mRNA_L-elsbetiae_contig5991.14501.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5991.14501.1
Unique NamemRNA_L-elsbetiae_contig5991.14501.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: D7G0Q0_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0Q0_ECTSI)

HSP 1 Score: 111 bits (277), Expect = 2.100e-27
Identity = 55/55 (100.00%), Postives = 55/55 (100.00%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI
Sbjct:  329 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 383          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A7S2UT53_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UT53_9STRA)

HSP 1 Score: 93.2 bits (230), Expect = 3.850e-22
Identity = 46/55 (83.64%), Postives = 50/55 (90.91%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            +R L+NNRELSDVTFIVDGFPVYASR HLA+RSEHFRAMLYGGMRES+   EIEI
Sbjct:   57 LRSLINNRELSDVTFIVDGFPVYASRAHLAVRSEHFRAMLYGGMRESQS-EEIEI 110          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A835YYB0_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYB0_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.910e-20
Identity = 42/55 (76.36%), Postives = 49/55 (89.09%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            +R +VN RELSDVTF+VDGFPV+ASR HLA RSEHFRAMLYGG+RES+ G EIE+
Sbjct:  344 LRGMVNCRELSDVTFLVDGFPVFASRAHLAARSEHFRAMLYGGLRESQAGCEIEV 398          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A7S2WPN5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WPN5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 4.070e-18
Identity = 43/55 (78.18%), Postives = 48/55 (87.27%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            MR LVNNRELSDVTF+V+G  VYASR+HLA RSEHFRAML+GGMRES  G EIE+
Sbjct:  360 MRTLVNNRELSDVTFLVEGQAVYASRIHLAARSEHFRAMLFGGMRESSSG-EIEL 413          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A7S1U372_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U372_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.540e-15
Identity = 38/55 (69.09%), Postives = 45/55 (81.82%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            +R L+NN++ SDVTFIV G PVYA+R HLA RSEHFRAMLYGGMRE+    EI+I
Sbjct:  343 LRSLINNKDFSDVTFIVGGEPVYATRAHLAARSEHFRAMLYGGMREAN-AEEIQI 396          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A7R9UG27_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UG27_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 3.360e-15
Identity = 35/47 (74.47%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRES 141
            MR LVNN+  SDVTFIVDG P+YA+R HLA R EHFRAMLYG MRE+
Sbjct:   70 MRSLVNNQMFSDVTFIVDGIPIYATRAHLAARCEHFRAMLYGEMREA 116          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A812JLS0_9DINO (ARIA protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A812JLS0_9DINO)

HSP 1 Score: 70.1 bits (170), Expect = 9.290e-14
Identity = 32/52 (61.54%), Postives = 39/52 (75.00%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAE 156
            +RKL+NN   +DVTF+V+   VYA+R HLA RSEHFRA+ YGGMRES    E
Sbjct:   47 LRKLINNPAFADVTFVVENQSVYATRAHLAARSEHFRALFYGGMRESSDAEE 98          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A7S1A9A8_NOCSC (Hypothetical protein n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1A9A8_NOCSC)

HSP 1 Score: 72.8 bits (177), Expect = 1.230e-13
Identity = 35/55 (63.64%), Postives = 43/55 (78.18%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            +RKL+NN   +DVTF+V+  PVYA+R HLA RSEHFRA+ YGGMRES  G E +I
Sbjct:  345 LRKLINNPAFADVTFLVESQPVYATRAHLAARSEHFRALFYGGMRESS-GTEEQI 398          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A8J1ZUD2_9DINO (Hypothetical protein n=1 Tax=Amoebophrya sp. A25 TaxID=1410381 RepID=A0A8J1ZUD2_9DINO)

