mRNA_L-elsbetiae_contig5989.14496.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5989.14496.1
Unique NamemRNA_L-elsbetiae_contig5989.14496.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5989.14496.1 vs. uniprot
Match: D7FNN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNN0_ECTSI)

HSP 1 Score: 61.2 bits (147), Expect = 8.140e-10
Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1 
Query:    7 MNITRENFEEMFETICEAIRSSHFIALDAEFTG 105
            MNIT+ENFE+ F+ ICEAIRSSHFIALD EFTG
Sbjct:    1 MNITKENFEQSFDVICEAIRSSHFIALDTEFTG 33
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5989.14496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FNN0_ECTSI8.140e-1081.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5989contigL-elsbetiae_contig5989:11045..11170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.8
Seed ortholog evalue1.6e-07
Seed eggNOG ortholog2880.D7FNN0
KEGG koko:K01148,ko:K13202
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.poly(A)-specific ribonuclease activity
EggNOG OGsKOG1990@1,KOG1990@2759
EC3.1.13.4
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Exons1
Model size126
Cds size120
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.7469182-UTR-L-elsbetiae_contig5989:11044..110501622816649.7469182-UTR-L-elsbetiae_contig5989:11044..11050Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5989 11045..11050 +
1691683711.8982542-UTR-L-elsbetiae_contig5989:11044..110501691683711.8982542-UTR-L-elsbetiae_contig5989:11044..11050Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig5989 11045..11050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.7594259-CDS-L-elsbetiae_contig5989:11050..111701622816649.7594259-CDS-L-elsbetiae_contig5989:11050..11170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 11051..11170 +
1691683711.9099796-CDS-L-elsbetiae_contig5989:11050..111701691683711.9099796-CDS-L-elsbetiae_contig5989:11050..11170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5989 11051..11170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5989.14496.1prot_L-elsbetiae_contig5989.14496.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5989 11051..11170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5989.14496.1

>prot_L-elsbetiae_contig5989.14496.1 ID=prot_L-elsbetiae_contig5989.14496.1|Name=mRNA_L-elsbetiae_contig5989.14496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=40bp
MNITRENFEEMFETICEAIRSSHFIALDAEFTGENRGKL*
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mRNA from alignment at L-elsbetiae_contig5989:11045..11170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5989.14496.1 ID=mRNA_L-elsbetiae_contig5989.14496.1|Name=mRNA_L-elsbetiae_contig5989.14496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=126bp|location=Sequence derived from alignment at L-elsbetiae_contig5989:11045..11170+ (Laminarionema elsbetiae ELsaHSoW15)
TCCGCTATGAACATCACCAGGGAAAACTTCGAGGAGATGTTCGAGACAAT
ATGCGAAGCTATTAGGAGCTCCCATTTCATCGCCCTGGACGCTGAATTCA
CAGGTGAAAACCGCGGAAAACTATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5989:11045..11170+

>mRNA_L-elsbetiae_contig5989.14496.1 ID=mRNA_L-elsbetiae_contig5989.14496.1|Name=mRNA_L-elsbetiae_contig5989.14496.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=240bp|location=Sequence derived from alignment at L-elsbetiae_contig5989:11045..11170+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACATCACCAGGGAAAACTTCGAGGAGATGTTCGAGACAATATGCGA
AGCTATTAGGAGCTCCCATTTCATCGCCCTGGACGCTGAATTCACAGGTG
AAAACCGCGGAAAACTATGAATGAACATCACCAGGGAAAACTTCGAGGAG
ATGTTCGAGACAATATGCGAAGCTATTAGGAGCTCCCATTTCATCGCCCT
GGACGCTGAATTCACAGGTGAAAACCGCGGAAAACTATGA
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