGAYEACVDYDPARVDCVVFLSRLYLANGDLDAAWDKAKMALLHRPVAGSVLTYFYTFECFVSAQV 705
            SELDFVHGSFPFLVWDHSGHTSRL+GWL RFD+NLRFKY          +VRVVESDSNWN      SRS ERF FDL+ LE++Y +DP DLHTL+YLGIT FAY+ESL+GKG+HEKTPEL+A +  GMSYF Q +DLHG+I NSELVWGSKRWL+YGYH+F+ D E+AE  Y++C++YD AR+DC+VFLSRLYL N  LDAAWD AK  L+HRP AG V+TYFYTFECF+  QV
Sbjct:  185 SELDFVHGSFPFLVWDHSGHTSRLMGWLHRFDKNLRFKYR---------QVRVVESDSNWNAXXXXXSRSFERFKFDLEFLELEYEDDPTDLHTLFYLGITKFAYIESLLGKGTHEKTPELQAFITDGMSYFRQAVDLHGEIPNSELVWGSKRWLSYGYHYFVGDSEEAEKMYKSCIEYDRARIDCLVFLSRLYLDNNALDAAWDTAKEGLVHRPPAGQVMTYFYTFECFLPTQV 410
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6002.14530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G857_ECTSI8.990e-12069.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6002contigL-elsbetiae_contig6002:3..2478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score356.7
Seed ortholog evalue8.4e-96
Seed eggNOG ortholog2880.D7G857
Hectar predicted targeting categoryother localisation
EggNOG OGs2F0SW@1,2T1WJ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionNucleotide-diphospho-sugar transferases
Ec32 orthologEc-12_001410.1
Exons6
Model size708
Cds size708
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6002.14530.1prot_L-elsbetiae_contig6002.14530.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6002 3..2478 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816654.2965217-CDS-L-elsbetiae_contig6002:2..1211622816654.2965217-CDS-L-elsbetiae_contig6002:2..121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 3..121 +
1691683715.5314562-CDS-L-elsbetiae_contig6002:2..1211691683715.5314562-CDS-L-elsbetiae_contig6002:2..121Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 3..121 +
1622816654.3086338-CDS-L-elsbetiae_contig6002:575..6721622816654.3086338-CDS-L-elsbetiae_contig6002:575..672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 576..672 +
1691683715.5430725-CDS-L-elsbetiae_contig6002:575..6721691683715.5430725-CDS-L-elsbetiae_contig6002:575..672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 576..672 +
1622816654.3210514-CDS-L-elsbetiae_contig6002:1075..11541622816654.3210514-CDS-L-elsbetiae_contig6002:1075..1154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 1076..1154 +
1691683715.5543659-CDS-L-elsbetiae_contig6002:1075..11541691683715.5543659-CDS-L-elsbetiae_contig6002:1075..1154Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 1076..1154 +
1622816654.33298-CDS-L-elsbetiae_contig6002:1563..17061622816654.33298-CDS-L-elsbetiae_contig6002:1563..1706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 1564..1706 +
1691683715.5651398-CDS-L-elsbetiae_contig6002:1563..17061691683715.5651398-CDS-L-elsbetiae_contig6002:1563..1706Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 1564..1706 +
1622816654.3435113-CDS-L-elsbetiae_contig6002:1968..21191622816654.3435113-CDS-L-elsbetiae_contig6002:1968..2119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 1969..2119 +
