mRNA_L-elsbetiae_contig6.14513.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig6.14513.1
Unique NamemRNA_L-elsbetiae_contig6.14513.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig6.14513.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig6contigL-elsbetiae_contig6:81894..82605 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size267
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig6.14513.1prot_L-elsbetiae_contig6.14513.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig6 81894..82603 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.8648427-CDS-L-elsbetiae_contig6:81893..819751622816650.8648427-CDS-L-elsbetiae_contig6:81893..81975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 81894..81975 +
1691683712.713939-CDS-L-elsbetiae_contig6:81893..819751691683712.713939-CDS-L-elsbetiae_contig6:81893..81975Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 81894..81975 +
1622816650.875228-CDS-L-elsbetiae_contig6:82291..823701622816650.875228-CDS-L-elsbetiae_contig6:82291..82370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 82292..82370 +
1691683712.7263908-CDS-L-elsbetiae_contig6:82291..823701691683712.7263908-CDS-L-elsbetiae_contig6:82291..82370Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 82292..82370 +
1622816650.8876917-CDS-L-elsbetiae_contig6:82500..826031622816650.8876917-CDS-L-elsbetiae_contig6:82500..82603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 82501..82603 +
1691683712.7367911-CDS-L-elsbetiae_contig6:82500..826031691683712.7367911-CDS-L-elsbetiae_contig6:82500..82603Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig6 82501..82603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig6.14513.1

>prot_L-elsbetiae_contig6.14513.1 ID=prot_L-elsbetiae_contig6.14513.1|Name=mRNA_L-elsbetiae_contig6.14513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
SSADALAPSEVLYSAWRPSLQDTVSSRGRRAAGGSGRAGNANPPDPGSRV
RLPRRGGDMHSRALSSREGRRVLRHPGVRGVTGSVLSR
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mRNA from alignment at L-elsbetiae_contig6:81894..82605+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig6.14513.1 ID=mRNA_L-elsbetiae_contig6.14513.1|Name=mRNA_L-elsbetiae_contig6.14513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=712bp|location=Sequence derived from alignment at L-elsbetiae_contig6:81894..82605+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTCTGCCGATGCTCTGGCCCCCTCCGAAGTCTTGTACAGTGCTTGGCG
ACCAAGTCTGCAGGATACCGTCTCAAGTCGTGGTGAGGAAGCGTTGTCTG
ACCGCGTAAACGACTTGATTTGGTTGGTGGCAAATTGTTGTCACCTCTCG
CCACGGTATATACGTGCCAATAGTTCTGAGCTGCCGCGACGTCTGCCACC
CTCGTTGCTTCTGTAGTAATTCGACCCTAAGGCCAACCCTTTGGTCTTAG
ACGCCCTTGGCGTTTCTGCCCCCCACCTCCCTCCCCGCCGTACAAGAAGG
CCTCATGCCCCAATTATCATGTTGCAGCCTCGATGCCCTCAATCCACCCT
AAGGTTCGTCCCCCCTTTCCCCCTATTATTTCCCTCGGCTACGTTAAGGT
CGTCGTGCCGCCGGGGGGAGTGGCCGGGCCGGGAACGCTAATCCTCCGGA
CCCTGGAAGCCGCGTTCGCCTCCCACGGTGTGTACGATGTTTCGATTATT
TAGTCTCGCTTGGTTGGTCTGTTTTCTTGTTTGGCACGCGAGTGTGTACA
CCTTAACCGTTTGCTCCGCCTTTGGTGGATCGTTTTGGTTATCTCGTCAC
TTGACAGGCGTGGCGGCGACATGCACTCGCGGGCGTTGTCCTCCCGGGAG
GGGCGGCGAGTTCTTCGTCACCCTGGCGTGCGGGGGGTTACAGGGAGCGT
GCTCAGCAGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig6:81894..82605+

>mRNA_L-elsbetiae_contig6.14513.1 ID=mRNA_L-elsbetiae_contig6.14513.1|Name=mRNA_L-elsbetiae_contig6.14513.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig6:81894..82605+ (Laminarionema elsbetiae ELsaHSoW15)
AGCTCTGCCGATGCTCTGGCCCCCTCCGAAGTCTTGTACAGTGCTTGGCG
ACCAAGTCTGCAGGATACCGTCTCAAGTCGTGAGCTCTGCCGATGCTCTG
GCCCCCTCCGAAGTCTTGTACAGTGCTTGGCGACCAAGTCTGCAGGATAC
CGTCTCAAGTCGTGGTCGTCGTGCCGCCGGGGGGAGTGGCCGGGCCGGGA
ACGCTAATCCTCCGGACCCTGGAAGCCGCGTTCGCCTCCCACGGTCGTCG
TGCCGCCGGGGGGAGTGGCCGGGCCGGGAACGCTAATCCTCCGGACCCTG
GAAGCCGCGTTCGCCTCCCACGGCGTGGCGGCGACATGCACTCGCGGGCG
TTGTCCTCCCGGGAGGGGCGGCGAGTTCTTCGTCACCCTGGCGTGCGGGG
GGTTACAGGGAGCGTGCTCAGCAGGGCGTGGCGGCGACATGCACTCGCGG
GCGTTGTCCTCCCGGGAGGGGCGGCGAGTTCTTCGTCACCCTGGCGTGCG
GGGGGTTACAGGGAGCGTGCTCAGCAGG
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