mRNA_L-elsbetiae_contig600.14525.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig600.14525.1
Unique NamemRNA_L-elsbetiae_contig600.14525.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig600.14525.1 vs. uniprot
Match: D8LNA8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNA8_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 2.600e-85
Identity = 177/295 (60.00%), Postives = 200/295 (67.80%), Query Frame = 3 
Query:  279 MQSLVLMDDSYGDTGHSRPT----GPATGDRQLLPLGLVQKPSA---GGSTRNGSATGATARQQKQT--PRARPA---VDGCPSTLPPLPEGPPVMVLFPATLHLAIFLVPAPPATIVSAVMTLVAILGAWGXXXXXXVVSAAGVGSGLAAGFLVGLGVRSRPVGGWGYATLSVLGIALLGGGQPSATLGVSLALSTFWRSGWWLYLQPECVPVLSIVPGM-ADVALGFLLSSVLQIHRTPPPQQQQPQEGPQPSVLPQPETHSTAAN--RAPPLQADMWNAVTPPGLAGLRGRR 1118
            MQSLVL+DD      +SRP     GPA GDR LLPLGL+ KP A   G          A  R Q+ T  P + P     +GCPSTLPP P GPPVMVLFPATL L+IFL P PPAT+ S V+TL+AILG+WGXXXX  +VSAAGVGSGLAAG   GLGVRSRPVGGWG+  LSVLGIALLGGG+ S T G+SL LST WR GWWLY+QPEC PVL ++ G  ADVALGFLL+S+LQIHR+P                      + AA+   A   QADMWNAVTPPGLAGLRGRR
Sbjct:    1 MQSLVLVDD------YSRPAAATAGPAKGDRSLLPLGLISKPPAAEHGTGXXXXXXXXAAGRPQRPTGEPLSDPLYVRAEGCPSTLPPPPAGPPVMVLFPATLPLSIFLAPPPPATLASGVLTLLAILGSWGXXXX--LVSAAGVGSGLAAGLTAGLGVRSRPVGGWGFTGLSVLGIALLGGGKASLTFGMSLGLSTLWRHGWWLYVQPECAPVLFLLSGTTADVALGFLLTSLLQIHRSPSXXXXXXXXXXXXXXX---XVSAAAAHDHHASGSQADMWNAVTPPGLAGLRGRR 284
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BLAST of mRNA_L-elsbetiae_contig600.14525.1 vs. uniprot
Match: A0A6H5LJL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LJL3_9PHAE)

HSP 1 Score: 92.8 bits (229), Expect = 5.860e-16
Identity = 44/64 (68.75%), Postives = 52/64 (81.25%), Query Frame = 3 
Query:  759 SVLGIALLGGGQPSATLGVSLALSTFWRSGWWLYLQPECVPVLSIVPGM-ADVALGFLLSSVLQ 947
            SVLGIALLGGG+ S T G+SL L+T WR GWWLY+QPEC PV  ++ G  ADVALGFLL+S+LQ
Sbjct: 1216 SVLGIALLGGGKASLTFGMSLGLTTLWRHGWWLYVQPECAPVFFLLSGTTADVALGFLLTSLLQ 1279
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig600.14525.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LNA8_ECTSI2.600e-8560.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5LJL3_9PHAE5.860e-1668.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig600contigL-elsbetiae_contig600:16737..20021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_004540.1
Exons4
Model size1611
Cds size846
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig600.14525.1prot_L-elsbetiae_contig600.14525.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig600 17397..19534 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.6412542-UTR-L-elsbetiae_contig600:16736..169431622816653.6412542-UTR-L-elsbetiae_contig600:16736..16943Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig600 16737..16943 +