1691683715.5755687-CDS-L-elsbetiae_contig6002:1968..21191691683715.5755687-CDS-L-elsbetiae_contig6002:1968..2119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 1969..2119 +
1622816654.3536565-CDS-L-elsbetiae_contig6002:2359..24781622816654.3536565-CDS-L-elsbetiae_contig6002:2359..2478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 2360..2478 +
1691683715.584321-CDS-L-elsbetiae_contig6002:2359..24781691683715.584321-CDS-L-elsbetiae_contig6002:2359..2478Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6002 2360..2478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6002.14530.1

>prot_L-elsbetiae_contig6002.14530.1 ID=prot_L-elsbetiae_contig6002.14530.1|Name=mRNA_L-elsbetiae_contig6002.14530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
SELDFVHGSFPFLVWDHSGHTSRLVGWLLRFDQNLRFKYSALPSKLVGWE
VRVVESDSNWNTNLHQHSRSSERFLFDLKLLEMDYLEDPMDLHTLYYLGI
TTFAYLESLMGKGSHEKTPELEALVMSGMSYFGQTIDLHGDIENSELVWG
SKRWLAYGYHFFIDDKEKAEGAYEACVDYDPARVDCVVFLSRLYLANGDL
DAAWDKAKMALLHRPVAGSVLTYFYTFECFVSAQV*
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mRNA from alignment at L-elsbetiae_contig6002:3..2478+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6002.14530.1 ID=mRNA_L-elsbetiae_contig6002.14530.1|Name=mRNA_L-elsbetiae_contig6002.14530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2476bp|location=Sequence derived from alignment at L-elsbetiae_contig6002:3..2478+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGAGCTTGACTTCGTTCATGGCTCCTTCCCGTTTCTTGTTTGGGATCA
CAGTGGGCACACCTCCCGGCTGGTGGGATGGCTTCTGCGATTCGACCAGA
ACCTGAGGTTTAAGTACAGGTATAAACGAGAGTACGGGGCACATCTTCTG
CGGAAAAGGACGGCCTCGAGTTAATCGCCTGGTTTTTGTGTTGTTGATCA
GGGTTAAATGCTGGTGTATTCACGATGAAGCCATCAACTACGTGGCACCA
CACACCAAACAGTCAGCGGTTGCTGTTGCCGCACAGATTCCACTGCTGTG
TCTCGCTATGTGCCATCCCTCCGTCGGGGGATAACAGGCAAACCGAGTGC
CTCGCACGATTTCACCGAGCCAAACAAGATCACCGCTGTCCTTGTTCAAC
TTTCGTAACCTCACTACATACGTAGGAGCACATACATATTACATTGCATA
CGATAGCATACATGATCCCCGTCACCCATCCCTCGAGCGCGACACCAAAA
ATTACACATGAATACCGCTTCAACAAACCCACAGGGTTCATGAGGTTCTG
GATACCACTACCACAGCCGCGAGCGCTTTGCCGTCGAAGCTTGTCGGGTG
GGAGGTGCGGGTGGTCGAGAGCGACTCCAACTGGAACACAAACCTCCACC
AGCACAGCCGGAGCTCCGAGGTACGGGCCGAGCCGCCGAACCGTATAGGT
GTGTTTTGTGGCCGTTCAGATACATACCGTGCAATGTTTTCGAGAAGGGT
CTTGCTCTGCCCTCTGTGTTGAAACCTCAAATTTCGGGTGTTGGTCGTCT
TTCCTTGTGACGGGGGATTACGTCTCGACCGAGCGTCTTCGCGGTACAGT
AACGAGGGACAGCTCTTTCCACACGCTCCTTGCATACAGAGAAAGAAATT
AAGGATTTAATCTTACGTTGTTGTGGTTTCTTGTTTTGCTGCTTCTCCTT
CGTTCCGCCGGATTGACAAGAAGGCACAAAACCTCTCCTTTCTTCGATGA
CGGAACAGCGTTACCCGTTGCCTCTTCCCCCATCACCCTCTGCCGTATAT
TTTTGGACATTTTGGCCGTTTAGCGCTTCCTGTTCGACCTTAAACTCCTC
GAAATGGACTACCTGGAAGACCCCATGGATCTGCACACTCTGTATTACCT
GGGTAAGAGATGTCCCGTCAGCAGCTTTGTTCGGGTCTCCGGCGGATTTG
ATTGTTCCCAGCGGTGTTGGTGCTGTTCAGTTGGCGAGCCCTACACCTGC
CAATGTTGACGGCGGCGCATTTCGTTGACGAAAAACAGATCAACACGAGA
TCGTTCGGGTATGTAACGTTTGCCGTCGATGTTTTTTCGCGCGCGTACCG
AGCGGTACCGTGGGAGTGGAGTTCGACACCACAACCCCTTGGCGTCATCA
