mRNA_L-elsbetiae_contig5987.14493.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig5987.14493.1
Unique NamemRNA_L-elsbetiae_contig5987.14493.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig5987.14493.1 vs. uniprot
Match: A0A6H5K2Y9_9PHAE (HECT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2Y9_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.160e-20
Identity = 46/57 (80.70%), Postives = 50/57 (87.72%), Query Frame = -2 
Query:   51 GVAPPAFLAARAACGQSHTVLVSTAGEVWSAGRNRSGQLGVDPEEIAETSSPVTVPL 221
            G  PPAFLAARAACGQSHTVLVSTAGE W+ GRNRSGQLGVDP+ + ETS+PV VPL
Sbjct:  640 GATPPAFLAARAACGQSHTVLVSTAGEAWACGRNRSGQLGVDPDIVGETSTPVRVPL 696
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BLAST of mRNA_L-elsbetiae_contig5987.14493.1 vs. uniprot
Match: D7FWC7_ECTSI (HECT domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC7_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.940e-19
Identity = 45/57 (78.95%), Postives = 49/57 (85.96%), Query Frame = -2 
Query:   51 GVAPPAFLAARAACGQSHTVLVSTAGEVWSAGRNRSGQLGVDPEEIAETSSPVTVPL 221
            G  PPAFLAARAACGQSHTVLVSTAG+ W+ GRNRSGQLGVDP  + ETS+PV VPL
Sbjct:  218 GATPPAFLAARAACGQSHTVLVSTAGDAWACGRNRSGQLGVDPNIVGETSTPVRVPL 274
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig5987.14493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K2Y9_9PHAE4.160e-2080.70HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FWC7_ECTSI1.940e-1978.95HECT domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig5987contigL-elsbetiae_contig5987:6616..6945 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622816649.4888675-CDS-L-elsbetiae_contig5987:6615..69451622816649.4888675-CDS-L-elsbetiae_contig5987:6615..6945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5987 6616..6945 +
1691683711.734771-CDS-L-elsbetiae_contig5987:6615..69451691683711.734771-CDS-L-elsbetiae_contig5987:6615..6945Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig5987 6616..6945 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig5987.14493.1prot_L-elsbetiae_contig5987.14493.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig5987 6616..6945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig5987.14493.1

>prot_L-elsbetiae_contig5987.14493.1 ID=prot_L-elsbetiae_contig5987.14493.1|Name=mRNA_L-elsbetiae_contig5987.14493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
PPPTSPLAEGRLSSGKRSGTVTGDDVSAISSGSTPSWPDRLRPADQTSPA
VDTSTVWLCPQAALAARNAGGATPPTRPAPAAVPAAVAASDGADFGAGGE
RPAAAVLASA
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mRNA from alignment at L-elsbetiae_contig5987:6616..6945+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig5987.14493.1 ID=mRNA_L-elsbetiae_contig5987.14493.1|Name=mRNA_L-elsbetiae_contig5987.14493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig5987:6616..6945+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCCCTACTTCTCCTCTTGCAGAGGGGCGGCTATCGTCTGGCAAGAG
AAGCGGGACCGTCACCGGCGACGACGTCTCGGCGATCTCCTCGGGGTCGA
CCCCGAGCTGGCCGGACCGGTTGCGGCCGGCCGACCAGACCTCCCCCGCG
GTCGACACCAGCACGGTGTGGCTCTGCCCGCAGGCCGCCCTGGCAGCCAG
GAATGCGGGCGGGGCCACTCCGCCGACGCGGCCGGCGCCGGCCGCGGTGC
CCGCGGCCGTGGCGGCATCGGACGGTGCTGACTTCGGCGCCGGTGGAGAA
CGACCGGCGGCAGCGGTGCTAGCGTCGGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig5987:6616..6945+

>mRNA_L-elsbetiae_contig5987.14493.1 ID=mRNA_L-elsbetiae_contig5987.14493.1|Name=mRNA_L-elsbetiae_contig5987.14493.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig5987:6616..6945+ (Laminarionema elsbetiae ELsaHSoW15)
CCTCCCCCTACTTCTCCTCTTGCAGAGGGGCGGCTATCGTCTGGCAAGAG
AAGCGGGACCGTCACCGGCGACGACGTCTCGGCGATCTCCTCGGGGTCGA
CCCCGAGCTGGCCGGACCGGTTGCGGCCGGCCGACCAGACCTCCCCCGCG
GTCGACACCAGCACGGTGTGGCTCTGCCCGCAGGCCGCCCTGGCAGCCAG
GAATGCGGGCGGGGCCACTCCGCCGACGCGGCCGGCGCCGGCCGCGGTGC
CCGCGGCCGTGGCGGCATCGGACGGTGCTGACTTCGGCGCCGGTGGAGAA
CGACCGGCGGCAGCGGTGCTAGCGTCGGCACCTCCCCCTACTTCTCCTCT
TGCAGAGGGGCGGCTATCGTCTGGCAAGAGAAGCGGGACCGTCACCGGCG
ACGACGTCTCGGCGATCTCCTCGGGGTCGACCCCGAGCTGGCCGGACCGG
TTGCGGCCGGCCGACCAGACCTCCCCCGCGGTCGACACCAGCACGGTGTG
GCTCTGCCCGCAGGCCGCCCTGGCAGCCAGGAATGCGGGCGGGGCCACTC
CGCCGACGCGGCCGGCGCCGGCCGCGGTGCCCGCGGCCGTGGCGGCATCG
GACGGTGCTGACTTCGGCGCCGGTGGAGAACGACCGGCGGCAGCGGTGCT
AGCGTCGGCA
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