1691683715.048809-UTR-L-elsbetiae_contig600:16736..169431691683715.048809-UTR-L-elsbetiae_contig600:16736..16943Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig600 16737..16943 +
1622816653.6550333-UTR-L-elsbetiae_contig600:17325..173961622816653.6550333-UTR-L-elsbetiae_contig600:17325..17396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig600 17326..17396 +
1691683715.0645707-UTR-L-elsbetiae_contig600:17325..173961691683715.0645707-UTR-L-elsbetiae_contig600:17325..17396Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig600 17326..17396 +
1622816653.712701-UTR-L-elsbetiae_contig600:19534..200211622816653.712701-UTR-L-elsbetiae_contig600:19534..20021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig600 19535..20021 +
1691683715.113628-UTR-L-elsbetiae_contig600:19534..200211691683715.113628-UTR-L-elsbetiae_contig600:19534..20021Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig600 19535..20021 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816653.675641-CDS-L-elsbetiae_contig600:17396..178761622816653.675641-CDS-L-elsbetiae_contig600:17396..17876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig600 17397..17876 +
1691683715.08131-CDS-L-elsbetiae_contig600:17396..178761691683715.08131-CDS-L-elsbetiae_contig600:17396..17876Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig600 17397..17876 +
1622816653.6885788-CDS-L-elsbetiae_contig600:18667..188561622816653.6885788-CDS-L-elsbetiae_contig600:18667..18856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig600 18668..18856 +
1691683715.0923555-CDS-L-elsbetiae_contig600:18667..188561691683715.0923555-CDS-L-elsbetiae_contig600:18667..18856Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig600 18668..18856 +
1622816653.698884-CDS-L-elsbetiae_contig600:19357..195341622816653.698884-CDS-L-elsbetiae_contig600:19357..19534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig600 19358..19534 +
1691683715.1028984-CDS-L-elsbetiae_contig600:19357..195341691683715.1028984-CDS-L-elsbetiae_contig600:19357..19534Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig600 19358..19534 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig600.14525.1

>prot_L-elsbetiae_contig600.14525.1 ID=prot_L-elsbetiae_contig600.14525.1|Name=mRNA_L-elsbetiae_contig600.14525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=282bp
MQSLVLMDDSYGDTGHSRPTGPATGDRQLLPLGLVQKPSAGGSTRNGSAT
GATARQQKQTPRARPAVDGCPSTLPPLPEGPPVMVLFPATLHLAIFLVPA
PPATIVSAVMTLVAILGAWGWGWGWGVVSAAGVGSGLAAGFLVGLGVRSR
PVGGWGYATLSVLGIALLGGGQPSATLGVSLALSTFWRSGWWLYLQPECV
PVLSIVPGMADVALGFLLSSVLQIHRTPPPQQQQPQEGPQPSVLPQPETH
STAANRAPPLQADMWNAVTPPGLAGLRGRRL*
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mRNA from alignment at L-elsbetiae_contig600:16737..20021+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig600.14525.1 ID=mRNA_L-elsbetiae_contig600.14525.1|Name=mRNA_L-elsbetiae_contig600.14525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3285bp|location=Sequence derived from alignment at L-elsbetiae_contig600:16737..20021+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGATATGTTTCACGGAGCCCCCATGTCGCGCGTGTGGGCAGGTGGGC