AAGCGGTGCCAAAGCTGCACTTTTTTTGCCGTCGTAGAAACGACTTTACC
TCCATAAATAGCGAGAACACTGGCATGAGGATACGCTGCGATGCGTGCGA
TTTACGGGAGATTCGTCCTCGACAGATCATACCCCCTCCCCCGCCCTCTG
TCTGCTGCTAGGCATCACAACGTTCGCGTACTTGGAGTCGCTCATGGGAA
AGGGTAGTCACGAGAAAACCCCCGAGCTGGAGGCTCTTGTCATGAGCGGG
ATGTCCTACTTCGGCCAGACCATTGATCTTCACGGGGATATCGAAAACTC
CGAGGTGCGTTCGTTCTGCTTCGCTTTGTGGATGGAAACAAGAGAGTACA
AACGAAGAGAACCAGATTCGGATAATAAACCGTCTTGATAAAGCAAAACA
TTCTAGTTCATGCCCCCGGACAGCCCCCCAGACAAGCGTAATCGTCATGG
GCAGCAAAGTTCCGGCGTTGCGTTGCTTCAACGACTTTGCTTGAAAAAGG
GGCTATTTGCATCAACGCACATCTCGCCTTGACCGATACGGCCACTCCTG
CGTTTGGGTCATCCAGCTCGTGTGGGGATCCAAGCGCTGGCTTGCGTACG
GGTATCACTTCTTCATCGACGACAAGGAGAAGGCGGAGGGGGCGTACGAA
GCTTGCGTTGACTACGACCCTGCTCGCGTCGACTGCGTGGTCTTTCTGAG
TCGCCTGTACCTCGCAAGTGAGTGTGGCGACTGTTTCCCGCCCGTGAGTG
TGTTGTGCTGTGCTGTGCTTCCTGTGCGCTCAGCCCGCAGACGACAGCAA
GATTAGTGCCATGTAGCTGCATTGGTGGCACCCTTCAGGTACCATTCTTA
TTGGCTTCGCACAATGGCGACTTGACTGAAAATAGGTTTTGGCTGGAAGA
AAAAGAGGCCTTTCGTTGAAGCAAAATATTGTTCCTTCAACCTTTCAACC
CCGCCAGACGGCGATCTCGATGCTGCGTGGGATAAGGCGAAGATGGCGCT
TCTGCACCGCCCCGTGGCCGGCAGCGTGCTGACCTACTTCTACACCTTCG
AGTGCTTTGTCTCGGCACAGGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6002:3..2478+

>mRNA_L-elsbetiae_contig6002.14530.1 ID=mRNA_L-elsbetiae_contig6002.14530.1|Name=mRNA_L-elsbetiae_contig6002.14530.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig6002:3..2478+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGAGCTTGACTTCGTTCATGGCTCCTTCCCGTTTCTTGTTTGGGATCA
CAGTGGGCACACCTCCCGGCTGGTGGGATGGCTTCTGCGATTCGACCAGA
ACCTGAGGTTTAAGTACAGTCCGAGCTTGACTTCGTTCATGGCTCCTTCC
CGTTTCTTGTTTGGGATCACAGTGGGCACACCTCCCGGCTGGTGGGATGG
CTTCTGCGATTCGACCAGAACCTGAGGTTTAAGTACAGCGCTTTGCCGTC
GAAGCTTGTCGGGTGGGAGGTGCGGGTGGTCGAGAGCGACTCCAACTGGA
ACACAAACCTCCACCAGCACAGCCGGAGCTCCGAGCGCTTTGCCGTCGAA
GCTTGTCGGGTGGGAGGTGCGGGTGGTCGAGAGCGACTCCAACTGGAACA
CAAACCTCCACCAGCACAGCCGGAGCTCCGAGCGCTTCCTGTTCGACCTT
AAACTCCTCGAAATGGACTACCTGGAAGACCCCATGGATCTGCACACTCT
GTATTACCTGGCGCTTCCTGTTCGACCTTAAACTCCTCGAAATGGACTAC
CTGGAAGACCCCATGGATCTGCACACTCTGTATTACCTGGGCATCACAAC
GTTCGCGTACTTGGAGTCGCTCATGGGAAAGGGTAGTCACGAGAAAACCC
CCGAGCTGGAGGCTCTTGTCATGAGCGGGATGTCCTACTTCGGCCAGACC
ATTGATCTTCACGGGGATATCGAAAACTCCGAGGCATCACAACGTTCGCG
TACTTGGAGTCGCTCATGGGAAAGGGTAGTCACGAGAAAACCCCCGAGCT
GGAGGCTCTTGTCATGAGCGGGATGTCCTACTTCGGCCAGACCATTGATC
TTCACGGGGATATCGAAAACTCCGAGCTCGTGTGGGGATCCAAGCGCTGG
CTTGCGTACGGGTATCACTTCTTCATCGACGACAAGGAGAAGGCGGAGGG
GGCGTACGAAGCTTGCGTTGACTACGACCCTGCTCGCGTCGACTGCGTGG
TCTTTCTGAGTCGCCTGTACCTCGCAACTCGTGTGGGGATCCAAGCGCTG
GCTTGCGTACGGGTATCACTTCTTCATCGACGACAAGGAGAAGGCGGAGG
GGGCGTACGAAGCTTGCGTTGACTACGACCCTGCTCGCGTCGACTGCGTG
GTCTTTCTGAGTCGCCTGTACCTCGCAAACGGCGATCTCGATGCTGCGTG
GGATAAGGCGAAGATGGCGCTTCTGCACCGCCCCGTGGCCGGCAGCGTGC
TGACCTACTTCTACACCTTCGAGTGCTTTGTCTCGGCACAGGTGTGAACG
GCGATCTCGATGCTGCGTGGGATAAGGCGAAGATGGCGCTTCTGCACCGC
CCCGTGGCCGGCAGCGTGCTGACCTACTTCTACACCTTCGAGTGCTTTGT
CTCGGCACAGGTGTGA
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