HSP 1 Score: 70.9 bits (172), Expect = 5.870e-13
Identity = 36/56 (64.29%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAE-IEI 165
            +R +VNN  L DVTF V+G PVYA+R HLA RS+HFRA+ YGGMRE+ K  E IEI
Sbjct:  382 LRSIVNNPILGDVTFKVEGMPVYATRSHLAARSDHFRALFYGGMRETMKPEEAIEI 437          
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Match: A0A7S2PNL5_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2PNL5_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.770e-13
Identity = 34/55 (61.82%), Postives = 40/55 (72.73%), Query Frame = 1
Query:    1 MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKGAEIEI 165
            M+++VN+ E SDVTFIV+G P+YA R  LA R EHF AM   GMRESE G EI I
Sbjct:   33 MKEMVNDEEYSDVTFIVEGQPIYALRAVLAKRCEHFAAMFRSGMRESEAGVEIPI 87          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5991.14501.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Q0_ECTSI2.100e-27100.00BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2UT53_9STRA3.850e-2283.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A835YYB0_9STRA4.910e-2076.36BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2WPN5_9STRA4.070e-1878.18Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1U372_9STRA1.540e-1569.09Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9UG27_9STRA3.360e-1574.47Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A812JLS0_9DINO9.290e-1461.54ARIA protein n=1 Tax=Symbiodinium necroappetens Ta... [more]
A0A7S1A9A8_NOCSC1.230e-1363.64Hypothetical protein n=1 Tax=Noctiluca scintillans... [more]
A0A8J1ZUD2_9DINO5.870e-1364.29Hypothetical protein n=1 Tax=Amoebophrya sp. A25 T... [more]
A0A7S2PNL5_9STRA7.770e-1361.82Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5991contigL-elsbetiae_contig5991:10695..10859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue2.4e-09
Seed eggNOG ortholog159749.K0RUP0
KEGG koko:K10480,ko:K11494,ko:K12035
KEGG Pathwayko05206,map05206
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Regulator of chromosome condensation (RCC1) repeat
EggNOG OGs2XB8G@2836,COG5184@1,KOG1426@2759,KOG4350@1,KOG4350@2759
Ec32 ortholog descriptionKelch-type beta propeller
Ec32 orthologEc-09_001240.1
EC2.3.2.27
COG Functional cat.DZ
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03036,ko04121
Exons1
Model size165
Cds size165
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816650.3321216-CDS-L-elsbetiae_contig5991:10694..108591622816650.3321216-CDS-L-elsbetiae_contig5991:10694..10859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5991 10695..10859 +
1691683712.3561811-CDS-L-elsbetiae_contig5991:10694..108591691683712.3561811-CDS-L-elsbetiae_contig5991:10694..10859Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5991 10695..10859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5991.14501.1prot_L-elsbetiae_contig5991.14501.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5991 10695..10859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5991.14501.1

>prot_L-elsbetiae_contig5991.14501.1 ID=prot_L-elsbetiae_contig5991.14501.1|Name=mRNA_L-elsbetiae_contig5991.14501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
MRKLVNNRELSDVTFIVDGFPVYASRVHLALRSEHFRAMLYGGMRESEKG
AEIEI
back to top

mRNA from alignment at L-elsbetiae_contig5991:10695..10859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5991.14501.1 ID=mRNA_L-elsbetiae_contig5991.14501.1|Name=mRNA_L-elsbetiae_contig5991.14501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=165bp|location=Sequence derived from alignment at L-elsbetiae_contig5991:10695..10859+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAGCTGGTGAACAACCGGGAGCTGAGTGACGTAACCTTCATCGT GGACGGCTTCCCGGTGTACGCGAGCCGGGTGCACCTGGCCCTCCGATCCG AGCACTTCAGGGCAATGCTCTACGGGGGGATGCGCGAAAGCGAAAAGGGC GCAGAGATAGAGATC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig5991:10695..10859+

>mRNA_L-elsbetiae_contig5991.14501.1 ID=mRNA_L-elsbetiae_contig5991.14501.1|Name=mRNA_L-elsbetiae_contig5991.14501.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig5991:10695..10859+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGAAGCTGGTGAACAACCGGGAGCTGAGTGACGTAACCTTCATCGT
GGACGGCTTCCCGGTGTACGCGAGCCGGGTGCACCTGGCCCTCCGATCCG
AGCACTTCAGGGCAATGCTCTACGGGGGGATGCGCGAAAGCGAAAAGGGC
GCAGAGATAGAGATCATGCGGAAGCTGGTGAACAACCGGGAGCTGAGTGA
CGTAACCTTCATCGTGGACGGCTTCCCGGTGTACGCGAGCCGGGTGCACC
TGGCCCTCCGATCCGAGCACTTCAGGGCAATGCTCTACGGGGGGATGCGC
GAAAGCGAAAAGGGCGCAGAGATAGAGATC
back to top