AGGCTGGCTGTGGCAGGGCAGGGGACGATACTAAAAAGAGAAGGGCACAG
TTGTGTTGAACGGATATTCGCACACGAGCTCTGGCAGCGAAGAGGAACGC
GTCGCTGCTTCACAGCAAAGCCTTTGGTCCAACCTCTTTTTTGAATTCAG
TCAGTTGGTGAGTTTTGGAGTTGTATATAGTCTCTGTATCTCTCTCGCCA
TCGCCAGCCCTCCACCGCTGGTTTGTTTATTGTCAGTGTCGAGAAAGGCT
GCACTGCACGTGGCTTACGCTTCATAGTAGCCTTCTTGATCAGATGGCGT
TCGTAAGTGCCGTATCCTAGTAGTCGGCCCTCGAGACAGCAATGCGTCGA
AAACAGCGGCGAGATAGCCACGTCCAGCCTACAGCATTCAGCAGCCGGCA
TAGAGACGGGCTGTGGCCGTTGAGGTGGCTATTGCGCTACTGTGATAGTC
GCCGGTACCGCTGCAACCCTCTTGAACATTGAATGTTGTGCTGCCAAGCT
CTTCTCACAAAATATTTGTTGTTCCCCCGCCATTTCCAGGACGAAGACCG
GCGAGCCTACACAGCAGACACAGCAGTCAGCAAACTCGCACAGCGAAACC
AACAAAGGCCATGCAGTCCCTCGTGCTCATGGACGACTCCTACGGCGACA
CGGGCCATAGCAGACCAACAGGCCCGGCGACAGGCGATCGCCAGCTCCTC
CCGCTCGGTCTGGTACAGAAACCATCTGCCGGCGGTTCAACAAGGAACGG
CTCTGCTACCGGTGCTACTGCCAGACAACAAAAACAAACGCCACGAGCAC
GGCCAGCCGTCGACGGCTGCCCGTCAACGCTGCCGCCGCTGCCCGAGGGG
CCGCCGGTGATGGTGCTCTTCCCGGCCACGCTTCACCTCGCCATCTTCCT
GGTTCCTGCGCCGCCGGCGACTATCGTCTCAGCCGTCATGACCCTCGTGG
CGATCCTGGGCGCGTGGGGGTGGGGGTGGGGTTGGGGGGTGGTGTCGGCA
GCGGGAGTCGGTTCGGGGTTAGCGGCCGGGTTCTTGGTGGGGCTTGGTGT
GCGATCGAGGCCAGTCGGAGGCTGGGGTTACGCCACTCTGGTGAGTTTAG
CTCGGCTCCTATGTGATAGTCTCCCGCTTACAGATCAACCTCTCTGTGTG
TGGTGATGCTGTGACGTCGGTCGCTTTCCGTCCTTTTGGACGCCGTTTTT
TCTCGAAGAAATGTGTACATAGGAGCCCTCAGCGTTTGACCGCTCGCGCC
TTGCTCTCGCACGCCTCATTGATGCGGTCATGCCCATTTTTTTCGTGGTC
CCACCTAATATGTTAGTGGCTTCTCCTATGTATTGAGAAGAGCAGGCACC
GGGTGTTGTGCGCTGGGTTTGCTTGTTTGTCCCCTCGTCGCGTGTAAAAG
GGGTGTGGTTGTGGGGCTACATACGGGCTGATAAAAAGATGGGCGGGGGA
GTGGGGAGGAAACCTAGGATAATTCATGAAAGGGCACCCCTGCGTGTGGT
GGTTCCATCCTGCGTGAATGTTTGTAGCGCGTGGATGCGTTGTGTTTGTC
TGCCTCCCCACGACCGCCCACGTGCGCCTGACCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCACCCTCCCC
CCCCCAACACACCCCCCCCACCCCGCCCGATGNNNNNNNNNNCCCCTTGT
GTTGTTTTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCTCACCACCACCAATGTACCTTTTAAACGAATGTGGTAACTCATC
GTGTCTGAATGGCGGCAAAACGCGCCCACAGTCAGTGTTAGGCATCGCGC
TGCTAGGAGGGGGGCAGCCCAGCGCAACTCTTGGGGTGTCTCTGGCTCTG
TCTACGTTTTGGAGGAGCGGGTGGTGGCTGTACCTGCAGCCGGAGTGCGT
GCCCGTGTTGTCCATTGTGCCGGGGATGGCGGATGTTGCCCTTGGGTTCC
TGCTGTCTTCTGTGCTTCAGGTAAGAGGGGCTATTTTTGAGCATGGGAGC
CATCGAGACCGGTGTCACCAAGTAAGTGGTGATCCTTTCTGGCTCGCCAT
GTGTACTCTGCACGTCACGTACTGGTATTGCAGCCCGGGTCTGTTTGTTG
TGGTTGTTCAGGTGCCTTCGAAGGCCACCATTCCCTACCCATTTCCACGG
TAGCAACTCCATTTTTGAGCTCGCAGCCGAACCATCTGTAGCGAAGAGCT
CAAGGACGCGTGTGGACTTGATGCAGCCATCCCAGTGCACGCCTCCTCAA
CGGGCGTGGATGGTCGATATGTATCGAGGCATCGTTATTCACGTGCCTTC
GTCCTCGTTGCTCCACTCAACCTCGCGACTCTAAAGGTTTGTTGCTTGTC
ATCGCGAATACTACTCGCATGGAGAGGCGCGCCCATCCTTGGGTGGCCTC
TGTGCAGGCACATATGTATAAAGTCATACCCACCCCAACACCCCCGCCCT
CGTATGCTCGTATTCCAACAGATTCATCGTACACCTCCGCCGCAGCAGCA
GCAGCCCCAAGAGGGGCCGCAGCCGTCGGTGCTTCCTCAGCCCGAGACTC
ACAGCACCGCCGCGAATCGAGCCCCGCCGTTGCAAGCGGATATGTGGAAC
GCCGTGACCCCACCCGGTCTTGCCGGCCTGCGCGGCCGTAGGTTGTAGAT
GAACTTCATCACATTTTACCCCGCGGGTGCACGTGGACGGTTGATTTCGC
AGTCTTCCAGCGGGGACGGGGCTCGGGGCGGGGCGGCGCAGCTTATAGAG
AACGAGCACCAGTCGATTCGCAAGAGGGCCTGCTGCGTGTGCTTTCGGAT
GTGCGGCTTTGGTGTAGGTGAGGGTTGGAAGGGAGCAGCGAGCAAAGACG
GGGTTTTCCGTCCTGCGTTTAGAGGTCGGGCGTGAGAATAATGGTGTTGG
CGCCTCAAGGAATCTTGCTTTCGGCTGGGGGGCTCCCCGAGCCATCTTAG
GGACGGGGTCCACGATAGTTCTGCCTTTGTGGTAGAGGGCTGTGTGAGTG
TGTGGGTCGTCGGGCATACTGCTGCGGCGTAGGTTAAGTTTTTGGGTCGC
AACGCGGTGCCGGTGTGTGTGTGTGTGTTGCGTACCCGCCGCGCCTTTTG
TTGTACAAGTAGCCGAAAACACTTTCCTCGCCTCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig600:16737..20021+

>mRNA_L-elsbetiae_contig600.14525.1 ID=mRNA_L-elsbetiae_contig600.14525.1|Name=mRNA_L-elsbetiae_contig600.14525.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1692bp|location=Sequence derived from alignment at L-elsbetiae_contig600:16737..20021+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGTCCCTCGTGCTCATGGACGACTCCTACGGCGACACGGGCCATAG
CAGACCAACAGGCCCGGCGACAGGCGATCGCCAGCTCCTCCCGCTCGGTC
TGGTACAGAAACCATCTGCCGGCGGTTCAACAAGGAACGGCTCTGCTACC
GGTGCTACTGCCAGACAACAAAAACAAACGCCACGAGCACGGCCAGCCGT
CGACGGCTGCCCGTCAACGCTGCCGCCGCTGCCCGAGGGGCCGCCGGTGA
TGGTGCTCTTCCCGGCCACGCTTCACCTCGCCATCTTCCTGGTTCCTGCG
CCGCCGGCGACTATCGTCTCAGCCGTCATGACCCTCGTGGCGATCCTGGG
CGCGTGGGGGTGGGGGTGGGGTTGGGGGGTGGTGTCGGCAGCGGGAGTCG
GTTCGGGGTTAGCGGCCGGGTTCTTGGTGGGGCTTGGTGTGCGATCGAGG
CCAGTCGGAGGCTGGGGTTACGCCACTCTGATGCAGTCCCTCGTGCTCAT
GGACGACTCCTACGGCGACACGGGCCATAGCAGACCAACAGGCCCGGCGA
CAGGCGATCGCCAGCTCCTCCCGCTCGGTCTGGTACAGAAACCATCTGCC
GGCGGTTCAACAAGGAACGGCTCTGCTACCGGTGCTACTGCCAGACAACA
AAAACAAACGCCACGAGCACGGCCAGCCGTCGACGGCTGCCCGTCAACGC
TGCCGCCGCTGCCCGAGGGGCCGCCGGTGATGGTGCTCTTCCCGGCCACG
CTTCACCTCGCCATCTTCCTGGTTCCTGCGCCGCCGGCGACTATCGTCTC
AGCCGTCATGACCCTCGTGGCGATCCTGGGCGCGTGGGGGTGGGGGTGGG
GTTGGGGGGTGGTGTCGGCAGCGGGAGTCGGTTCGGGGTTAGCGGCCGGG
TTCTTGGTGGGGCTTGGTGTGCGATCGAGGCCAGTCGGAGGCTGGGGTTA
CGCCACTCTGTCAGTGTTAGGCATCGCGCTGCTAGGAGGGGGGCAGCCCA
GCGCAACTCTTGGGGTGTCTCTGGCTCTGTCTACGTTTTGGAGGAGCGGG
TGGTGGCTGTACCTGCAGCCGGAGTGCGTGCCCGTGTTGTCCATTGTGCC
GGGGATGGCGGATGTTGCCCTTGGGTTCCTGCTGTCTTCTGTGCTTCAGT
CAGTGTTAGGCATCGCGCTGCTAGGAGGGGGGCAGCCCAGCGCAACTCTT
GGGGTGTCTCTGGCTCTGTCTACGTTTTGGAGGAGCGGGTGGTGGCTGTA
CCTGCAGCCGGAGTGCGTGCCCGTGTTGTCCATTGTGCCGGGGATGGCGG
ATGTTGCCCTTGGGTTCCTGCTGTCTTCTGTGCTTCAGATTCATCGTACA
CCTCCGCCGCAGCAGCAGCAGCCCCAAGAGGGGCCGCAGCCGTCGGTGCT
TCCTCAGCCCGAGACTCACAGCACCGCCGCGAATCGAGCCCCGCCGTTGC
AAGCGGATATGTGGAACGCCGTGACCCCACCCGGTCTTGCCGGCCTGCGC
GGCCGTAGGTTGTAGATTCATCGTACACCTCCGCCGCAGCAGCAGCAGCC
CCAAGAGGGGCCGCAGCCGTCGGTGCTTCCTCAGCCCGAGACTCACAGCA
CCGCCGCGAATCGAGCCCCGCCGTTGCAAGCGGATATGTGGAACGCCGTG
ACCCCACCCGGTCTTGCCGGCCTGCGCGGCCGTAGGTTGTAG
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